Wall clock time and date at job start Tue Mar 31 2020 11:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99893 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47431 * 324.99393 * 14 13 11 16 16 C 1.52998 * 109.47232 * 84.99861 * 14 13 11 17 17 C 1.52997 * 109.46959 * 60.00150 * 16 14 13 18 18 C 1.52996 * 109.47543 * 60.00064 * 17 16 14 19 19 C 1.53002 * 109.46947 * 299.99571 * 18 17 16 20 20 C 1.53000 * 109.46974 * 205.00011 * 14 13 11 21 21 H 1.08998 * 109.47431 * 179.97438 * 20 14 13 22 22 C 1.53002 * 109.47269 * 59.99493 * 20 14 13 23 23 C 1.50695 * 109.47134 * 175.00133 * 22 20 14 24 24 C 1.38243 * 120.00269 * 269.72887 * 23 22 20 25 25 C 1.38233 * 120.00035 * 179.81271 * 24 23 22 26 26 C 1.38235 * 120.00072 * 0.41812 * 25 24 23 27 27 C 1.38234 * 119.99911 * 359.80970 * 26 25 24 28 28 C 1.38231 * 120.00265 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 31 31 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 32 32 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 33 33 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 34 34 H 0.96991 * 119.99641 * 0.02562 * 13 11 10 35 35 H 1.09007 * 109.46811 * 179.97438 * 16 14 13 36 36 H 1.08993 * 109.46998 * 299.99457 * 16 14 13 37 37 H 1.08998 * 109.47008 * 299.99428 * 17 16 14 38 38 H 1.09002 * 109.47087 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47122 * 180.02562 * 18 17 16 40 40 H 1.08998 * 109.47488 * 59.99657 * 18 17 16 41 41 H 1.08998 * 109.47621 * 300.00374 * 19 18 17 42 42 H 1.08996 * 109.47299 * 179.97438 * 19 18 17 43 43 H 1.09003 * 109.47373 * 295.00542 * 22 20 14 44 44 H 1.09004 * 109.46892 * 55.00329 * 22 20 14 45 45 H 1.08003 * 119.99628 * 359.97438 * 24 23 22 46 46 H 1.08003 * 119.99936 * 180.21400 * 25 24 23 47 47 H 1.08001 * 119.99732 * 179.79888 * 26 25 24 48 48 H 1.08001 * 119.99991 * 179.97438 * 27 26 25 49 49 H 1.08001 * 120.00341 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 -0.0003 15 1 0.5226 -7.2970 0.5896 16 6 1.0686 -7.7817 -1.4372 17 6 2.3467 -7.9308 -2.2650 18 6 3.2240 -9.0262 -1.6559 19 6 3.5885 -8.6476 -0.2190 20 6 2.3105 -8.4986 0.6089 21 1 1.7653 -9.4424 0.6094 22 6 2.6750 -8.1199 2.0458 23 6 3.4351 -9.2526 2.6863 24 6 2.7543 -10.2421 3.3708 25 6 3.4512 -11.2832 3.9550 26 6 4.8297 -11.3302 3.8622 27 6 5.5108 -10.3382 3.1818 28 6 4.8136 -9.2990 2.5947 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 0.8897 31 1 0.6240 -2.5568 -0.8903 32 1 2.8719 -3.6044 -0.8906 33 1 2.8719 -3.6044 0.8894 34 1 3.1355 -6.1344 -0.0006 35 1 0.5240 -8.7259 -1.4371 36 1 0.4436 -7.0013 -1.8711 37 1 2.8916 -6.9868 -2.2651 38 1 2.0871 -8.2009 -3.2886 39 1 4.1347 -9.1321 -2.2455 40 1 2.6790 -9.9702 -1.6558 41 1 4.1335 -7.7037 -0.2190 42 1 4.2132 -9.4282 0.2151 43 1 3.2955 -7.2238 2.0392 44 1 1.7642 -7.9271 2.6129 45 1 1.6776 -10.2031 3.4468 46 1 2.9191 -12.0580 4.4868 47 1 5.3744 -12.1418 4.3214 48 1 6.5878 -10.3747 3.1096 49 1 5.3458 -8.5238 2.0634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291625834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:04 Heat of formation + Delta-G solvation = -70.956233 kcal Electronic energy + Delta-G solvation = -26264.661137 eV Core-core repulsion = 22767.809097 eV Total energy + Delta-G solvation = -3496.852040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.47747 -40.16021 -38.99575 -35.55969 -34.64855 -34.59978 -32.99477 -31.74783 -31.03716 -30.72818 -27.74677 -26.82037 -24.17459 -23.62096 -23.07981 -22.88217 -21.60029 -21.23290 -19.96658 -18.84441 -17.66815 -17.50201 -16.85799 -16.60390 -16.38655 -16.14993 -16.03316 -15.86909 -15.20229 -15.00100 -14.64965 -14.31583 -14.23014 -14.15260 -14.07487 -13.81277 -13.55453 -13.22283 -13.11610 -13.01355 -12.77770 -12.77413 -12.55499 -12.49178 -11.96316 -11.89986 -11.85686 -11.71508 -11.62336 -11.41527 -11.31248 -11.23692 -10.90153 -10.64000 -10.55722 -9.95704 -9.73249 -9.48369 -8.17516 -6.31645 0.51938 0.57010 1.41711 1.46377 1.54050 1.79137 2.31729 2.46751 2.93536 3.15211 3.57349 3.78712 3.82096 4.03637 4.05266 4.11966 4.22431 4.24942 4.31217 4.38912 4.46935 4.50997 4.53112 4.56549 4.57932 4.63056 4.68793 4.72885 4.75218 4.89271 5.01448 5.05798 5.08281 5.16999 5.19325 5.22255 5.29260 5.32323 5.35025 5.44058 5.49458 5.52939 5.64646 5.65295 5.67975 5.70074 5.81423 5.86517 6.18545 6.19972 6.68488 6.87009 7.38224 7.43664 8.94964 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.002745 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.786161 B =10198.392596 C =11041.953761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.044 3.956 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.589 6.589 13 N -0.707 5.707 14 C 0.151 3.849 15 H 0.058 0.942 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.071 4.071 21 H 0.090 0.910 22 C -0.076 4.076 23 C -0.082 4.082 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.123 4.123 29 H 0.263 0.737 30 H -0.019 1.019 31 H -0.020 1.020 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.411 0.589 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.123 0.877 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.944 -26.975 3.058 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.007 3.993 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.469 6.469 13 N -0.361 5.361 14 C 0.046 3.954 15 H 0.077 0.923 16 C -0.167 4.167 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.090 4.090 21 H 0.108 0.892 22 C -0.113 4.113 23 C -0.082 4.082 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.141 4.141 29 H 0.071 0.929 30 H -0.001 1.001 31 H -0.001 1.001 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.141 0.859 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.944 -26.885 3.061 29.996 hybrid contribution -0.179 1.157 0.028 1.171 sum 12.765 -25.728 3.089 28.887 Atomic orbital electron populations 1.70178 1.08326 1.27839 1.51465 1.26150 0.95724 1.03965 0.94658 0.85379 0.78063 0.77343 0.79494 1.21356 1.18654 1.18669 1.21696 0.93968 0.91663 1.50809 0.90643 1.18656 0.93663 0.92481 0.94532 1.21629 0.99309 0.90504 1.04575 1.21241 0.87799 0.86753 0.74133 1.90649 1.16679 1.88361 1.51204 1.45983 1.10551 1.04427 1.75133 1.20939 0.95031 0.83059 0.96363 0.92343 1.21873 0.98433 1.01169 0.95235 1.21479 0.95539 0.99524 0.98745 1.21501 0.99703 0.98026 0.95692 1.21658 0.96209 1.02342 0.94809 1.21281 0.96887 0.97426 0.93363 0.89207 1.20621 0.99657 0.96147 0.94891 1.19904 0.94228 0.96196 0.97886 1.21258 1.00327 0.94937 0.98638 1.21388 0.94907 0.98539 0.99725 1.21433 0.94578 0.99568 0.99715 1.21433 1.00870 0.94472 0.97642 1.21269 0.93496 0.99221 1.00120 0.92881 1.00073 1.00139 0.88059 0.87977 0.75124 0.89998 0.94723 0.92573 0.91770 0.90747 0.91470 0.91505 0.90286 0.90692 0.92048 0.85941 0.84816 0.84537 0.84443 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.26 13.29 21.45 0.28 -59.98 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.51 4.26 29.85 0.13 2.63 16 10 C -0.12 -4.88 5.64 29.85 0.17 -4.71 16 11 C 0.51 19.83 7.79 87.65 0.68 20.51 16 12 O -0.59 -29.15 15.64 -3.04 -0.05 -29.19 16 13 N -0.71 -18.73 3.62 -442.53 -1.60 -20.33 16 14 C 0.15 3.62 2.23 44.99 0.10 3.72 16 15 H 0.06 1.75 7.58 -2.39 -0.02 1.74 16 16 C -0.13 -3.01 5.60 30.59 0.17 -2.84 16 17 C -0.12 -2.15 5.76 30.59 0.18 -1.97 16 18 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 19 C -0.11 -1.53 4.60 30.60 0.14 -1.38 16 20 C -0.07 -1.19 1.97 -10.79 -0.02 -1.21 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 C -0.08 -1.35 4.61 29.85 0.14 -1.22 16 23 C -0.08 -1.38 4.71 -19.86 -0.09 -1.47 16 24 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 25 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 26 C -0.14 -1.80 10.05 22.27 0.22 -1.58 16 27 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 28 C -0.12 -1.83 7.97 22.27 0.18 -1.66 16 29 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 30 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 31 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 32 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.41 8.27 6.67 -92.71 -0.62 7.65 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.86 6.51 -2.39 -0.02 0.84 16 42 H 0.08 0.99 6.27 -2.39 -0.01 0.97 16 43 H 0.07 1.35 7.55 -2.39 -0.02 1.33 16 44 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 45 H 0.12 1.87 8.06 -2.91 -0.02 1.85 16 46 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 48 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 49 H 0.13 1.61 8.04 -2.91 -0.02 1.59 16 Total: -1.00 -76.86 386.80 4.49 -72.37 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.29 Total: 19.12 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.53 Total: -28.66 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.32 Total: -80.31 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.05 Total: -29.19 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.86 4.49 -72.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291625834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.416 kcal (2) G-P(sol) polarization free energy of solvation -76.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds