Wall clock time and date at job start Tue Mar 31 2020 10:55:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46508 * 109.47207 * 2 1
4 4 C 1.37614 * 127.15054 * 84.88337 * 3 2 1
5 5 C 1.47769 * 126.47436 * 0.03864 * 4 3 2
6 6 C 1.39590 * 119.75256 * 179.71382 * 5 4 3
7 7 C 1.38317 * 119.05035 * 180.22924 * 6 5 4
8 8 C 1.38848 * 118.53254 * 359.48384 * 7 6 5
9 9 C 1.38251 * 119.41173 * 0.53588 * 8 7 6
10 10 C 1.50706 * 119.54072 * 179.72608 * 9 8 7
11 11 N 1.31746 * 120.91848 * 359.70857 * 9 8 7
12 12 N 1.31288 * 107.05812 * 179.77485 * 4 3 2
13 13 N 1.28524 * 109.91318 * 0.22617 * 12 4 3
14 14 C 1.31491 * 110.06386 * 359.97438 * 13 12 4
15 15 N 1.38288 * 126.36273 * 180.02562 * 14 13 12
16 16 C 1.46903 * 111.00052 * 294.68786 * 15 14 13
17 17 C 1.46898 * 111.00017 * 58.63896 * 15 14 13
18 18 H 1.09000 * 109.47614 * 300.00029 * 17 15 14
19 19 C 1.53005 * 109.47054 * 60.00126 * 17 15 14
20 20 C 1.50704 * 109.47243 * 179.97438 * 17 15 14
21 21 H 1.07997 * 119.99881 * 0.02562 * 20 17 15
22 22 C 1.37878 * 120.00051 * 180.02562 * 20 17 15
23 23 N 1.31513 * 119.99901 * 180.02562 * 22 20 17
24 24 Si 1.86804 * 120.00012 * 359.97438 * 22 20 17
25 25 H 1.48499 * 109.47114 * 90.00035 * 24 22 20
26 26 H 1.48497 * 109.47099 * 210.00065 * 24 22 20
27 27 H 1.48502 * 109.47176 * 330.00455 * 24 22 20
28 28 H 1.09004 * 109.47082 * 177.00337 * 1 2 3
29 29 H 1.08998 * 109.47212 * 297.00361 * 1 2 3
30 30 H 1.08998 * 109.46765 * 57.01025 * 1 2 3
31 31 H 1.09001 * 109.47614 * 240.00040 * 2 1 3
32 32 H 1.08999 * 109.47225 * 119.99949 * 2 1 3
33 33 H 1.07996 * 120.47266 * 359.95046 * 6 5 4
34 34 H 1.07999 * 120.73134 * 179.72071 * 7 6 5
35 35 H 1.07998 * 120.29111 * 180.28553 * 8 7 6
36 36 H 1.08997 * 109.47303 * 269.97658 * 10 9 8
37 37 H 1.08996 * 109.47312 * 29.97828 * 10 9 8
38 38 H 1.09003 * 109.46909 * 149.97796 * 10 9 8
39 39 H 1.08996 * 109.47232 * 66.12854 * 16 15 14
40 40 H 1.08999 * 109.46879 * 186.12506 * 16 15 14
41 41 H 1.09002 * 109.47094 * 306.12953 * 16 15 14
42 42 H 1.09000 * 109.46989 * 59.99520 * 19 17 15
43 43 H 1.08998 * 109.47561 * 179.97438 * 19 17 15
44 44 H 1.09001 * 109.46859 * 300.00539 * 19 17 15
45 45 H 0.97006 * 119.99859 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2032 2.1974 1.0925
5 6 1.9458 1.8465 2.5047
6 6 2.1893 2.7866 3.5075
7 6 1.9479 2.4411 4.8249
8 6 1.4602 1.1702 5.0985
9 6 1.2416 0.2880 4.0568
10 6 0.7182 -1.0943 4.3511
11 7 1.4841 0.6390 2.8103
12 7 2.6567 3.3448 0.6437
13 7 2.7618 3.3034 -0.6366
14 6 2.3820 2.1262 -1.0825
15 7 2.3601 1.7179 -2.4036
16 6 1.3820 2.4935 -3.1781
17 6 3.6975 1.8074 -3.0045
18 1 4.0461 2.8393 -2.9634
19 6 4.6656 0.9108 -2.2300
20 6 3.6343 1.3548 -4.4406
21 1 2.6945 1.0334 -4.8646
22 6 4.7763 1.3512 -5.2132
23 7 4.7210 0.9568 -6.4665
24 14 6.4018 1.9079 -4.4800
25 1 7.1008 0.7417 -3.8830
26 1 7.2488 2.5001 -5.5464
27 1 6.1478 2.9246 -3.4278
28 1 -0.3633 -1.0263 -0.0537
29 1 -0.3633 0.4666 0.9156
30 1 -0.3633 0.5596 -0.8620
31 1 1.8934 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8900
33 1 2.5651 3.7680 3.2586
34 1 2.1310 3.1456 5.6226
35 1 1.2573 0.8721 6.1166
36 1 1.5555 -1.7732 4.5120
37 1 0.0971 -1.0647 5.2463
38 1 0.1232 -1.4447 3.5076
39 1 1.7052 3.5329 -3.2346
40 1 1.3064 2.0814 -4.1844
41 1 0.4087 2.4417 -2.6901
42 1 4.3170 -0.1211 -2.2711
43 1 5.6580 0.9768 -2.6761
44 1 4.7114 1.2377 -1.1911
45 1 5.5244 0.9546 -7.0102
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000291303987.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:09
Heat of formation + Delta-G solvation = 135.016864 kcal
Electronic energy + Delta-G solvation = -26909.499875 eV
Core-core repulsion = 23350.331907 eV
Total energy + Delta-G solvation = -3559.167969 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.175 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.62211 -40.33076 -37.30046 -35.41441 -33.60926 -32.94812 -32.60349 -30.47784
-30.31153 -29.50068 -27.57786 -25.68295 -24.63574 -24.33095 -23.64091 -22.69166
-21.52092 -20.65224 -19.40657 -17.30220 -16.94996 -16.58573 -16.26076 -16.02030
-15.66451 -15.12130 -14.97117 -14.58475 -14.08498 -13.91516 -13.67708 -13.34961
-13.30096 -13.00455 -12.78951 -12.63912 -12.55832 -12.24402 -12.20411 -12.10223
-11.80620 -11.32369 -11.20541 -11.08307 -10.77883 -10.73173 -10.37075 -10.23637
-10.19578 -9.91944 -9.72576 -9.63070 -9.50449 -9.25333 -8.64620 -8.27722
-7.95325 -6.15131 -4.15859 0.51319 0.99121 2.15472 2.52750 3.03251
3.24229 3.36873 3.40589 3.58128 3.68149 4.32527 4.34927 4.39820
4.45630 4.74734 4.80860 4.97975 5.07376 5.17029 5.18157 5.25685
5.28361 5.34846 5.39961 5.49149 5.56912 5.72666 5.74547 5.79197
5.90249 5.93620 6.05849 6.16995 6.21480 6.25128 6.31041 6.37752
6.39764 6.44633 6.64596 6.76328 6.93326 7.10057 7.41140 7.63055
7.64057 7.93038 8.49462 8.87441 8.97199 9.45150 10.96672
Molecular weight = 315.18amu
Principal moments of inertia in cm(-1)
A = 0.021442 B = 0.003666 C = 0.003527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.504613 B = 7636.408938 C = 7936.199508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.111 3.889
3 N -0.444 5.444
4 C 0.190 3.810
5 C 0.221 3.779
6 C -0.137 4.137
7 C -0.069 4.069
8 C -0.172 4.172
9 C 0.133 3.867
10 C -0.103 4.103
11 N -0.478 5.478
12 N -0.261 5.261
13 N -0.315 5.315
14 C 0.387 3.613
15 N -0.462 5.462
16 C 0.051 3.949
17 C 0.195 3.805
18 H 0.022 0.978
19 C -0.145 4.145
20 C -0.513 4.513
21 H 0.087 0.913
22 C 0.078 3.922
23 N -0.893 5.893
24 Si 0.879 3.121
25 H -0.278 1.278
26 H -0.293 1.293
27 H -0.264 1.264
28 H 0.074 0.926
29 H 0.059 0.941
30 H 0.058 0.942
31 H 0.101 0.899
32 H 0.103 0.897
33 H 0.148 0.852
34 H 0.141 0.859
35 H 0.136 0.864
36 H 0.079 0.921
37 H 0.075 0.925
38 H 0.078 0.922
39 H 0.038 0.962
40 H 0.097 0.903
41 H 0.046 0.954
42 H 0.059 0.941
43 H 0.050 0.950
44 H 0.021 0.979
45 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.109 -3.001 23.016 24.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.011 4.011
3 N -0.135 5.135
4 C -0.074 4.074
5 C 0.082 3.918
6 C -0.159 4.159
7 C -0.094 4.094
8 C -0.192 4.192
9 C -0.006 4.006
10 C -0.161 4.161
11 N -0.190 5.190
12 N -0.106 5.106
13 N -0.161 5.161
14 C 0.031 3.969
15 N -0.189 5.189
16 C -0.096 4.096
17 C 0.089 3.911
18 H 0.040 0.960
19 C -0.203 4.203
20 C -0.551 4.551
21 H 0.105 0.895
22 C -0.125 4.125
23 N -0.531 5.531
24 Si 0.709 3.291
25 H -0.205 1.205
26 H -0.221 1.221
27 H -0.189 1.189
28 H 0.093 0.907
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.119 0.881
32 H 0.121 0.879
33 H 0.166 0.834
34 H 0.158 0.842
35 H 0.154 0.846
36 H 0.097 0.903
37 H 0.094 0.906
38 H 0.097 0.903
39 H 0.056 0.944
40 H 0.116 0.884
41 H 0.065 0.935
42 H 0.078 0.922
43 H 0.068 0.932
44 H 0.040 0.960
45 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -8.807 -2.762 22.088 23.939
hybrid contribution 0.984 0.231 0.952 1.388
sum -7.823 -2.532 23.039 24.463
Atomic orbital electron populations
1.21984 0.94172 1.02785 1.02354 1.21940 0.95662 0.78320 1.05215
1.46465 1.47610 1.13793 1.05667 1.21975 1.08044 0.89743 0.87653
1.18050 0.95639 0.89824 0.88238 1.22013 1.00440 1.01182 0.92259
1.21546 0.95217 0.96251 0.96408 1.22028 1.02022 0.94670 1.00498
1.21190 0.94961 0.96772 0.87703 1.20727 1.01428 0.91132 1.02782
1.67421 1.12690 1.17130 1.21727 1.74255 1.15223 1.17109 1.04052
1.74798 1.21426 1.17483 1.02440 1.22810 0.97400 0.86757 0.89888
1.58938 1.12020 1.53717 0.94178 1.22259 0.92144 0.96164 0.99068
1.19854 0.81259 0.95529 0.94447 0.96020 1.22179 0.99554 1.01376
0.97196 1.20845 0.97486 1.44883 0.91853 0.89472 1.24817 0.98575
0.94418 0.94678 1.69854 1.29290 1.46962 1.06962 0.86978 0.84222
0.79401 0.78536 1.20481 1.22078 1.18909 0.90723 0.92239 0.92248
0.88074 0.87874 0.83374 0.84166 0.84602 0.90259 0.90590 0.90300
0.94376 0.88431 0.93475 0.92179 0.93189 0.95952 0.92375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.88 10.22 37.16 0.38 -1.50 16
2 C 0.11 1.59 6.20 -4.04 -0.03 1.56 16
3 N -0.44 -7.83 2.83 -114.73 -0.32 -8.16 16
4 C 0.19 3.32 7.82 -153.74 -1.20 2.11 16
5 C 0.22 3.11 6.75 -83.03 -0.56 2.55 16
6 C -0.14 -1.59 9.74 -39.05 -0.38 -1.97 16
7 C -0.07 -0.58 10.16 -39.33 -0.40 -0.98 16
8 C -0.17 -1.35 9.73 -39.35 -0.38 -1.73 16
9 C 0.13 1.26 6.78 -82.62 -0.56 0.70 16
10 C -0.10 -0.65 10.17 36.01 0.37 -0.28 16
11 N -0.48 -5.93 7.44 -6.11 -0.05 -5.98 16
12 N -0.26 -5.19 11.86 32.59 0.39 -4.80 16
13 N -0.32 -6.91 12.10 30.28 0.37 -6.55 16
14 C 0.39 7.93 5.01 -319.11 -1.60 6.33 16
15 N -0.46 -9.86 4.61 -176.13 -0.81 -10.67 16
16 C 0.05 0.99 9.14 60.07 0.55 1.54 16
17 C 0.19 4.74 1.58 -68.86 -0.11 4.64 16
18 H 0.02 0.58 7.13 -51.93 -0.37 0.21 16
19 C -0.15 -3.37 8.54 37.16 0.32 -3.05 16
20 C -0.51 -13.92 8.53 -34.44 -0.29 -14.21 16
21 H 0.09 2.50 6.64 -52.49 -0.35 2.15 16
22 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16
23 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16
24 Si 0.88 22.03 24.37 -169.99 -4.14 17.89 16
25 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16
26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
27 H -0.26 -6.62 6.53 56.52 0.37 -6.26 16
28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
29 H 0.06 0.74 7.72 -51.93 -0.40 0.34 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.10 1.52 8.11 -51.93 -0.42 1.10 16
32 H 0.10 1.37 6.59 -51.93 -0.34 1.03 16
33 H 0.15 1.69 7.86 -52.49 -0.41 1.28 16
34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16
35 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16
36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
37 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16
38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.10 1.97 6.32 -51.93 -0.33 1.64 16
41 H 0.05 0.81 8.10 -51.93 -0.42 0.38 16
42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
43 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16
44 H 0.02 0.49 7.22 -51.93 -0.38 0.12 16
45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
LS Contribution 363.80 15.07 5.48 5.48
Total: -1.00 -32.50 363.80 -8.88 -41.39
By element:
Atomic # 1 Polarization: 5.92 SS G_CDS: -6.57 Total: -0.66 kcal
Atomic # 6 Polarization: 1.80 SS G_CDS: -4.00 Total: -2.20 kcal
Atomic # 7 Polarization: -62.25 SS G_CDS: 0.34 Total: -61.90 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -32.50 -8.88 -41.39 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291303987.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 176.403 kcal
(2) G-P(sol) polarization free energy of solvation -32.502 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal
(6) G-S(sol) free energy of system = (1) + (5) 135.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds