Wall clock time and date at job start Tue Mar 31 2020 12:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00356 * 2 1 4 4 H 1.48497 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46820 * 299.99957 * 3 2 1 6 6 H 1.48488 * 109.46947 * 59.99814 * 3 2 1 7 7 C 1.37885 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00155 * 184.94877 * 7 2 1 9 9 C 1.50701 * 119.99489 * 4.94167 * 7 2 1 10 10 H 1.09000 * 109.47554 * 329.58653 * 9 7 2 11 11 C 1.53006 * 109.46879 * 209.58247 * 9 7 2 12 12 C 1.50706 * 109.46743 * 65.00281 * 11 9 7 13 13 O 1.21279 * 120.00079 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.46500 * 119.99803 * 180.02562 * 14 12 11 16 16 C 1.54070 * 108.87790 * 277.97935 * 15 14 12 17 17 C 1.54058 * 112.81904 * 197.50628 * 16 15 14 18 18 C 1.50476 * 112.49867 * 318.28370 * 17 16 15 19 19 C 1.54244 * 108.52071 * 94.15324 * 18 17 16 20 20 C 1.45540 * 112.40369 * 280.01142 * 19 18 17 21 21 C 1.50474 * 108.87824 * 155.00524 * 15 14 12 22 22 C 1.50698 * 109.47271 * 89.58902 * 9 7 2 23 23 C 1.38240 * 120.00192 * 56.75971 * 22 9 7 24 24 C 1.38229 * 120.00115 * 179.81091 * 23 22 9 25 25 C 1.38235 * 119.99810 * 0.40306 * 24 23 22 26 26 C 1.38229 * 120.00372 * 359.85574 * 25 24 23 27 27 C 1.38234 * 119.99845 * 237.04086 * 22 9 7 28 28 H 0.96996 * 119.99445 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47105 * 305.00396 * 11 9 7 30 30 H 1.08995 * 109.47141 * 185.00144 * 11 9 7 31 31 H 0.96995 * 120.00240 * 0.02562 * 14 12 11 32 32 H 1.09000 * 108.85683 * 36.44256 * 15 14 12 33 33 H 1.09002 * 108.81323 * 318.36797 * 16 15 14 34 34 H 1.09002 * 108.81531 * 76.75108 * 16 15 14 35 35 H 1.08996 * 108.87992 * 197.50416 * 17 16 15 36 36 H 1.08997 * 108.87857 * 79.05876 * 17 16 15 37 37 H 1.08998 * 109.62992 * 334.43724 * 18 17 16 38 38 H 1.09005 * 109.62687 * 213.85947 * 18 17 16 39 39 H 1.08993 * 108.89512 * 40.76241 * 19 18 17 40 40 H 1.08997 * 108.89747 * 159.35796 * 19 18 17 41 41 H 1.08992 * 108.89703 * 182.68794 * 20 19 18 42 42 H 1.09004 * 108.89575 * 301.18360 * 20 19 18 43 43 H 1.09001 * 109.62608 * 95.21537 * 21 15 14 44 44 H 1.09000 * 109.78243 * 334.73178 * 21 15 14 45 45 H 1.08007 * 119.99771 * 0.02562 * 23 22 9 46 46 H 1.07996 * 120.00137 * 180.23447 * 24 23 22 47 47 H 1.08007 * 120.00035 * 179.82938 * 25 24 23 48 48 H 1.07997 * 120.00439 * 179.97438 * 26 25 24 49 49 H 1.07993 * 120.00021 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1960 0.0801 9 6 1.2551 -2.4967 -0.1135 10 1 0.2695 -2.3894 0.3395 11 6 2.0327 -3.5970 0.6115 12 6 2.0795 -3.2906 2.0863 13 8 1.5433 -2.2909 2.5153 14 7 2.7164 -4.1281 2.9286 15 6 2.7614 -3.8305 4.3624 16 6 3.8952 -2.8214 4.6267 17 6 4.3117 -2.7655 6.1089 18 6 3.1307 -2.8020 7.0407 19 6 2.8841 -4.2652 7.4618 20 6 2.1648 -5.0208 6.4469 21 6 2.9470 -5.1168 5.1210 22 6 1.1024 -2.8640 -1.5671 23 6 2.2211 -2.9887 -2.3697 24 6 2.0813 -3.3294 -3.7020 25 6 0.8224 -3.5373 -4.2339 26 6 -0.2965 -3.4073 -3.4327 27 6 -0.1565 -3.0704 -2.0993 28 1 -0.4849 0.8401 -0.0004 29 1 3.0480 -3.6441 0.2178 30 1 1.5375 -4.5553 0.4550 31 1 3.1449 -4.9278 2.5856 32 1 1.8141 -3.3799 4.6586 33 1 4.7621 -3.1020 4.0284 34 1 3.5624 -1.8301 4.3191 35 1 4.8705 -1.8461 6.2838 36 1 4.9585 -3.6156 6.3258 37 1 2.2493 -2.4143 6.5300 38 1 3.3416 -2.1977 7.9230 39 1 3.8446 -4.7464 7.6455 40 1 2.3032 -4.2740 8.3841 41 1 1.9800 -6.0276 6.8213 42 1 1.2074 -4.5353 6.2577 43 1 4.0058 -5.2687 5.3305 44 1 2.5670 -5.9510 4.5312 45 1 3.2045 -2.8234 -1.9549 46 1 2.9554 -3.4306 -4.3281 47 1 0.7129 -3.8008 -5.2756 48 1 -1.2801 -3.5692 -3.8483 49 1 -1.0307 -2.9689 -1.4733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332062477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:49 Heat of formation + Delta-G solvation = -38.483941 kcal Electronic energy + Delta-G solvation = -26728.159690 eV Core-core repulsion = 23232.715754 eV Total energy + Delta-G solvation = -3495.443936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.68129 -38.50215 -37.76631 -34.38142 -33.72034 -32.32484 -31.46115 -30.38665 -29.98536 -28.54310 -25.61341 -24.90658 -23.94117 -22.57614 -21.59468 -20.81787 -20.10201 -19.23583 -19.05886 -16.60090 -16.28901 -16.18769 -15.63933 -15.29462 -14.58870 -14.39041 -14.18442 -14.06233 -13.91680 -13.84827 -13.60926 -13.07246 -12.86200 -12.57275 -12.34594 -12.20982 -11.98325 -11.89233 -11.70405 -11.60143 -11.29522 -10.90644 -10.85934 -10.76911 -10.63365 -10.52602 -10.41239 -10.38373 -10.24019 -10.17043 -9.99594 -9.39304 -9.06065 -8.73484 -8.42219 -8.28322 -8.02761 -7.59427 -5.89134 -3.87789 2.30624 2.36483 3.38708 3.45821 3.47989 3.63871 3.79680 4.54612 4.55826 4.67330 4.77029 4.92525 5.11946 5.16421 5.22718 5.33826 5.41781 5.45054 5.55501 5.67648 5.72399 5.75048 5.77612 5.84572 5.86583 5.97440 6.02671 6.09392 6.11325 6.14812 6.19488 6.23769 6.28000 6.31678 6.32659 6.43167 6.49744 6.56425 6.57315 6.84366 6.94073 7.06873 7.10602 7.32810 7.47985 7.56723 7.92543 7.97216 8.09000 8.21967 8.43203 9.11476 9.20721 9.72892 11.21133 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.003786 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.902324 B = 7394.777394 C = 8644.075799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.487 4.487 8 H 0.050 0.950 9 C 0.078 3.922 10 H 0.072 0.928 11 C -0.122 4.122 12 C 0.510 3.490 13 O -0.494 6.494 14 N -0.750 5.750 15 C 0.151 3.849 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.022 4.022 23 C -0.115 4.115 24 C -0.133 4.133 25 C -0.156 4.156 26 C -0.129 4.129 27 C -0.119 4.119 28 H 0.258 0.742 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.390 0.610 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 -12.156 7.949 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.059 3.941 10 H 0.090 0.910 11 C -0.163 4.163 12 C 0.297 3.703 13 O -0.364 6.364 14 N -0.405 5.405 15 C 0.046 3.954 16 C -0.168 4.168 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.023 4.023 23 C -0.133 4.133 24 C -0.151 4.151 25 C -0.174 4.174 26 C -0.147 4.147 27 C -0.138 4.138 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.223 0.777 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.475 -11.247 8.257 14.988 hybrid contribution 0.756 0.763 -0.348 1.129 sum 6.232 -10.484 7.909 14.536 Atomic orbital electron populations 1.69913 1.05865 1.26138 1.49894 1.24809 0.94645 0.98774 0.94429 0.86677 0.80211 0.84597 0.77316 1.19948 1.21246 1.21164 1.20697 0.92322 0.89624 1.49845 0.93185 1.17837 0.98808 0.91509 0.85901 0.90958 1.21771 1.02312 1.00590 0.91594 1.20892 0.77724 0.82839 0.88859 1.90759 1.42917 1.25008 1.77756 1.46476 1.59331 1.27529 1.07172 1.20628 0.99570 0.94414 0.80812 1.22325 0.98298 1.00762 0.95417 1.21284 0.97736 1.01448 0.94618 1.21395 0.99427 0.96190 0.99002 1.20493 1.00618 0.95824 0.98447 1.20429 0.99564 1.00272 0.95142 1.21647 1.00963 0.97212 0.96320 1.20775 0.91702 0.90465 0.99319 1.20957 0.99025 1.00129 0.93165 1.20976 0.96531 1.01856 0.95710 1.20793 0.93119 1.04765 0.98709 1.20986 0.97570 1.01560 0.94565 1.21104 0.97753 1.00108 0.94789 0.93269 0.90692 0.91816 0.77713 0.90102 0.92254 0.91202 0.92450 0.92426 0.91131 0.92154 0.92335 0.92503 0.92242 0.91779 0.91341 0.91213 0.86878 0.87682 0.87825 0.87655 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 12.85 55.43 0.71 -25.45 16 2 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 3 Si 0.88 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.49 -13.18 6.38 -34.44 -0.22 -13.40 16 8 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 9 C 0.08 1.88 1.68 -92.92 -0.16 1.73 16 10 H 0.07 2.01 6.95 -51.93 -0.36 1.64 16 11 C -0.12 -2.38 4.95 -27.88 -0.14 -2.51 16 12 C 0.51 10.17 7.49 -10.98 -0.08 10.09 16 13 O -0.49 -12.35 14.66 5.56 0.08 -12.27 16 14 N -0.75 -11.16 4.95 -54.49 -0.27 -11.43 16 15 C 0.15 2.06 1.94 -68.63 -0.13 1.93 16 16 C -0.13 -1.79 5.37 -25.62 -0.14 -1.92 16 17 C -0.11 -1.25 5.31 -27.44 -0.15 -1.39 16 18 C -0.12 -1.29 5.61 -27.34 -0.15 -1.44 16 19 C -0.12 -1.05 5.26 -29.60 -0.16 -1.21 16 20 C -0.12 -1.11 5.26 -29.60 -0.16 -1.27 16 21 C -0.12 -1.26 5.17 -27.34 -0.14 -1.40 16 22 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 23 C -0.11 -2.33 8.86 -39.58 -0.35 -2.68 16 24 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 25 C -0.16 -2.73 10.05 -39.59 -0.40 -3.13 16 26 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 27 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.07 1.35 7.76 -51.93 -0.40 0.95 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.39 4.57 8.48 -40.82 -0.35 4.22 16 32 H 0.08 1.32 6.07 -51.93 -0.32 1.01 16 33 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.56 6.63 -51.93 -0.34 0.22 16 37 H 0.07 0.87 6.97 -51.93 -0.36 0.51 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 43 H 0.07 0.63 6.98 -51.93 -0.36 0.27 16 44 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 45 H 0.11 2.22 7.75 -52.48 -0.41 1.81 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.10 1.52 8.06 -52.48 -0.42 1.09 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.46 7.95 -52.49 -0.42 2.04 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -31.88 382.25 -11.15 -43.03 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.27 Total: 7.01 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -4.14 Total: -24.03 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.44 Total: -36.88 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.88 -11.15 -43.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332062477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds