Wall clock time and date at job start Tue Mar 31 2020 11:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99804 * 2 1 4 4 C 1.50708 * 109.46882 * 270.00194 * 3 2 1 5 5 H 1.07994 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99702 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00238 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00040 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46879 * 89.99938 * 8 6 4 10 10 H 1.48499 * 109.47284 * 210.00019 * 8 6 4 11 11 H 1.48500 * 109.47338 * 330.00048 * 8 6 4 12 12 C 1.39672 * 120.00235 * 180.02562 * 2 1 3 13 13 C 1.38921 * 120.07315 * 359.97438 * 12 2 1 14 14 C 1.38109 * 119.92317 * 179.97438 * 13 12 2 15 15 C 1.38284 * 120.07218 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.91998 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46921 * 89.99972 * 16 15 14 18 18 C 1.46906 * 110.99793 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46978 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47309 * 180.02562 * 19 18 17 21 21 C 1.34428 * 126.82712 * 124.99685 * 20 19 18 22 22 N 1.30834 * 108.07702 * 179.97438 * 21 20 19 23 23 C 1.33244 * 109.83266 * 359.97438 * 22 21 20 24 24 N 1.30716 * 108.94177 * 359.75551 * 23 22 21 25 25 C 1.38278 * 120.15335 * 0.27098 * 15 14 13 26 26 C 1.38105 * 120.07448 * 359.45469 * 25 15 14 27 27 H 1.08999 * 109.46935 * 269.99692 * 1 2 3 28 28 H 1.08993 * 109.47432 * 30.00006 * 1 2 3 29 29 H 1.09008 * 109.46940 * 150.00354 * 1 2 3 30 30 H 1.08992 * 109.47368 * 29.99847 * 3 2 1 31 31 H 1.08995 * 109.47116 * 150.00763 * 3 2 1 32 32 H 0.97003 * 119.99951 * 180.02562 * 7 6 4 33 33 H 1.07996 * 120.03799 * 359.96012 * 13 12 2 34 34 H 1.07998 * 119.95621 * 179.97438 * 14 13 12 35 35 H 1.09002 * 109.47060 * 210.00153 * 16 15 14 36 36 H 1.09001 * 109.47380 * 330.00241 * 16 15 14 37 37 H 1.00899 * 111.00283 * 303.95218 * 17 16 15 38 38 H 1.08995 * 109.47087 * 299.99901 * 18 17 16 39 39 H 1.09002 * 109.46903 * 59.99922 * 18 17 16 40 40 H 1.09005 * 109.46860 * 299.99699 * 19 18 17 41 41 H 1.09002 * 109.47639 * 60.00040 * 19 18 17 42 42 H 1.07999 * 125.96297 * 0.02562 * 21 20 19 43 43 H 1.07990 * 125.53261 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.96559 * 179.70085 * 25 15 14 45 45 H 1.08000 * 120.03659 * 180.26635 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5550 3.6171 -0.6732 8 14 3.4387 3.4164 -3.4340 9 1 2.3089 4.2596 -3.9010 10 1 4.6992 4.1989 -3.4963 11 1 3.5557 2.2192 -4.3047 12 6 2.1634 -1.2096 -0.0005 13 6 1.4704 -2.4136 -0.0005 14 6 2.1642 -3.6078 -0.0016 15 6 3.5470 -3.6059 -0.0021 16 6 4.3005 -4.9110 -0.0027 17 7 4.5448 -5.3347 -1.3879 18 6 5.2796 -6.6062 -1.4277 19 6 5.5152 -7.0137 -2.8834 20 7 6.2474 -8.2819 -2.9232 21 6 5.8785 -9.4057 -3.5621 22 7 6.7996 -10.3115 -3.3550 23 6 7.7679 -9.8053 -2.5924 24 7 7.4777 -8.5632 -2.3068 25 6 4.2399 -2.4092 0.0040 26 6 3.5525 -1.2114 -0.0006 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5137 32 1 4.0318 4.4430 -0.8505 33 1 0.3905 -2.4157 0.0005 34 1 1.6259 -4.5441 -0.0012 35 1 5.2531 -4.7807 0.5108 36 1 3.7116 -5.6708 0.5111 37 1 3.6802 -5.4001 -1.9039 38 1 6.2389 -6.4872 -0.9243 39 1 4.6978 -7.3779 -0.9235 40 1 4.5559 -7.1325 -3.3873 41 1 6.0971 -6.2419 -3.3873 42 1 4.9792 -9.5375 -4.1454 43 1 8.6516 -10.3340 -2.2671 44 1 5.3199 -2.4113 0.0085 45 1 4.0944 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299345328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:03 Heat of formation + Delta-G solvation = 128.453798 kcal Electronic energy + Delta-G solvation = -24490.491687 eV Core-core repulsion = 20931.039122 eV Total energy + Delta-G solvation = -3559.452565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34853 -39.12492 -37.17415 -35.67677 -33.98492 -32.71187 -31.52270 -30.58701 -30.48181 -28.30678 -27.82448 -25.68516 -24.20448 -23.26724 -22.34051 -22.05709 -21.64312 -21.48197 -19.63071 -17.66872 -16.90241 -16.56196 -16.43134 -15.63610 -15.44714 -15.14013 -14.96532 -14.55562 -14.38026 -14.17989 -14.00537 -13.74687 -13.55909 -13.10327 -12.94515 -12.78525 -12.49534 -12.18797 -11.98725 -11.81068 -11.50019 -11.44146 -11.28039 -10.99220 -10.79633 -10.72218 -10.34460 -10.28998 -10.12324 -10.01245 -9.94101 -9.78840 -8.92594 -8.61041 -8.53142 -8.32158 -6.51532 -6.05016 -4.20030 1.30965 1.90809 2.05987 2.17982 2.65303 3.24463 3.31645 3.36008 3.89349 3.98915 4.10542 4.18505 4.38803 4.52704 4.55640 4.67456 4.81666 4.91149 5.16822 5.18883 5.20589 5.37068 5.49677 5.53561 5.54720 5.71315 5.78286 5.89710 5.98228 6.03684 6.10450 6.22883 6.34020 6.38916 6.44629 6.58266 6.72443 6.89823 6.97395 7.10423 7.20860 7.23909 7.33387 7.55032 7.75051 7.78323 8.12185 8.22274 8.43872 8.88718 9.46915 10.93143 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.002218 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.336005 B =12618.922408 C =13670.430680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.614 5.614 3 C 0.248 3.752 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.243 3.757 13 C -0.223 4.223 14 C -0.067 4.067 15 C -0.177 4.177 16 C 0.120 3.880 17 N -0.681 5.681 18 C 0.050 3.950 19 C 0.129 3.871 20 N -0.375 5.375 21 C 0.253 3.747 22 N -0.550 5.550 23 C 0.194 3.806 24 N -0.315 5.315 25 C -0.049 4.049 26 C -0.188 4.188 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.030 0.970 37 H 0.342 0.658 38 H 0.087 0.913 39 H 0.032 0.968 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.218 0.782 43 H 0.216 0.784 44 H 0.112 0.888 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -21.944 -1.537 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.136 3.864 13 C -0.246 4.246 14 C -0.087 4.087 15 C -0.180 4.180 16 C -0.008 4.008 17 N -0.313 5.313 18 C -0.081 4.081 19 C 0.007 3.993 20 N -0.166 5.166 21 C -0.044 4.044 22 N -0.278 5.278 23 C -0.109 4.109 24 N -0.143 5.143 25 C -0.069 4.069 26 C -0.211 4.211 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.160 0.840 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.235 0.765 43 H 0.233 0.767 44 H 0.130 0.870 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.225 -20.935 -1.237 21.007 hybrid contribution -0.796 -0.041 -0.907 1.207 sum 0.429 -20.976 -2.143 21.090 Atomic orbital electron populations 1.21480 0.81492 1.01942 0.99709 1.47123 1.04402 1.04654 1.75785 1.19303 0.92104 0.78714 0.97050 1.21561 1.36444 1.06419 0.92592 0.92256 1.24968 0.95388 0.96316 0.97442 1.69929 1.38294 1.14353 1.30773 0.86516 0.77703 0.78706 0.84671 1.20648 1.21068 1.19762 1.17979 0.91549 0.85992 0.90910 1.20519 0.98966 0.91372 1.13712 1.20494 0.93254 0.96502 0.98402 1.19115 0.93066 0.93705 1.12072 1.20629 0.98965 0.93533 0.87691 1.60468 1.26997 1.28585 1.15247 1.22129 1.00462 0.90984 0.94476 1.21827 0.96169 0.81997 0.99335 1.50559 1.16065 1.12293 1.37711 1.26099 0.99839 0.82350 0.96155 1.70544 1.04045 1.32028 1.21149 1.26037 0.99269 0.89902 0.95649 1.78087 0.97656 1.17766 1.20763 1.20649 0.98792 0.91299 0.96121 1.20910 0.92654 0.98868 1.08622 0.94589 0.91409 0.92695 0.95181 0.94570 0.92624 0.86916 0.87765 0.90754 0.95205 0.83954 0.89502 0.95005 0.88054 0.87991 0.76539 0.76727 0.86965 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.19 59.85 0.61 2.28 16 2 N -0.61 -12.86 2.99 -181.00 -0.54 -13.40 16 3 C 0.25 6.13 4.91 -5.19 -0.03 6.10 16 4 C -0.53 -14.31 9.39 -34.44 -0.32 -14.63 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 C 0.24 4.78 6.55 -83.79 -0.55 4.23 16 13 C -0.22 -3.69 9.21 -39.38 -0.36 -4.05 16 14 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 15 C -0.18 -2.55 5.39 -104.59 -0.56 -3.12 16 16 C 0.12 1.37 5.81 -4.97 -0.03 1.34 16 17 N -0.68 -6.87 6.49 -115.05 -0.75 -7.62 16 18 C 0.05 0.43 5.90 -3.82 -0.02 0.40 16 19 C 0.13 0.90 6.81 -4.04 -0.03 0.87 16 20 N -0.38 -3.26 3.69 -62.63 -0.23 -3.49 16 21 C 0.25 1.91 12.63 -90.65 -1.14 0.76 16 22 N -0.55 -5.43 11.19 -15.83 -0.18 -5.61 16 23 C 0.19 1.83 13.03 -91.81 -1.20 0.63 16 24 N -0.31 -3.40 12.58 29.29 0.37 -3.03 16 25 C -0.05 -0.82 9.69 -39.62 -0.38 -1.20 16 26 C -0.19 -3.71 9.21 -39.38 -0.36 -4.08 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.05 0.82 6.20 -51.92 -0.32 0.50 16 30 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.04 0.95 6.20 -51.93 -0.32 0.62 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 33 H 0.11 1.68 6.14 -52.49 -0.32 1.36 16 34 H 0.10 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.34 3.12 8.72 -39.29 -0.34 2.77 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.22 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.22 1.27 8.06 -52.49 -0.42 0.84 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 45 H 0.13 2.90 6.14 -52.49 -0.32 2.57 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -31.94 379.67 -11.41 -43.35 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.66 Total: 2.88 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -4.86 Total: -10.23 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.59 Total: -57.83 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.94 -11.41 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299345328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.806 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds