Wall clock time and date at job start Tue Mar 31 2020 10:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47207 * 2 1 4 4 C 1.37614 * 127.15054 * 84.88337 * 3 2 1 5 5 C 1.47769 * 126.47436 * 0.03864 * 4 3 2 6 6 C 1.39590 * 119.75256 * 179.71382 * 5 4 3 7 7 C 1.38317 * 119.05035 * 180.22924 * 6 5 4 8 8 C 1.38848 * 118.53254 * 359.48384 * 7 6 5 9 9 C 1.38251 * 119.41173 * 0.53588 * 8 7 6 10 10 C 1.50706 * 119.54072 * 179.72608 * 9 8 7 11 11 N 1.31746 * 120.91848 * 359.70857 * 9 8 7 12 12 N 1.31288 * 107.05812 * 179.77485 * 4 3 2 13 13 N 1.28524 * 109.91318 * 0.22617 * 12 4 3 14 14 C 1.31491 * 110.06386 * 359.97438 * 13 12 4 15 15 N 1.38288 * 126.36273 * 180.02562 * 14 13 12 16 16 C 1.46903 * 111.00052 * 294.68786 * 15 14 13 17 17 C 1.46898 * 111.00017 * 58.63896 * 15 14 13 18 18 H 1.09000 * 109.47614 * 300.00029 * 17 15 14 19 19 C 1.53005 * 109.47054 * 60.00126 * 17 15 14 20 20 C 1.50704 * 109.47243 * 179.97438 * 17 15 14 21 21 H 1.07997 * 119.99881 * 0.02562 * 20 17 15 22 22 C 1.37878 * 120.00051 * 180.02562 * 20 17 15 23 23 N 1.31513 * 119.99901 * 180.02562 * 22 20 17 24 24 Si 1.86804 * 120.00012 * 359.97438 * 22 20 17 25 25 H 1.48499 * 109.47114 * 90.00035 * 24 22 20 26 26 H 1.48497 * 109.47099 * 210.00065 * 24 22 20 27 27 H 1.48502 * 109.47176 * 330.00455 * 24 22 20 28 28 H 1.09004 * 109.47082 * 177.00337 * 1 2 3 29 29 H 1.08998 * 109.47212 * 297.00361 * 1 2 3 30 30 H 1.08998 * 109.46765 * 57.01025 * 1 2 3 31 31 H 1.09001 * 109.47614 * 240.00040 * 2 1 3 32 32 H 1.08999 * 109.47225 * 119.99949 * 2 1 3 33 33 H 1.07996 * 120.47266 * 359.95046 * 6 5 4 34 34 H 1.07999 * 120.73134 * 179.72071 * 7 6 5 35 35 H 1.07998 * 120.29111 * 180.28553 * 8 7 6 36 36 H 1.08997 * 109.47303 * 269.97658 * 10 9 8 37 37 H 1.08996 * 109.47312 * 29.97828 * 10 9 8 38 38 H 1.09003 * 109.46909 * 149.97796 * 10 9 8 39 39 H 1.08996 * 109.47232 * 66.12854 * 16 15 14 40 40 H 1.08999 * 109.46879 * 186.12506 * 16 15 14 41 41 H 1.09002 * 109.47094 * 306.12953 * 16 15 14 42 42 H 1.09000 * 109.46989 * 59.99520 * 19 17 15 43 43 H 1.08998 * 109.47561 * 179.97438 * 19 17 15 44 44 H 1.09001 * 109.46859 * 300.00539 * 19 17 15 45 45 H 0.97006 * 119.99859 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2032 2.1974 1.0925 5 6 1.9458 1.8465 2.5047 6 6 2.1893 2.7866 3.5075 7 6 1.9479 2.4411 4.8249 8 6 1.4602 1.1702 5.0985 9 6 1.2416 0.2880 4.0568 10 6 0.7182 -1.0943 4.3511 11 7 1.4841 0.6390 2.8103 12 7 2.6567 3.3448 0.6437 13 7 2.7618 3.3034 -0.6366 14 6 2.3820 2.1262 -1.0825 15 7 2.3601 1.7179 -2.4036 16 6 1.3820 2.4935 -3.1781 17 6 3.6975 1.8074 -3.0045 18 1 4.0461 2.8393 -2.9634 19 6 4.6656 0.9108 -2.2300 20 6 3.6343 1.3548 -4.4406 21 1 2.6945 1.0334 -4.8646 22 6 4.7763 1.3512 -5.2132 23 7 4.7210 0.9568 -6.4665 24 14 6.4018 1.9079 -4.4800 25 1 7.1008 0.7417 -3.8830 26 1 7.2488 2.5001 -5.5464 27 1 6.1478 2.9246 -3.4278 28 1 -0.3633 -1.0263 -0.0537 29 1 -0.3633 0.4666 0.9156 30 1 -0.3633 0.5596 -0.8620 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.5651 3.7680 3.2586 34 1 2.1310 3.1456 5.6226 35 1 1.2573 0.8721 6.1166 36 1 1.5555 -1.7732 4.5120 37 1 0.0971 -1.0647 5.2463 38 1 0.1232 -1.4447 3.5076 39 1 1.7052 3.5329 -3.2346 40 1 1.3064 2.0814 -4.1844 41 1 0.4087 2.4417 -2.6901 42 1 4.3170 -0.1211 -2.2711 43 1 5.6580 0.9768 -2.6761 44 1 4.7114 1.2377 -1.1911 45 1 5.5244 0.9546 -7.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291303987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:09 Heat of formation + Delta-G solvation = 135.016864 kcal Electronic energy + Delta-G solvation = -26909.499875 eV Core-core repulsion = 23350.331907 eV Total energy + Delta-G solvation = -3559.167969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.62211 -40.33076 -37.30046 -35.41441 -33.60926 -32.94812 -32.60349 -30.47784 -30.31153 -29.50068 -27.57786 -25.68295 -24.63574 -24.33095 -23.64091 -22.69166 -21.52092 -20.65224 -19.40657 -17.30220 -16.94996 -16.58573 -16.26076 -16.02030 -15.66451 -15.12130 -14.97117 -14.58475 -14.08498 -13.91516 -13.67708 -13.34961 -13.30096 -13.00455 -12.78951 -12.63912 -12.55832 -12.24402 -12.20411 -12.10223 -11.80620 -11.32369 -11.20541 -11.08307 -10.77883 -10.73173 -10.37075 -10.23637 -10.19578 -9.91944 -9.72576 -9.63070 -9.50449 -9.25333 -8.64620 -8.27722 -7.95325 -6.15131 -4.15859 0.51319 0.99121 2.15472 2.52750 3.03251 3.24229 3.36873 3.40589 3.58128 3.68149 4.32527 4.34927 4.39820 4.45630 4.74734 4.80860 4.97975 5.07376 5.17029 5.18157 5.25685 5.28361 5.34846 5.39961 5.49149 5.56912 5.72666 5.74547 5.79197 5.90249 5.93620 6.05849 6.16995 6.21480 6.25128 6.31041 6.37752 6.39764 6.44633 6.64596 6.76328 6.93326 7.10057 7.41140 7.63055 7.64057 7.93038 8.49462 8.87441 8.97199 9.45150 10.96672 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.003666 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.504613 B = 7636.408938 C = 7936.199508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 N -0.444 5.444 4 C 0.190 3.810 5 C 0.221 3.779 6 C -0.137 4.137 7 C -0.069 4.069 8 C -0.172 4.172 9 C 0.133 3.867 10 C -0.103 4.103 11 N -0.478 5.478 12 N -0.261 5.261 13 N -0.315 5.315 14 C 0.387 3.613 15 N -0.462 5.462 16 C 0.051 3.949 17 C 0.195 3.805 18 H 0.022 0.978 19 C -0.145 4.145 20 C -0.513 4.513 21 H 0.087 0.913 22 C 0.078 3.922 23 N -0.893 5.893 24 Si 0.879 3.121 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.264 1.264 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.021 0.979 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -3.001 23.016 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.011 4.011 3 N -0.135 5.135 4 C -0.074 4.074 5 C 0.082 3.918 6 C -0.159 4.159 7 C -0.094 4.094 8 C -0.192 4.192 9 C -0.006 4.006 10 C -0.161 4.161 11 N -0.190 5.190 12 N -0.106 5.106 13 N -0.161 5.161 14 C 0.031 3.969 15 N -0.189 5.189 16 C -0.096 4.096 17 C 0.089 3.911 18 H 0.040 0.960 19 C -0.203 4.203 20 C -0.551 4.551 21 H 0.105 0.895 22 C -0.125 4.125 23 N -0.531 5.531 24 Si 0.709 3.291 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.189 1.189 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.807 -2.762 22.088 23.939 hybrid contribution 0.984 0.231 0.952 1.388 sum -7.823 -2.532 23.039 24.463 Atomic orbital electron populations 1.21984 0.94172 1.02785 1.02354 1.21940 0.95662 0.78320 1.05215 1.46465 1.47610 1.13793 1.05667 1.21975 1.08044 0.89743 0.87653 1.18050 0.95639 0.89824 0.88238 1.22013 1.00440 1.01182 0.92259 1.21546 0.95217 0.96251 0.96408 1.22028 1.02022 0.94670 1.00498 1.21190 0.94961 0.96772 0.87703 1.20727 1.01428 0.91132 1.02782 1.67421 1.12690 1.17130 1.21727 1.74255 1.15223 1.17109 1.04052 1.74798 1.21426 1.17483 1.02440 1.22810 0.97400 0.86757 0.89888 1.58938 1.12020 1.53717 0.94178 1.22259 0.92144 0.96164 0.99068 1.19854 0.81259 0.95529 0.94447 0.96020 1.22179 0.99554 1.01376 0.97196 1.20845 0.97486 1.44883 0.91853 0.89472 1.24817 0.98575 0.94418 0.94678 1.69854 1.29290 1.46962 1.06962 0.86978 0.84222 0.79401 0.78536 1.20481 1.22078 1.18909 0.90723 0.92239 0.92248 0.88074 0.87874 0.83374 0.84166 0.84602 0.90259 0.90590 0.90300 0.94376 0.88431 0.93475 0.92179 0.93189 0.95952 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.22 37.16 0.38 -1.50 16 2 C 0.11 1.59 6.20 -4.04 -0.03 1.56 16 3 N -0.44 -7.83 2.83 -114.73 -0.32 -8.16 16 4 C 0.19 3.32 7.82 -153.74 -1.20 2.11 16 5 C 0.22 3.11 6.75 -83.03 -0.56 2.55 16 6 C -0.14 -1.59 9.74 -39.05 -0.38 -1.97 16 7 C -0.07 -0.58 10.16 -39.33 -0.40 -0.98 16 8 C -0.17 -1.35 9.73 -39.35 -0.38 -1.73 16 9 C 0.13 1.26 6.78 -82.62 -0.56 0.70 16 10 C -0.10 -0.65 10.17 36.01 0.37 -0.28 16 11 N -0.48 -5.93 7.44 -6.11 -0.05 -5.98 16 12 N -0.26 -5.19 11.86 32.59 0.39 -4.80 16 13 N -0.32 -6.91 12.10 30.28 0.37 -6.55 16 14 C 0.39 7.93 5.01 -319.11 -1.60 6.33 16 15 N -0.46 -9.86 4.61 -176.13 -0.81 -10.67 16 16 C 0.05 0.99 9.14 60.07 0.55 1.54 16 17 C 0.19 4.74 1.58 -68.86 -0.11 4.64 16 18 H 0.02 0.58 7.13 -51.93 -0.37 0.21 16 19 C -0.15 -3.37 8.54 37.16 0.32 -3.05 16 20 C -0.51 -13.92 8.53 -34.44 -0.29 -14.21 16 21 H 0.09 2.50 6.64 -52.49 -0.35 2.15 16 22 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 23 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 24 Si 0.88 22.03 24.37 -169.99 -4.14 17.89 16 25 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.26 -6.62 6.53 56.52 0.37 -6.26 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.74 7.72 -51.93 -0.40 0.34 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.52 8.11 -51.93 -0.42 1.10 16 32 H 0.10 1.37 6.59 -51.93 -0.34 1.03 16 33 H 0.15 1.69 7.86 -52.49 -0.41 1.28 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.97 6.32 -51.93 -0.33 1.64 16 41 H 0.05 0.81 8.10 -51.93 -0.42 0.38 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 44 H 0.02 0.49 7.22 -51.93 -0.38 0.12 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -32.50 363.80 -8.88 -41.39 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.57 Total: -0.66 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -4.00 Total: -2.20 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.34 Total: -61.90 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.50 -8.88 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291303987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.403 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds