Wall clock time and date at job start Tue Mar 31 2020 10:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47207 * 2 1 4 4 C 1.37614 * 127.15054 * 84.88337 * 3 2 1 5 5 C 1.47769 * 126.47436 * 0.03864 * 4 3 2 6 6 C 1.39590 * 119.75256 * 179.71382 * 5 4 3 7 7 C 1.38317 * 119.05035 * 180.22924 * 6 5 4 8 8 C 1.38848 * 118.53254 * 359.48384 * 7 6 5 9 9 C 1.38251 * 119.41173 * 0.53588 * 8 7 6 10 10 C 1.50706 * 119.54072 * 179.72608 * 9 8 7 11 11 N 1.31746 * 120.91848 * 359.70857 * 9 8 7 12 12 N 1.31288 * 107.05812 * 179.77485 * 4 3 2 13 13 N 1.28524 * 109.91318 * 0.22617 * 12 4 3 14 14 C 1.31491 * 110.06386 * 359.97438 * 13 12 4 15 15 N 1.38288 * 126.36273 * 180.02562 * 14 13 12 16 16 C 1.46903 * 111.00052 * 294.68786 * 15 14 13 17 17 C 1.46898 * 111.00017 * 58.63896 * 15 14 13 18 18 H 1.09000 * 109.47614 * 300.00029 * 17 15 14 19 19 C 1.53005 * 109.47054 * 60.00126 * 17 15 14 20 20 C 1.50704 * 109.47243 * 179.97438 * 17 15 14 21 21 H 1.07997 * 119.99881 * 0.02562 * 20 17 15 22 22 C 1.37878 * 120.00051 * 180.02562 * 20 17 15 23 23 N 1.31513 * 119.99901 * 180.02562 * 22 20 17 24 24 Si 1.86804 * 120.00012 * 359.97438 * 22 20 17 25 25 H 1.48499 * 109.47114 * 90.00035 * 24 22 20 26 26 H 1.48497 * 109.47099 * 210.00065 * 24 22 20 27 27 H 1.48502 * 109.47176 * 330.00455 * 24 22 20 28 28 H 1.09004 * 109.47082 * 177.00337 * 1 2 3 29 29 H 1.08998 * 109.47212 * 297.00361 * 1 2 3 30 30 H 1.08998 * 109.46765 * 57.01025 * 1 2 3 31 31 H 1.09001 * 109.47614 * 240.00040 * 2 1 3 32 32 H 1.08999 * 109.47225 * 119.99949 * 2 1 3 33 33 H 1.07996 * 120.47266 * 359.95046 * 6 5 4 34 34 H 1.07999 * 120.73134 * 179.72071 * 7 6 5 35 35 H 1.07998 * 120.29111 * 180.28553 * 8 7 6 36 36 H 1.08997 * 109.47303 * 269.97658 * 10 9 8 37 37 H 1.08996 * 109.47312 * 29.97828 * 10 9 8 38 38 H 1.09003 * 109.46909 * 149.97796 * 10 9 8 39 39 H 1.08996 * 109.47232 * 66.12854 * 16 15 14 40 40 H 1.08999 * 109.46879 * 186.12506 * 16 15 14 41 41 H 1.09002 * 109.47094 * 306.12953 * 16 15 14 42 42 H 1.09000 * 109.46989 * 59.99520 * 19 17 15 43 43 H 1.08998 * 109.47561 * 179.97438 * 19 17 15 44 44 H 1.09001 * 109.46859 * 300.00539 * 19 17 15 45 45 H 0.97006 * 119.99859 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2032 2.1974 1.0925 5 6 1.9458 1.8465 2.5047 6 6 2.1893 2.7866 3.5075 7 6 1.9479 2.4411 4.8249 8 6 1.4602 1.1702 5.0985 9 6 1.2416 0.2880 4.0568 10 6 0.7182 -1.0943 4.3511 11 7 1.4841 0.6390 2.8103 12 7 2.6567 3.3448 0.6437 13 7 2.7618 3.3034 -0.6366 14 6 2.3820 2.1262 -1.0825 15 7 2.3601 1.7179 -2.4036 16 6 1.3820 2.4935 -3.1781 17 6 3.6975 1.8074 -3.0045 18 1 4.0461 2.8393 -2.9634 19 6 4.6656 0.9108 -2.2300 20 6 3.6343 1.3548 -4.4406 21 1 2.6945 1.0334 -4.8646 22 6 4.7763 1.3512 -5.2132 23 7 4.7210 0.9568 -6.4665 24 14 6.4018 1.9079 -4.4800 25 1 7.1008 0.7417 -3.8830 26 1 7.2488 2.5001 -5.5464 27 1 6.1478 2.9246 -3.4278 28 1 -0.3633 -1.0263 -0.0537 29 1 -0.3633 0.4666 0.9156 30 1 -0.3633 0.5596 -0.8620 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.5651 3.7680 3.2586 34 1 2.1310 3.1456 5.6226 35 1 1.2573 0.8721 6.1166 36 1 1.5555 -1.7732 4.5120 37 1 0.0971 -1.0647 5.2463 38 1 0.1232 -1.4447 3.5076 39 1 1.7052 3.5329 -3.2346 40 1 1.3064 2.0814 -4.1844 41 1 0.4087 2.4417 -2.6901 42 1 4.3170 -0.1211 -2.2711 43 1 5.6580 0.9768 -2.6761 44 1 4.7114 1.2377 -1.1911 45 1 5.5244 0.9546 -7.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291303987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:08 Heat of formation + Delta-G solvation = 115.385593 kcal Electronic energy + Delta-G solvation = -26910.351151 eV Core-core repulsion = 23350.331907 eV Total energy + Delta-G solvation = -3560.019245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.05078 -41.13212 -39.04366 -36.69736 -34.99042 -34.26859 -33.56667 -32.36136 -31.52852 -30.76740 -28.44530 -27.45114 -26.33920 -25.55197 -24.77668 -23.75673 -22.92579 -21.84570 -20.99240 -19.00983 -18.41943 -17.76563 -17.38181 -17.28002 -16.86547 -16.59277 -16.47156 -15.70919 -15.43186 -15.18238 -15.07258 -14.67618 -14.53334 -14.23620 -14.05276 -13.95643 -13.70679 -13.38863 -13.29507 -13.05906 -12.99498 -12.84208 -12.78278 -12.57041 -12.53333 -12.30131 -12.21955 -11.74374 -11.60017 -11.34420 -11.26182 -10.99776 -10.80780 -10.58599 -10.53468 -9.72127 -9.44849 -8.34806 -6.38492 -0.41571 0.26649 0.86022 1.17542 1.23012 1.32173 1.40309 1.65557 2.25255 2.55910 2.80231 2.85677 2.99985 3.46876 3.70602 3.85983 3.92482 4.00919 4.10814 4.12050 4.24903 4.34201 4.36059 4.38572 4.45121 4.48037 4.52340 4.61673 4.66501 4.72552 4.79174 4.81005 4.82645 4.86932 4.99641 5.10856 5.14238 5.16944 5.19631 5.23217 5.25963 5.40868 5.54716 5.71703 5.77136 6.11525 6.49921 6.66126 6.83378 7.25379 7.51094 8.80082 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.003666 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.504613 B = 7636.408938 C = 7936.199508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.108 3.892 3 N -0.442 5.442 4 C 0.212 3.788 5 C 0.179 3.821 6 C -0.144 4.144 7 C -0.063 4.063 8 C -0.151 4.151 9 C 0.120 3.880 10 C -0.101 4.101 11 N -0.491 5.491 12 N -0.294 5.294 13 N -0.349 5.349 14 C 0.367 3.633 15 N -0.458 5.458 16 C 0.056 3.944 17 C 0.203 3.797 18 H -0.002 1.002 19 C -0.135 4.135 20 C -0.508 4.508 21 H 0.064 0.936 22 C 0.033 3.967 23 N -0.932 5.932 24 Si 0.929 3.071 25 H -0.263 1.263 26 H -0.289 1.289 27 H -0.268 1.268 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.026 0.974 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 -4.321 27.178 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 N -0.133 5.133 4 C -0.054 4.054 5 C 0.042 3.958 6 C -0.166 4.166 7 C -0.088 4.088 8 C -0.171 4.171 9 C -0.019 4.019 10 C -0.158 4.158 11 N -0.203 5.203 12 N -0.137 5.137 13 N -0.194 5.194 14 C 0.010 3.990 15 N -0.184 5.184 16 C -0.091 4.091 17 C 0.096 3.904 18 H 0.015 0.985 19 C -0.193 4.193 20 C -0.546 4.546 21 H 0.082 0.918 22 C -0.166 4.166 23 N -0.571 5.571 24 Si 0.757 3.243 25 H -0.188 1.188 26 H -0.216 1.216 27 H -0.193 1.193 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.193 0.807 35 H 0.195 0.805 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.437 -4.084 26.258 28.200 hybrid contribution 1.026 0.580 -0.090 1.182 sum -8.411 -3.504 26.168 27.709 Atomic orbital electron populations 1.21910 0.92349 1.04340 1.01499 1.22171 0.97096 0.76688 1.05311 1.46649 1.47157 1.14618 1.04840 1.22704 1.04901 0.88671 0.89090 1.17978 0.99374 0.91676 0.86747 1.22111 1.00530 1.00528 0.93409 1.21964 0.93917 0.97323 0.95635 1.22542 0.98921 0.93587 1.02009 1.21866 0.94492 0.98482 0.87097 1.20833 1.01962 0.89236 1.03792 1.67335 1.12900 1.16379 1.23669 1.74169 1.17599 1.18718 1.03226 1.74668 1.22418 1.18628 1.03735 1.22582 0.99370 0.87272 0.89743 1.58824 1.10574 1.54046 0.94934 1.22219 0.93044 0.95122 0.98754 1.19565 0.83335 0.94153 0.93366 0.98483 1.22027 0.98730 1.01420 0.97086 1.20980 0.96526 1.43773 0.93319 0.91770 1.25446 1.01577 0.94689 0.94922 1.69953 1.30323 1.48666 1.08196 0.86154 0.80957 0.79369 0.77820 1.18848 1.21649 1.19314 0.87827 0.92379 0.93744 0.88983 0.86589 0.84156 0.80655 0.80493 0.89401 0.87838 0.90835 0.95579 0.89466 0.90968 0.91388 0.93752 0.95489 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 10.22 71.98 0.74 -2.55 16 2 C 0.11 3.02 6.20 86.38 0.54 3.55 16 3 N -0.44 -15.66 2.83 -516.89 -1.46 -17.12 16 4 C 0.21 7.45 7.82 136.17 1.07 8.52 16 5 C 0.18 4.87 6.75 41.84 0.28 5.16 16 6 C -0.14 -3.12 9.74 22.62 0.22 -2.90 16 7 C -0.06 -0.82 10.16 22.43 0.23 -0.60 16 8 C -0.15 -1.63 9.73 22.42 0.22 -1.41 16 9 C 0.12 1.84 6.78 42.58 0.29 2.13 16 10 C -0.10 -0.85 10.17 71.24 0.72 -0.13 16 11 N -0.49 -11.17 7.44 -173.25 -1.29 -12.46 16 12 N -0.29 -11.98 11.86 -50.82 -0.60 -12.58 16 13 N -0.35 -15.80 12.10 -58.11 -0.70 -16.51 16 14 C 0.37 15.39 5.01 260.19 1.30 16.69 16 15 N -0.46 -20.06 4.61 -711.15 -3.28 -23.34 16 16 C 0.06 2.26 9.14 127.69 1.17 3.43 16 17 C 0.20 10.10 1.58 44.17 0.07 10.17 16 18 H 0.00 -0.13 7.13 -2.39 -0.02 -0.15 16 19 C -0.14 -6.27 8.54 71.98 0.62 -5.65 16 20 C -0.51 -28.35 8.53 25.60 0.22 -28.13 16 21 H 0.06 3.82 6.64 -2.91 -0.02 3.80 16 22 C 0.03 1.90 5.45 84.66 0.46 2.36 16 23 N -0.93 -56.48 13.96 21.45 0.30 -56.18 16 24 Si 0.93 45.85 24.37 68.60 1.67 47.52 16 25 H -0.26 -12.25 6.87 99.48 0.68 -11.56 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.27 -13.32 6.53 99.48 0.65 -12.67 16 28 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.36 7.72 -2.39 -0.02 1.34 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 32 H 0.12 2.93 6.59 -2.39 -0.02 2.91 16 33 H 0.14 3.17 7.86 -2.91 -0.02 3.15 16 34 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 35 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.32 8.08 -2.39 -0.02 0.30 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 3.68 6.32 -2.39 -0.02 3.67 16 41 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 42 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.04 2.09 3.27 -2.39 -0.01 2.08 16 44 H 0.03 1.19 7.22 -2.39 -0.02 1.18 16 45 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -73.41 363.80 3.68 -69.73 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.91 Total: 10.28 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 8.13 Total: 10.65 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -7.04 Total: -138.17 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -73.41 3.68 -69.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291303987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.114 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds