Wall clock time and date at job start Tue Mar 31 2020 10:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 C 1.52997 * 109.47405 * 119.99647 * 2 1 3 5 5 C 1.53005 * 109.46983 * 65.00052 * 4 2 1 6 6 N 1.46901 * 109.47094 * 179.97438 * 5 4 2 7 7 C 1.46900 * 110.99472 * 66.04924 * 6 5 4 8 8 C 1.50712 * 109.46898 * 190.97154 * 7 6 5 9 9 H 1.08003 * 119.99726 * 5.12240 * 8 7 6 10 10 C 1.37875 * 120.00098 * 185.12859 * 8 7 6 11 11 N 1.31513 * 119.99933 * 5.07219 * 10 8 7 12 12 Si 1.86793 * 119.99915 * 185.07044 * 10 8 7 13 13 H 1.48499 * 109.46928 * 65.00121 * 12 10 8 14 14 H 1.48505 * 109.47143 * 184.99740 * 12 10 8 15 15 H 1.48499 * 109.47236 * 304.99967 * 12 10 8 16 16 C 1.46897 * 110.99905 * 189.99919 * 6 5 4 17 17 C 1.50700 * 109.46712 * 76.21141 * 16 6 5 18 18 C 1.39870 * 126.04308 * 264.37323 * 17 16 6 19 19 N 1.30833 * 108.20559 * 180.02562 * 18 17 16 20 20 N 1.40087 * 108.20318 * 0.02562 * 19 18 17 21 21 C 1.46507 * 126.03691 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.46598 * 304.22779 * 21 20 19 23 23 F 1.39899 * 109.46652 * 175.00106 * 22 21 20 24 24 F 1.39900 * 109.47350 * 295.00421 * 22 21 20 25 25 C 1.34943 * 107.92872 * 359.97438 * 20 19 18 26 26 H 1.08998 * 109.47131 * 60.00271 * 1 2 3 27 27 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46813 * 300.00105 * 1 2 3 29 29 H 1.08995 * 109.47028 * 240.00304 * 2 1 3 30 30 H 1.09001 * 109.46871 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46825 * 300.00179 * 3 2 1 32 32 H 1.09002 * 109.47392 * 59.99739 * 3 2 1 33 33 H 1.09001 * 109.47348 * 305.00069 * 4 2 1 34 34 H 1.09000 * 109.47203 * 184.99835 * 4 2 1 35 35 H 1.08996 * 109.46604 * 59.99863 * 5 4 2 36 36 H 1.09000 * 109.46974 * 299.99923 * 5 4 2 37 37 H 1.08997 * 109.47413 * 310.96786 * 7 6 5 38 38 H 1.08996 * 109.47436 * 70.97308 * 7 6 5 39 39 H 0.97001 * 120.00218 * 179.97438 * 11 10 8 40 40 H 1.09004 * 109.47212 * 316.21358 * 16 6 5 41 41 H 1.08996 * 109.46997 * 196.21271 * 16 6 5 42 42 H 1.07998 * 125.89648 * 359.97438 * 18 17 16 43 43 H 1.08995 * 109.47412 * 64.22776 * 21 20 19 44 44 H 1.08999 * 109.46825 * 184.23514 * 21 20 19 45 45 H 1.09003 * 109.46835 * 55.00707 * 22 21 20 46 46 H 1.07997 * 126.13149 * 180.26680 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 1.6354 -2.1954 1.1880 6 7 2.1256 -2.8880 2.3872 7 6 1.4524 -2.3906 3.5944 8 6 2.1585 -2.9184 4.8168 9 1 3.0684 -3.4904 4.7100 10 6 1.6428 -2.6712 6.0714 11 7 0.4842 -2.0619 6.1977 12 14 2.5898 -3.2017 7.5916 13 1 3.8619 -2.4399 7.6732 14 1 1.7732 -2.9326 8.8024 15 1 2.8871 -4.6542 7.5077 16 6 1.9664 -4.3425 2.2571 17 6 3.0332 -4.8846 1.3411 18 6 2.8949 -5.1295 -0.0291 19 7 4.0318 -5.5961 -0.4778 20 7 4.9309 -5.6635 0.5945 21 6 6.3179 -6.1305 0.5282 22 6 6.3525 -7.5446 -0.0551 23 9 7.6817 -7.9467 -0.2247 24 9 5.7066 -8.4256 0.8189 25 6 4.2941 -5.2213 1.6989 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6055 -0.2616 2.1370 34 1 3.1264 -0.6442 1.2951 35 1 2.0700 -2.6548 0.3003 36 1 0.5490 -2.2723 1.1422 37 1 1.4783 -1.3010 3.6021 38 1 0.4165 -2.7295 3.5986 39 1 0.1212 -1.8883 7.0803 40 1 0.9835 -4.5647 1.8416 41 1 2.0596 -4.8074 3.2385 42 1 2.0032 -4.9630 -0.6152 43 1 6.8968 -5.4609 -0.1078 44 1 6.7462 -6.1404 1.5304 45 1 5.8448 -7.5522 -1.0197 46 1 4.7163 -5.1454 2.6900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295221362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:06 Heat of formation + Delta-G solvation = -38.251748 kcal Electronic energy + Delta-G solvation = -26660.539058 eV Core-core repulsion = 22643.168412 eV Total energy + Delta-G solvation = -4017.370646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.182 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.26845 -47.27244 -41.03288 -37.50112 -35.41329 -33.96595 -32.50350 -30.61964 -29.32006 -28.61069 -26.94897 -26.55516 -24.41967 -23.71742 -22.72970 -20.89328 -20.54427 -19.62566 -19.27498 -18.00333 -17.69631 -16.90958 -16.41199 -16.07790 -15.02440 -14.96644 -14.75434 -14.48032 -14.19072 -14.01405 -13.89973 -13.63737 -13.54750 -13.48608 -13.01190 -12.95253 -12.64350 -12.52901 -12.15729 -11.97182 -11.90209 -11.67417 -11.39679 -11.30047 -11.18608 -10.96140 -10.66649 -10.65715 -10.36614 -10.28342 -10.11396 -9.99718 -9.64453 -9.29928 -9.17812 -8.42753 -8.14202 -7.14211 -6.01811 -4.02268 1.98171 2.33765 3.05193 3.32345 3.34591 3.37478 3.39244 3.91188 4.14328 4.42435 4.42956 4.74190 4.93688 4.98978 5.14761 5.17323 5.19964 5.24297 5.33193 5.42802 5.71337 5.76428 5.80042 5.83315 5.96889 6.00526 6.06651 6.09212 6.12846 6.25268 6.35533 6.44178 6.48112 6.58010 6.61050 6.79262 6.87883 6.88937 7.10304 7.34789 7.43810 7.79045 7.84169 8.16033 8.26418 8.60858 9.05651 9.61464 11.08594 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.008291 B = 0.004204 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.147147 B = 6658.816985 C = 9314.391496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.109 4.109 5 C 0.059 3.941 6 N -0.533 5.533 7 C 0.190 3.810 8 C -0.506 4.506 9 H 0.061 0.939 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.134 3.866 17 C -0.203 4.203 18 C 0.062 3.938 19 N -0.312 5.312 20 N -0.388 5.388 21 C 0.096 3.904 22 C 0.253 3.747 23 F -0.200 7.200 24 F -0.198 7.198 25 C 0.080 3.920 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.031 0.969 38 H -0.006 1.006 39 H 0.261 0.739 40 H 0.028 0.972 41 H 0.092 0.908 42 H 0.179 0.821 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 -4.021 -14.102 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.147 4.147 5 C -0.069 4.069 6 N -0.258 5.258 7 C 0.065 3.935 8 C -0.545 4.545 9 H 0.079 0.921 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.202 1.202 16 C 0.005 3.995 17 C -0.214 4.214 18 C -0.125 4.125 19 N -0.133 5.133 20 N -0.172 5.172 21 C -0.028 4.028 22 C 0.199 3.801 23 F -0.182 7.182 24 F -0.180 7.180 25 C -0.064 4.064 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.110 0.890 42 H 0.196 0.804 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.568 -4.346 -14.895 17.724 hybrid contribution -0.739 -0.137 1.636 1.801 sum 7.828 -4.483 -13.259 16.037 Atomic orbital electron populations 1.21884 0.95633 1.01818 1.01149 1.21093 0.95653 0.95871 0.98781 1.21822 1.00754 0.96383 1.01259 1.21634 1.01068 0.94978 0.97012 1.22044 0.96564 0.94245 0.94049 1.62075 1.58550 1.02279 1.02853 1.19776 0.92264 0.95824 0.85597 1.21117 1.09310 1.33880 0.90165 0.92067 1.24963 0.94819 0.95619 0.99040 1.69949 1.17508 1.42725 1.23514 0.86639 0.79917 0.78976 0.82325 1.20361 1.21453 1.20245 1.20256 0.92081 0.89354 0.97854 1.20287 0.96498 1.10091 0.94510 1.23794 0.96155 0.97869 0.94711 1.77173 1.00440 1.25464 1.10227 1.48049 1.09787 1.52483 1.06889 1.22495 0.80852 0.93668 1.05808 1.22184 0.76305 0.86893 0.94761 1.93002 1.37125 1.91788 1.96244 1.93028 1.81348 1.71388 1.72191 1.22382 0.93242 0.98400 0.92374 0.93528 0.92488 0.92626 0.91897 0.92947 0.93352 0.92671 0.91289 0.91886 0.92519 0.95988 0.95138 0.98792 0.92937 0.95383 0.88998 0.80444 0.86974 0.86421 0.86066 0.80697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.95 37.16 0.33 -1.58 16 2 C -0.09 -1.27 2.92 -90.62 -0.26 -1.53 16 3 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 4 C -0.11 -1.80 4.63 -26.73 -0.12 -1.92 16 5 C 0.06 1.03 4.54 -3.82 -0.02 1.01 16 6 N -0.53 -10.79 4.41 -237.51 -1.05 -11.83 16 7 C 0.19 4.70 4.60 -4.97 -0.02 4.68 16 8 C -0.51 -13.51 8.13 -34.43 -0.28 -13.79 16 9 H 0.06 1.60 7.58 -52.48 -0.40 1.20 16 10 C 0.06 1.56 5.45 -17.82 -0.10 1.46 16 11 N -0.90 -25.99 13.28 55.43 0.74 -25.25 16 12 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.13 2.47 5.32 -4.98 -0.03 2.44 16 17 C -0.20 -3.23 5.14 -105.05 -0.54 -3.77 16 18 C 0.06 0.88 11.04 -17.37 -0.19 0.69 16 19 N -0.31 -4.46 12.37 30.62 0.38 -4.08 16 20 N -0.39 -5.06 3.66 -61.36 -0.22 -5.29 16 21 C 0.10 0.88 6.70 -4.04 -0.03 0.85 16 22 C 0.25 2.41 5.43 37.16 0.20 2.61 16 23 F -0.20 -1.95 17.34 2.25 0.04 -1.91 16 24 F -0.20 -2.45 17.32 2.25 0.04 -2.41 16 25 C 0.08 1.17 11.36 -17.22 -0.20 0.98 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.75 6.56 -51.93 -0.34 0.41 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.29 6.35 -51.93 -0.33 0.96 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.91 6.69 -51.93 -0.35 0.56 16 36 H 0.02 0.39 6.54 -51.93 -0.34 0.05 16 37 H 0.03 0.80 6.06 -51.93 -0.31 0.49 16 38 H -0.01 -0.16 8.10 -51.93 -0.42 -0.58 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.03 0.50 7.99 -51.93 -0.42 0.09 16 41 H 0.09 1.88 6.75 -51.93 -0.35 1.53 16 42 H 0.18 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.12 0.89 8.07 -51.93 -0.42 0.47 16 45 H 0.12 1.06 8.07 -51.93 -0.42 0.64 16 46 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -30.25 380.96 -7.73 -37.98 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.46 Total: 0.30 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.91 Total: -9.26 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.16 Total: -46.45 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.08 Total: -4.33 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.25 -7.73 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295221362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.276 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds