Wall clock time and date at job start Tue Mar 31 2020 11:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99893 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47431 * 324.99393 * 14 13 11 16 16 C 1.52998 * 109.47232 * 84.99861 * 14 13 11 17 17 C 1.52997 * 109.46959 * 60.00150 * 16 14 13 18 18 C 1.52996 * 109.47543 * 60.00064 * 17 16 14 19 19 C 1.53002 * 109.46947 * 299.99571 * 18 17 16 20 20 C 1.53000 * 109.46974 * 205.00011 * 14 13 11 21 21 H 1.08998 * 109.47431 * 179.97438 * 20 14 13 22 22 C 1.53002 * 109.47269 * 59.99493 * 20 14 13 23 23 C 1.50695 * 109.47134 * 175.00133 * 22 20 14 24 24 C 1.38243 * 120.00269 * 269.72887 * 23 22 20 25 25 C 1.38233 * 120.00035 * 179.81271 * 24 23 22 26 26 C 1.38235 * 120.00072 * 0.41812 * 25 24 23 27 27 C 1.38234 * 119.99911 * 359.80970 * 26 25 24 28 28 C 1.38231 * 120.00265 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 31 31 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 32 32 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 33 33 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 34 34 H 0.96991 * 119.99641 * 0.02562 * 13 11 10 35 35 H 1.09007 * 109.46811 * 179.97438 * 16 14 13 36 36 H 1.08993 * 109.46998 * 299.99457 * 16 14 13 37 37 H 1.08998 * 109.47008 * 299.99428 * 17 16 14 38 38 H 1.09002 * 109.47087 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47122 * 180.02562 * 18 17 16 40 40 H 1.08998 * 109.47488 * 59.99657 * 18 17 16 41 41 H 1.08998 * 109.47621 * 300.00374 * 19 18 17 42 42 H 1.08996 * 109.47299 * 179.97438 * 19 18 17 43 43 H 1.09003 * 109.47373 * 295.00542 * 22 20 14 44 44 H 1.09004 * 109.46892 * 55.00329 * 22 20 14 45 45 H 1.08003 * 119.99628 * 359.97438 * 24 23 22 46 46 H 1.08003 * 119.99936 * 180.21400 * 25 24 23 47 47 H 1.08001 * 119.99732 * 179.79888 * 26 25 24 48 48 H 1.08001 * 119.99991 * 179.97438 * 27 26 25 49 49 H 1.08001 * 120.00341 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 -0.0003 15 1 0.5226 -7.2970 0.5896 16 6 1.0686 -7.7817 -1.4372 17 6 2.3467 -7.9308 -2.2650 18 6 3.2240 -9.0262 -1.6559 19 6 3.5885 -8.6476 -0.2190 20 6 2.3105 -8.4986 0.6089 21 1 1.7653 -9.4424 0.6094 22 6 2.6750 -8.1199 2.0458 23 6 3.4351 -9.2526 2.6863 24 6 2.7543 -10.2421 3.3708 25 6 3.4512 -11.2832 3.9550 26 6 4.8297 -11.3302 3.8622 27 6 5.5108 -10.3382 3.1818 28 6 4.8136 -9.2990 2.5947 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 0.8897 31 1 0.6240 -2.5568 -0.8903 32 1 2.8719 -3.6044 -0.8906 33 1 2.8719 -3.6044 0.8894 34 1 3.1355 -6.1344 -0.0006 35 1 0.5240 -8.7259 -1.4371 36 1 0.4436 -7.0013 -1.8711 37 1 2.8916 -6.9868 -2.2651 38 1 2.0871 -8.2009 -3.2886 39 1 4.1347 -9.1321 -2.2455 40 1 2.6790 -9.9702 -1.6558 41 1 4.1335 -7.7037 -0.2190 42 1 4.2132 -9.4282 0.2151 43 1 3.2955 -7.2238 2.0392 44 1 1.7642 -7.9271 2.6129 45 1 1.6776 -10.2031 3.4468 46 1 2.9191 -12.0580 4.4868 47 1 5.3744 -12.1418 4.3214 48 1 6.5878 -10.3747 3.1096 49 1 5.3458 -8.5238 2.0634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291625834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:05 Heat of formation + Delta-G solvation = -53.260590 kcal Electronic energy + Delta-G solvation = -26263.893797 eV Core-core repulsion = 22767.809097 eV Total energy + Delta-G solvation = -3496.084700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.44382 -39.26112 -37.83185 -33.91622 -33.47197 -33.32143 -31.18089 -31.04957 -30.30148 -29.61180 -26.32545 -25.48410 -23.11093 -22.57325 -22.26332 -21.72074 -20.76151 -19.82801 -18.91698 -17.04931 -16.89970 -15.91556 -15.74324 -15.54526 -15.26352 -15.05786 -14.92111 -14.41352 -14.11192 -14.02689 -13.66596 -13.49054 -13.29603 -13.11394 -12.74623 -12.45802 -12.30816 -12.09553 -12.05574 -11.95896 -11.69568 -11.28878 -11.20777 -11.12998 -10.98612 -10.89792 -10.66271 -10.59166 -10.40576 -10.05366 -9.91798 -9.62562 -9.14312 -9.12878 -8.95186 -8.90807 -8.62589 -8.29549 -5.94045 -3.98311 1.14085 1.17743 3.33159 3.35528 3.40021 3.41600 3.55476 3.64605 4.38863 4.49101 4.52907 4.63589 4.70227 4.74584 4.79851 4.90603 5.03048 5.13910 5.25526 5.27437 5.30342 5.32591 5.38705 5.40713 5.48388 5.52483 5.63995 5.68769 5.71821 5.83385 5.84478 5.88458 5.96268 6.06288 6.10612 6.18555 6.24758 6.26212 6.27231 6.28934 6.30518 6.34002 6.45890 6.79303 6.88231 6.93809 7.76460 7.89653 7.98063 8.09997 8.41580 8.86856 9.10565 9.64967 11.16862 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.002745 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.786161 B =10198.392596 C =11041.953761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.131 4.131 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.735 5.735 14 C 0.152 3.848 15 H 0.085 0.915 16 C -0.130 4.130 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.084 4.084 21 H 0.082 0.918 22 C -0.080 4.080 23 C -0.072 4.072 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.116 4.116 29 H 0.261 0.739 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.394 0.606 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 -25.699 2.994 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.390 5.390 14 C 0.046 3.954 15 H 0.103 0.897 16 C -0.169 4.169 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.103 4.103 21 H 0.100 0.900 22 C -0.117 4.117 23 C -0.072 4.072 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.326 -25.559 2.997 27.372 hybrid contribution 0.963 0.851 0.022 1.286 sum 10.289 -24.707 3.020 26.934 Atomic orbital electron populations 1.69989 1.06043 1.26653 1.50171 1.25026 0.94820 0.99189 0.95347 0.86662 0.79555 0.83238 0.78527 1.21296 1.20262 1.20274 1.21196 0.92863 0.91087 1.51407 0.92722 1.18874 0.93151 0.89352 0.98538 1.21856 1.00699 0.92248 1.02279 1.21506 0.88658 0.85682 0.74308 1.90661 1.14458 1.87642 1.48309 1.46298 1.09794 1.05310 1.77560 1.20830 0.95373 0.83138 0.96021 0.89685 1.21909 0.97667 1.01667 0.95646 1.21496 0.96415 0.99078 0.98595 1.21533 0.99511 0.98690 0.95789 1.21669 0.96996 1.01674 0.95111 1.21391 0.96761 0.98703 0.93483 0.90001 1.20697 1.00210 0.95824 0.94953 1.19937 0.93827 0.96270 0.97188 1.21093 0.99931 0.94466 0.98176 1.21135 0.94425 0.98385 0.99801 1.21120 0.94527 0.99064 1.00026 1.21146 0.99800 0.94772 0.98079 1.21096 0.93743 0.98665 0.99869 0.92919 0.95888 0.95899 0.90449 0.90444 0.77125 0.91635 0.91103 0.91658 0.92312 0.92184 0.92184 0.91984 0.91367 0.90480 0.90632 0.86139 0.86307 0.86423 0.86268 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 10 C -0.13 -2.65 5.64 -27.89 -0.16 -2.80 16 11 C 0.51 9.59 7.79 -10.98 -0.09 9.50 16 12 O -0.54 -12.42 15.64 5.56 0.09 -12.33 16 13 N -0.73 -9.84 3.62 -53.81 -0.19 -10.04 16 14 C 0.15 1.81 2.23 -67.93 -0.15 1.66 16 15 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 16 C -0.13 -1.52 5.60 -26.73 -0.15 -1.67 16 17 C -0.12 -1.19 5.76 -26.73 -0.15 -1.35 16 18 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 19 C -0.12 -0.96 4.60 -26.73 -0.12 -1.08 16 20 C -0.08 -0.77 1.97 -90.61 -0.18 -0.95 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 C -0.08 -0.75 4.61 -27.88 -0.13 -0.87 16 23 C -0.07 -0.66 4.71 -104.62 -0.49 -1.15 16 24 C -0.12 -1.05 9.70 -39.58 -0.38 -1.44 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 27 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 28 C -0.12 -1.00 7.97 -39.58 -0.32 -1.31 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 31 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.39 4.33 6.67 -40.82 -0.27 4.06 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 42 H 0.07 0.54 6.27 -51.93 -0.33 0.22 16 43 H 0.08 0.75 7.55 -51.93 -0.39 0.35 16 44 H 0.08 0.76 8.08 -51.93 -0.42 0.35 16 45 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 46 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.91 8.04 -52.49 -0.42 0.49 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -33.52 386.80 -11.18 -44.70 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.41 Total: 1.54 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -4.20 Total: -19.59 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.54 Total: -36.92 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.52 -11.18 -44.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291625834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.562 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds