Wall clock time and date at job start Tue Mar 31 2020 10:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47054 * 2 1 4 4 N 1.46504 * 109.47225 * 119.99951 * 2 1 3 5 5 C 1.35314 * 125.86662 * 275.29716 * 4 2 1 6 6 C 1.35348 * 106.17513 * 180.18042 * 5 4 2 7 7 C 1.50696 * 126.75678 * 179.84985 * 6 5 4 8 8 N 1.46896 * 109.47057 * 94.71429 * 7 6 5 9 9 C 1.46897 * 111.00136 * 71.89633 * 8 7 6 10 10 C 1.50698 * 109.46853 * 61.25477 * 9 8 7 11 11 H 1.08005 * 120.00600 * 355.23471 * 10 9 8 12 12 C 1.37876 * 120.00208 * 175.23468 * 10 9 8 13 13 N 1.31515 * 120.00057 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00494 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46983 * 89.99567 * 14 12 10 16 16 H 1.48495 * 109.47278 * 210.00212 * 14 12 10 17 17 H 1.48499 * 109.46784 * 330.00061 * 14 12 10 18 18 C 1.46910 * 111.00215 * 195.85169 * 8 7 6 19 19 C 1.50694 * 109.46993 * 169.99713 * 18 8 7 20 20 C 1.38231 * 119.61665 * 94.98187 * 19 18 8 21 21 C 1.38628 * 119.16520 * 179.78628 * 20 19 18 22 22 C 1.38677 * 118.41555 * 0.47114 * 21 20 19 23 23 C 1.38183 * 119.16409 * 359.50917 * 22 21 20 24 24 N 1.31852 * 119.62206 * 274.99904 * 19 18 8 25 25 N 1.33778 * 106.49364 * 359.59422 * 6 5 4 26 26 N 1.28628 * 108.88709 * 0.25755 * 25 6 5 27 27 H 1.08999 * 109.47485 * 300.00462 * 1 2 3 28 28 H 1.09003 * 109.47096 * 60.00131 * 1 2 3 29 29 H 1.08995 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47406 * 240.00045 * 2 1 3 31 31 H 1.09007 * 109.46980 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47466 * 299.99848 * 3 2 1 33 33 H 1.09000 * 109.47167 * 60.00217 * 3 2 1 34 34 H 1.08007 * 126.91499 * 0.04022 * 5 4 2 35 35 H 1.09003 * 109.47005 * 334.71811 * 7 6 5 36 36 H 1.09002 * 109.47587 * 214.72009 * 7 6 5 37 37 H 1.08999 * 109.47050 * 181.25003 * 9 8 7 38 38 H 1.08994 * 109.47177 * 301.25848 * 9 8 7 39 39 H 0.97003 * 120.00745 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.46415 * 50.00155 * 18 8 7 41 41 H 1.08995 * 109.46849 * 290.00630 * 18 8 7 42 42 H 1.07998 * 120.41817 * 359.97438 * 20 19 18 43 43 H 1.07995 * 120.79334 * 180.23450 * 21 20 19 44 44 H 1.07996 * 120.41559 * 179.77571 * 22 21 20 45 45 H 1.07996 * 119.61478 * 180.24892 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1356 2.4187 6 6 2.6555 -1.1216 3.2190 7 6 3.0062 -1.0070 4.6801 8 7 1.8553 -1.4206 5.4937 9 6 1.6553 -2.8742 5.4223 10 6 2.8743 -3.5761 5.9631 11 1 3.7434 -3.0037 6.2520 12 6 2.8801 -4.9490 6.0891 13 7 1.8221 -5.6462 5.7369 14 14 4.3914 -5.8192 6.7587 15 1 4.2836 -5.9326 8.2354 16 1 4.4856 -7.1764 6.1635 17 1 5.6065 -5.0402 6.4095 18 6 2.0086 -0.9781 6.8862 19 6 0.7160 -1.1990 7.6287 20 6 0.5382 -2.3581 8.3607 21 6 -0.6528 -2.5497 9.0438 22 6 -1.6287 -1.5684 8.9566 23 6 -1.3794 -0.4355 8.2056 24 7 -0.2324 -0.2848 7.5724 25 7 2.7405 -2.2193 2.4591 26 7 2.3558 -1.9308 1.2661 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.9902 0.8887 2.6989 35 1 3.2625 0.0267 4.9122 36 1 3.8576 -1.6507 4.9010 37 1 0.7838 -3.1506 6.0158 38 1 1.4968 -3.1686 4.3850 39 1 1.8260 -6.6122 5.8258 40 1 2.2616 0.0820 6.9046 41 1 2.8043 -1.5499 7.3635 42 1 1.3185 -3.1036 8.4024 43 1 -0.8181 -3.4436 9.6267 44 1 -2.5700 -1.6860 9.4728 45 1 -2.1328 0.3351 8.1360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289286463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:20 Heat of formation + Delta-G solvation = 118.862745 kcal Electronic energy + Delta-G solvation = -26417.039308 eV Core-core repulsion = 22857.170844 eV Total energy + Delta-G solvation = -3559.868464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.08488 -41.01412 -38.49840 -37.21799 -34.55801 -33.50096 -33.09822 -32.10782 -31.75593 -29.14919 -28.34793 -27.78428 -26.03386 -24.74177 -24.26743 -23.77150 -22.24621 -21.53289 -21.20850 -18.69711 -17.86685 -17.46850 -17.31427 -17.12311 -16.64129 -16.27541 -16.19470 -15.78229 -15.56785 -15.24424 -14.94392 -14.41532 -14.18404 -14.03296 -14.01168 -13.75843 -13.41946 -13.21652 -13.13215 -12.90712 -12.79511 -12.67212 -12.45911 -12.35702 -12.32943 -12.14928 -12.06737 -11.90185 -11.63146 -11.43411 -10.84662 -10.66347 -10.48708 -10.24221 -10.04576 -9.75066 -8.94903 -8.04761 -6.20335 0.31754 0.51128 0.80951 1.36124 1.39628 1.48109 1.60118 1.70720 2.42636 2.94951 3.22093 3.43664 3.55487 3.63122 3.78072 3.85708 4.02502 4.06851 4.10714 4.11994 4.28497 4.35660 4.38972 4.53171 4.62708 4.64407 4.66597 4.79216 4.80204 4.82713 4.93687 4.98345 5.03989 5.09458 5.18119 5.24682 5.29657 5.36183 5.41020 5.47453 5.50515 5.86317 5.90755 5.95270 6.12159 6.30466 6.54693 6.97567 7.23181 7.48197 7.74471 8.98729 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.009663 B = 0.004913 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.025983 B = 5697.990262 C = 7771.116805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 C -0.155 4.155 4 N -0.282 5.282 5 C -0.022 4.022 6 C -0.020 4.020 7 C 0.143 3.857 8 N -0.528 5.528 9 C 0.211 3.789 10 C -0.532 4.532 11 H 0.058 0.942 12 C 0.017 3.983 13 N -0.927 5.927 14 Si 0.945 3.055 15 H -0.269 1.269 16 H -0.291 1.291 17 H -0.270 1.270 18 C 0.113 3.887 19 C 0.134 3.866 20 C -0.166 4.166 21 C -0.090 4.090 22 C -0.173 4.173 23 C 0.081 3.919 24 N -0.492 5.492 25 N -0.300 5.300 26 N -0.135 5.135 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.040 0.960 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.226 0.774 35 H 0.113 0.887 36 H 0.038 0.962 37 H 0.003 0.997 38 H -0.003 1.003 39 H 0.259 0.741 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.114 0.886 43 H 0.145 0.855 44 H 0.167 0.833 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.753 18.365 -3.710 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 C -0.213 4.213 4 N -0.077 5.077 5 C -0.174 4.174 6 C -0.160 4.160 7 C 0.013 3.987 8 N -0.252 5.252 9 C 0.084 3.916 10 C -0.571 4.571 11 H 0.076 0.924 12 C -0.182 4.182 13 N -0.567 5.567 14 Si 0.771 3.229 15 H -0.194 1.194 16 H -0.217 1.217 17 H -0.195 1.195 18 C -0.016 4.016 19 C -0.004 4.004 20 C -0.187 4.187 21 C -0.116 4.116 22 C -0.193 4.193 23 C -0.076 4.076 24 N -0.202 5.202 25 N -0.165 5.165 26 N -0.113 5.113 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.243 0.757 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.015 0.985 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.163 0.837 44 H 0.185 0.815 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.939 17.844 -5.246 19.244 hybrid contribution 1.123 -1.813 1.480 2.596 sum -3.816 16.031 -3.766 16.904 Atomic orbital electron populations 1.22218 0.91841 1.02560 1.05168 1.22131 0.96427 0.95095 0.83704 1.22206 1.02087 0.91128 1.05912 1.47992 1.41321 1.07448 1.10975 1.23630 1.06317 1.02847 0.84597 1.22107 1.05784 0.89891 0.98217 1.20207 0.92134 1.01215 0.85097 1.62381 1.38861 1.15544 1.08435 1.19286 0.94799 0.82657 0.94834 1.21788 1.01114 0.92344 1.41829 0.92380 1.25647 0.98219 0.98446 0.95891 1.70096 1.30665 1.06628 1.49329 0.85754 0.80607 0.77797 0.78733 1.19394 1.21661 1.19451 1.20798 0.91726 1.00794 0.88234 1.21063 0.95357 0.90183 0.93752 1.22128 0.99719 0.98165 0.98656 1.21854 0.92784 0.99687 0.97248 1.22428 1.00932 0.94709 1.01236 1.23296 0.94146 0.97607 0.92553 1.67454 1.01908 1.31485 1.19317 1.75186 1.17471 1.26407 0.97473 1.78180 1.18581 0.98184 1.16379 0.91582 0.86442 0.94083 0.86839 0.91812 0.86709 0.90224 0.75724 0.86879 0.94387 0.97887 0.98475 0.93235 0.88443 0.93517 0.86785 0.83695 0.81542 0.79834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.52 71.98 0.69 -1.92 16 2 C 0.13 2.29 3.85 44.99 0.17 2.47 16 3 C -0.16 -1.60 8.84 71.98 0.64 -0.97 16 4 N -0.28 -8.53 3.25 -327.16 -1.06 -9.59 16 5 C -0.02 -0.64 10.62 83.49 0.89 0.24 16 6 C -0.02 -0.82 6.16 41.59 0.26 -0.56 16 7 C 0.14 5.63 5.37 85.56 0.46 6.08 16 8 N -0.53 -23.30 4.65 -909.97 -4.23 -27.53 16 9 C 0.21 11.61 4.67 85.56 0.40 12.01 16 10 C -0.53 -29.96 7.34 25.60 0.19 -29.77 16 11 H 0.06 3.18 5.95 -2.91 -0.02 3.16 16 12 C 0.02 0.98 5.46 84.65 0.46 1.44 16 13 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 14 Si 0.95 45.82 29.54 68.60 2.03 47.84 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 16 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 17 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.11 4.40 5.10 85.55 0.44 4.84 16 19 C 0.13 5.26 5.64 42.55 0.24 5.50 16 20 C -0.17 -6.61 8.29 22.36 0.19 -6.43 16 21 C -0.09 -2.90 10.18 22.47 0.23 -2.67 16 22 C -0.17 -4.60 10.11 22.36 0.23 -4.37 16 23 C 0.08 2.31 11.18 84.67 0.95 3.25 16 24 N -0.49 -17.58 10.27 -183.89 -1.89 -19.47 16 25 N -0.30 -14.44 11.55 -48.60 -0.56 -15.00 16 26 N -0.14 -5.62 13.16 37.02 0.49 -5.13 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.72 7.18 -2.39 -0.02 0.70 16 34 H 0.23 4.42 7.31 -2.91 -0.02 4.40 16 35 H 0.11 3.37 7.81 -2.39 -0.02 3.35 16 36 H 0.04 1.71 6.17 -2.39 -0.01 1.70 16 37 H 0.00 0.18 6.24 -2.39 -0.01 0.17 16 38 H 0.00 -0.18 6.77 -2.39 -0.02 -0.20 16 39 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.10 3.21 7.86 -2.39 -0.02 3.19 16 41 H 0.05 1.94 6.47 -2.39 -0.02 1.92 16 42 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 43 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 44 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 45 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -82.08 370.52 2.45 -79.63 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.99 Total: 17.70 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 6.41 Total: -10.85 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -6.97 Total: -134.33 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -82.08 2.45 -79.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289286463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.495 kcal (2) G-P(sol) polarization free energy of solvation -82.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds