Wall clock time and date at job start Tue Mar 31 2020 11:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99804 * 2 1 4 4 C 1.50708 * 109.46882 * 270.00194 * 3 2 1 5 5 H 1.07994 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99702 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00238 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00040 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46879 * 89.99938 * 8 6 4 10 10 H 1.48499 * 109.47284 * 210.00019 * 8 6 4 11 11 H 1.48500 * 109.47338 * 330.00048 * 8 6 4 12 12 C 1.39672 * 120.00235 * 180.02562 * 2 1 3 13 13 C 1.38921 * 120.07315 * 359.97438 * 12 2 1 14 14 C 1.38109 * 119.92317 * 179.97438 * 13 12 2 15 15 C 1.38284 * 120.07218 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.91998 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46921 * 89.99972 * 16 15 14 18 18 C 1.46906 * 110.99793 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46978 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47309 * 180.02562 * 19 18 17 21 21 C 1.34428 * 126.82712 * 124.99685 * 20 19 18 22 22 N 1.30834 * 108.07702 * 179.97438 * 21 20 19 23 23 C 1.33244 * 109.83266 * 359.97438 * 22 21 20 24 24 N 1.30716 * 108.94177 * 359.75551 * 23 22 21 25 25 C 1.38278 * 120.15335 * 0.27098 * 15 14 13 26 26 C 1.38105 * 120.07448 * 359.45469 * 25 15 14 27 27 H 1.08999 * 109.46935 * 269.99692 * 1 2 3 28 28 H 1.08993 * 109.47432 * 30.00006 * 1 2 3 29 29 H 1.09008 * 109.46940 * 150.00354 * 1 2 3 30 30 H 1.08992 * 109.47368 * 29.99847 * 3 2 1 31 31 H 1.08995 * 109.47116 * 150.00763 * 3 2 1 32 32 H 0.97003 * 119.99951 * 180.02562 * 7 6 4 33 33 H 1.07996 * 120.03799 * 359.96012 * 13 12 2 34 34 H 1.07998 * 119.95621 * 179.97438 * 14 13 12 35 35 H 1.09002 * 109.47060 * 210.00153 * 16 15 14 36 36 H 1.09001 * 109.47380 * 330.00241 * 16 15 14 37 37 H 1.00899 * 111.00283 * 303.95218 * 17 16 15 38 38 H 1.08995 * 109.47087 * 299.99901 * 18 17 16 39 39 H 1.09002 * 109.46903 * 59.99922 * 18 17 16 40 40 H 1.09005 * 109.46860 * 299.99699 * 19 18 17 41 41 H 1.09002 * 109.47639 * 60.00040 * 19 18 17 42 42 H 1.07999 * 125.96297 * 0.02562 * 21 20 19 43 43 H 1.07990 * 125.53261 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.96559 * 179.70085 * 25 15 14 45 45 H 1.08000 * 120.03659 * 180.26635 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5550 3.6171 -0.6732 8 14 3.4387 3.4164 -3.4340 9 1 2.3089 4.2596 -3.9010 10 1 4.6992 4.1989 -3.4963 11 1 3.5557 2.2192 -4.3047 12 6 2.1634 -1.2096 -0.0005 13 6 1.4704 -2.4136 -0.0005 14 6 2.1642 -3.6078 -0.0016 15 6 3.5470 -3.6059 -0.0021 16 6 4.3005 -4.9110 -0.0027 17 7 4.5448 -5.3347 -1.3879 18 6 5.2796 -6.6062 -1.4277 19 6 5.5152 -7.0137 -2.8834 20 7 6.2474 -8.2819 -2.9232 21 6 5.8785 -9.4057 -3.5621 22 7 6.7996 -10.3115 -3.3550 23 6 7.7679 -9.8053 -2.5924 24 7 7.4777 -8.5632 -2.3068 25 6 4.2399 -2.4092 0.0040 26 6 3.5525 -1.2114 -0.0006 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5137 32 1 4.0318 4.4430 -0.8505 33 1 0.3905 -2.4157 0.0005 34 1 1.6259 -4.5441 -0.0012 35 1 5.2531 -4.7807 0.5108 36 1 3.7116 -5.6708 0.5111 37 1 3.6802 -5.4001 -1.9039 38 1 6.2389 -6.4872 -0.9243 39 1 4.6978 -7.3779 -0.9235 40 1 4.5559 -7.1325 -3.3873 41 1 6.0971 -6.2419 -3.3873 42 1 4.9792 -9.5375 -4.1454 43 1 8.6516 -10.3340 -2.2671 44 1 5.3199 -2.4113 0.0085 45 1 4.0944 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299345328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:02 Heat of formation + Delta-G solvation = 110.411283 kcal Electronic energy + Delta-G solvation = -24491.274069 eV Core-core repulsion = 20931.039122 eV Total energy + Delta-G solvation = -3560.234947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.96191 -40.46020 -38.17600 -36.90367 -34.99076 -34.51501 -32.17053 -31.87753 -31.67057 -29.68225 -29.14971 -26.98457 -25.65017 -24.19825 -23.44165 -22.99943 -22.85036 -22.18453 -21.00885 -18.63537 -18.32003 -18.07062 -17.39839 -16.90051 -16.41933 -16.12948 -15.94553 -15.89572 -15.35918 -15.30219 -15.15476 -14.79366 -14.63149 -14.37780 -14.27828 -13.99561 -13.71319 -13.21298 -13.20310 -13.13487 -13.04177 -12.77159 -12.66082 -12.53335 -12.24159 -12.15400 -11.91567 -11.73852 -11.40337 -11.00602 -10.79896 -10.64873 -10.63650 -10.42057 -9.66009 -9.40141 -8.36194 -7.80182 -6.37353 0.70929 0.72348 0.83118 1.36661 1.38259 1.40582 1.49150 2.02611 2.34334 2.64006 2.99895 3.06332 3.39061 3.54806 3.63742 3.95275 4.06142 4.07881 4.15850 4.23365 4.25282 4.36896 4.44026 4.46315 4.66138 4.72014 4.73443 4.79970 4.86367 4.88421 4.91376 5.02761 5.12856 5.21243 5.28906 5.33691 5.48665 5.59781 5.65915 5.70625 5.89072 5.92928 6.00381 6.07088 6.22561 6.47768 6.50415 6.82921 6.94644 7.13556 7.34473 8.83212 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.002218 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.336005 B =12618.922408 C =13670.430680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.631 5.631 3 C 0.265 3.735 4 C -0.539 4.539 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.271 1.271 12 C 0.213 3.787 13 C -0.216 4.216 14 C -0.057 4.057 15 C -0.160 4.160 16 C 0.125 3.875 17 N -0.689 5.689 18 C 0.061 3.939 19 C 0.131 3.869 20 N -0.381 5.381 21 C 0.261 3.739 22 N -0.581 5.581 23 C 0.190 3.810 24 N -0.355 5.355 25 C -0.056 4.056 26 C -0.218 4.218 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.267 0.733 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.352 0.648 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.139 0.861 41 H 0.091 0.909 42 H 0.261 0.739 43 H 0.237 0.763 44 H 0.118 0.882 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -24.880 -2.965 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.339 5.339 3 C 0.143 3.857 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.196 1.196 12 C 0.108 3.892 13 C -0.239 4.239 14 C -0.076 4.076 15 C -0.163 4.163 16 C -0.004 4.004 17 N -0.322 5.322 18 C -0.069 4.069 19 C 0.010 3.990 20 N -0.172 5.172 21 C -0.035 4.035 22 N -0.309 5.309 23 C -0.113 4.113 24 N -0.183 5.183 25 C -0.075 4.075 26 C -0.241 4.241 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.171 0.829 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.157 0.843 41 H 0.110 0.890 42 H 0.277 0.723 43 H 0.253 0.747 44 H 0.136 0.864 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.269 -23.905 -2.664 24.055 hybrid contribution -0.304 0.716 -0.431 0.889 sum -0.573 -23.189 -3.095 23.402 Atomic orbital electron populations 1.21611 0.79339 1.02612 1.00958 1.46964 1.05650 1.03704 1.77589 1.18775 0.91061 0.80356 0.95460 1.21765 1.36293 1.06420 0.93303 0.93178 1.25804 0.95135 0.96417 1.01530 1.70041 1.39025 1.14799 1.32823 0.85492 0.77873 0.78270 0.79679 1.19543 1.20572 1.19559 1.18260 0.91570 0.86634 0.92777 1.20803 1.00104 0.90621 1.12367 1.20930 0.93174 0.97355 0.96165 1.19447 0.93598 0.94054 1.09185 1.20554 0.98689 0.92293 0.88829 1.60332 1.27715 1.29709 1.14416 1.21966 0.99105 0.90296 0.95563 1.21904 0.97487 0.81302 0.98345 1.50631 1.15654 1.13043 1.37871 1.26950 1.00263 0.81265 0.95023 1.70566 1.04953 1.33230 1.22135 1.26541 0.99880 0.89717 0.95131 1.78028 0.99270 1.18642 1.22385 1.20781 0.99252 0.91320 0.96175 1.20775 0.93311 0.98489 1.11534 0.92977 0.92586 0.90109 0.97313 0.97214 0.92437 0.84778 0.83549 0.91216 0.93071 0.82853 0.91815 0.94326 0.84313 0.89045 0.72338 0.74681 0.86443 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.29 10.19 127.77 1.30 4.59 16 2 N -0.63 -27.19 2.99 -726.55 -2.17 -29.37 16 3 C 0.27 13.92 4.91 85.64 0.42 14.34 16 4 C -0.54 -30.21 9.39 25.60 0.24 -29.97 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 6 C 0.01 0.58 5.46 84.65 0.46 1.04 16 7 N -0.93 -54.58 13.29 21.45 0.28 -54.30 16 8 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 C 0.21 8.44 6.55 38.22 0.25 8.69 16 13 C -0.22 -6.63 9.21 22.40 0.21 -6.43 16 14 C -0.06 -1.43 9.69 22.25 0.22 -1.21 16 15 C -0.16 -4.24 5.39 -19.84 -0.11 -4.34 16 16 C 0.12 2.47 5.81 85.56 0.50 2.97 16 17 N -0.69 -11.81 6.49 -517.92 -3.36 -15.17 16 18 C 0.06 0.89 5.90 86.30 0.51 1.40 16 19 C 0.13 1.47 6.81 86.38 0.59 2.05 16 20 N -0.38 -5.81 3.69 -352.06 -1.30 -7.11 16 21 C 0.26 3.21 12.63 180.36 2.28 5.49 16 22 N -0.58 -10.47 11.19 -204.01 -2.28 -12.75 16 23 C 0.19 3.39 13.03 180.76 2.36 5.75 16 24 N -0.35 -7.36 12.58 -61.25 -0.77 -8.13 16 25 C -0.06 -1.88 9.69 22.25 0.22 -1.66 16 26 C -0.22 -9.05 9.21 22.40 0.21 -8.84 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.97 8.07 -2.39 -0.02 1.96 16 29 H 0.08 2.25 6.20 -2.38 -0.01 2.23 16 30 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 31 H 0.01 0.56 6.20 -2.39 -0.01 0.55 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.13 3.50 6.14 -2.91 -0.02 3.48 16 34 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 36 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 37 H 0.35 4.95 8.72 -89.69 -0.78 4.17 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.14 0.50 8.09 -2.38 -0.02 0.48 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.26 0.44 8.06 -2.91 -0.02 0.41 16 43 H 0.24 2.60 8.06 -2.92 -0.02 2.58 16 44 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 45 H 0.09 4.47 6.14 -2.91 -0.02 4.45 16 Total: -1.00 -73.12 379.67 2.28 -70.84 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.21 Total: 16.03 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 9.64 Total: -6.14 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -9.60 Total: -126.81 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.12 2.28 -70.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299345328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.250 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds