Wall clock time and date at job start Tue Mar 31 2020 10:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 C 1.52997 * 109.47405 * 119.99647 * 2 1 3 5 5 C 1.53005 * 109.46983 * 65.00052 * 4 2 1 6 6 N 1.46901 * 109.47094 * 179.97438 * 5 4 2 7 7 C 1.46900 * 110.99472 * 66.04924 * 6 5 4 8 8 C 1.50712 * 109.46898 * 190.97154 * 7 6 5 9 9 H 1.08003 * 119.99726 * 5.12240 * 8 7 6 10 10 C 1.37875 * 120.00098 * 185.12859 * 8 7 6 11 11 N 1.31513 * 119.99933 * 5.07219 * 10 8 7 12 12 Si 1.86793 * 119.99915 * 185.07044 * 10 8 7 13 13 H 1.48499 * 109.46928 * 65.00121 * 12 10 8 14 14 H 1.48505 * 109.47143 * 184.99740 * 12 10 8 15 15 H 1.48499 * 109.47236 * 304.99967 * 12 10 8 16 16 C 1.46897 * 110.99905 * 189.99919 * 6 5 4 17 17 C 1.50700 * 109.46712 * 76.21141 * 16 6 5 18 18 C 1.39870 * 126.04308 * 264.37323 * 17 16 6 19 19 N 1.30833 * 108.20559 * 180.02562 * 18 17 16 20 20 N 1.40087 * 108.20318 * 0.02562 * 19 18 17 21 21 C 1.46507 * 126.03691 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.46598 * 304.22779 * 21 20 19 23 23 F 1.39899 * 109.46652 * 175.00106 * 22 21 20 24 24 F 1.39900 * 109.47350 * 295.00421 * 22 21 20 25 25 C 1.34943 * 107.92872 * 359.97438 * 20 19 18 26 26 H 1.08998 * 109.47131 * 60.00271 * 1 2 3 27 27 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46813 * 300.00105 * 1 2 3 29 29 H 1.08995 * 109.47028 * 240.00304 * 2 1 3 30 30 H 1.09001 * 109.46871 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46825 * 300.00179 * 3 2 1 32 32 H 1.09002 * 109.47392 * 59.99739 * 3 2 1 33 33 H 1.09001 * 109.47348 * 305.00069 * 4 2 1 34 34 H 1.09000 * 109.47203 * 184.99835 * 4 2 1 35 35 H 1.08996 * 109.46604 * 59.99863 * 5 4 2 36 36 H 1.09000 * 109.46974 * 299.99923 * 5 4 2 37 37 H 1.08997 * 109.47413 * 310.96786 * 7 6 5 38 38 H 1.08996 * 109.47436 * 70.97308 * 7 6 5 39 39 H 0.97001 * 120.00218 * 179.97438 * 11 10 8 40 40 H 1.09004 * 109.47212 * 316.21358 * 16 6 5 41 41 H 1.08996 * 109.46997 * 196.21271 * 16 6 5 42 42 H 1.07998 * 125.89648 * 359.97438 * 18 17 16 43 43 H 1.08995 * 109.47412 * 64.22776 * 21 20 19 44 44 H 1.08999 * 109.46825 * 184.23514 * 21 20 19 45 45 H 1.09003 * 109.46835 * 55.00707 * 22 21 20 46 46 H 1.07997 * 126.13149 * 180.26680 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 1.6354 -2.1954 1.1880 6 7 2.1256 -2.8880 2.3872 7 6 1.4524 -2.3906 3.5944 8 6 2.1585 -2.9184 4.8168 9 1 3.0684 -3.4904 4.7100 10 6 1.6428 -2.6712 6.0714 11 7 0.4842 -2.0619 6.1977 12 14 2.5898 -3.2017 7.5916 13 1 3.8619 -2.4399 7.6732 14 1 1.7732 -2.9326 8.8024 15 1 2.8871 -4.6542 7.5077 16 6 1.9664 -4.3425 2.2571 17 6 3.0332 -4.8846 1.3411 18 6 2.8949 -5.1295 -0.0291 19 7 4.0318 -5.5961 -0.4778 20 7 4.9309 -5.6635 0.5945 21 6 6.3179 -6.1305 0.5282 22 6 6.3525 -7.5446 -0.0551 23 9 7.6817 -7.9467 -0.2247 24 9 5.7066 -8.4256 0.8189 25 6 4.2941 -5.2213 1.6989 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6055 -0.2616 2.1370 34 1 3.1264 -0.6442 1.2951 35 1 2.0700 -2.6548 0.3003 36 1 0.5490 -2.2723 1.1422 37 1 1.4783 -1.3010 3.6021 38 1 0.4165 -2.7295 3.5986 39 1 0.1212 -1.8883 7.0803 40 1 0.9835 -4.5647 1.8416 41 1 2.0596 -4.8074 3.2385 42 1 2.0032 -4.9630 -0.6152 43 1 6.8968 -5.4609 -0.1078 44 1 6.7462 -6.1404 1.5304 45 1 5.8448 -7.5522 -1.0197 46 1 4.7163 -5.1454 2.6900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295221362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:05 Heat of formation + Delta-G solvation = -55.083665 kcal Electronic energy + Delta-G solvation = -26661.268944 eV Core-core repulsion = 22643.168412 eV Total energy + Delta-G solvation = -4018.100533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.182 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.07761 -48.09753 -42.14285 -38.96755 -36.71868 -35.05581 -34.43364 -31.85790 -30.37523 -30.18056 -28.17926 -27.98055 -25.83053 -24.66027 -24.43703 -22.15336 -21.68268 -20.85516 -20.63408 -18.85298 -18.52519 -18.46405 -17.81184 -17.02609 -16.75864 -16.18003 -16.08889 -15.85627 -15.42531 -15.16322 -14.99155 -14.82773 -14.56956 -14.46201 -14.19540 -14.10922 -13.99156 -13.80479 -13.56627 -13.30659 -13.08766 -13.00189 -12.84766 -12.71774 -12.47768 -12.39885 -12.21534 -12.13304 -11.81198 -11.50700 -11.46354 -11.43966 -11.18547 -11.10958 -10.52398 -10.35491 -9.34619 -8.83909 -8.13007 -6.21075 0.88718 1.39144 1.44230 1.46541 1.53826 1.85833 2.44919 2.56918 3.18478 3.19554 3.42908 3.51606 3.63345 3.84692 4.01544 4.05140 4.11204 4.18680 4.27753 4.34592 4.43548 4.51483 4.55111 4.73986 4.76874 4.81598 4.84604 4.89614 4.99366 5.04584 5.09324 5.20682 5.22558 5.30216 5.35972 5.38201 5.44448 5.54489 5.60383 5.71328 5.74578 6.01019 6.18056 6.48171 6.68268 6.79746 6.96512 7.47832 8.97342 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.008291 B = 0.004204 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.147147 B = 6658.816985 C = 9314.391496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.103 4.103 5 C 0.063 3.937 6 N -0.535 5.535 7 C 0.208 3.792 8 C -0.515 4.515 9 H 0.065 0.935 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.961 3.039 13 H -0.270 1.270 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.141 3.859 17 C -0.224 4.224 18 C 0.061 3.939 19 N -0.317 5.317 20 N -0.382 5.382 21 C 0.090 3.910 22 C 0.257 3.743 23 F -0.200 7.200 24 F -0.216 7.216 25 C 0.080 3.920 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.017 0.983 37 H 0.008 0.992 38 H -0.041 1.041 39 H 0.262 0.738 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.198 0.802 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.131 0.869 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -4.452 -15.516 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.200 4.200 4 C -0.141 4.141 5 C -0.065 4.065 6 N -0.259 5.259 7 C 0.082 3.918 8 C -0.553 4.553 9 H 0.083 0.917 10 C -0.194 4.194 11 N -0.576 5.576 12 Si 0.786 3.214 13 H -0.196 1.196 14 H -0.214 1.214 15 H -0.191 1.191 16 C 0.013 3.987 17 C -0.236 4.236 18 C -0.126 4.126 19 N -0.138 5.138 20 N -0.165 5.165 21 C -0.033 4.033 22 C 0.202 3.798 23 F -0.181 7.181 24 F -0.198 7.198 25 C -0.066 4.066 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.026 0.974 38 H -0.023 1.023 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.084 0.916 42 H 0.214 0.786 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.386 -4.797 -16.343 19.949 hybrid contribution -1.253 -0.034 2.015 2.373 sum 9.133 -4.830 -14.327 17.664 Atomic orbital electron populations 1.21871 0.95348 1.01575 1.01560 1.21061 0.95842 0.96498 0.97402 1.21805 1.00978 0.95430 1.01806 1.21564 1.00380 0.94578 0.97531 1.22091 0.96351 0.94662 0.93362 1.62057 1.57803 1.03665 1.02397 1.19398 0.90557 0.94329 0.87547 1.21441 1.09344 1.33499 0.91043 0.91702 1.25826 0.95605 0.95687 1.02298 1.70090 1.19177 1.44165 1.24182 0.85559 0.78530 0.79067 0.78210 1.19560 1.21413 1.19077 1.20072 0.93413 0.87959 0.97286 1.20034 0.96460 1.12053 0.95027 1.24037 0.96951 0.97534 0.94038 1.77146 1.00523 1.25400 1.10708 1.48261 1.10807 1.51443 1.05975 1.22837 0.79041 0.93737 1.07660 1.22259 0.76152 0.86534 0.94806 1.93004 1.37124 1.91780 1.96218 1.92997 1.81773 1.72126 1.72864 1.22525 0.93102 0.97766 0.93173 0.91119 0.93094 0.94185 0.90306 0.92618 0.91199 0.93736 0.94472 0.92567 0.90416 0.96478 0.97391 1.02291 0.92969 0.95291 0.91608 0.78551 0.84515 0.84639 0.85134 0.79893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.95 71.98 0.64 -3.02 16 2 C -0.09 -2.28 2.92 -10.79 -0.03 -2.31 16 3 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 4 C -0.10 -3.42 4.63 30.59 0.14 -3.28 16 5 C 0.06 2.20 4.54 86.30 0.39 2.59 16 6 N -0.54 -22.16 4.41 -905.35 -3.99 -26.15 16 7 C 0.21 10.77 4.60 85.56 0.39 11.16 16 8 C -0.51 -28.18 8.13 25.60 0.21 -27.97 16 9 H 0.06 3.43 7.58 -2.91 -0.02 3.41 16 10 C 0.00 0.20 5.45 84.65 0.46 0.66 16 11 N -0.94 -55.80 13.28 21.45 0.28 -55.51 16 12 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 14 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 16 C 0.14 5.31 5.32 85.56 0.46 5.77 16 17 C -0.22 -6.95 5.14 -20.14 -0.10 -7.05 16 18 C 0.06 1.64 11.04 85.24 0.94 2.58 16 19 N -0.32 -8.32 12.37 -57.03 -0.71 -9.02 16 20 N -0.38 -9.07 3.66 -348.04 -1.27 -10.35 16 21 C 0.09 1.39 6.70 86.38 0.58 1.97 16 22 C 0.26 4.30 5.43 71.98 0.39 4.69 16 23 F -0.20 -3.45 17.34 44.97 0.78 -2.67 16 24 F -0.22 -5.00 17.32 44.97 0.78 -4.22 16 25 C 0.08 2.23 11.36 83.54 0.95 3.18 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.32 6.56 -2.39 -0.02 1.30 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 1.46 6.35 -2.39 -0.02 1.45 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.40 6.69 -2.39 -0.02 2.38 16 36 H 0.02 0.62 6.54 -2.39 -0.02 0.60 16 37 H 0.01 0.45 6.06 -2.39 -0.01 0.44 16 38 H -0.04 -2.35 8.10 -2.39 -0.02 -2.37 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.03 1.06 7.99 -2.39 -0.02 1.04 16 41 H 0.07 2.78 6.75 -2.39 -0.02 2.77 16 42 H 0.20 4.31 8.06 -2.91 -0.02 4.28 16 43 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.14 1.64 8.07 -2.39 -0.02 1.63 16 45 H 0.13 1.97 8.07 -2.39 -0.02 1.95 16 46 H 0.18 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -66.28 380.96 4.94 -61.34 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.96 Total: 14.69 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 6.08 Total: -13.61 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -5.68 Total: -101.03 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.56 Total: -6.89 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.28 4.94 -61.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295221362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.256 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds