Wall clock time and date at job start Tue Mar 31 2020 12:00:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86802 * 120.00356 * 2 1
4 4 H 1.48497 * 109.46971 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.46820 * 299.99957 * 3 2 1
6 6 H 1.48488 * 109.46947 * 59.99814 * 3 2 1
7 7 C 1.37885 * 119.99905 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00155 * 184.94877 * 7 2 1
9 9 C 1.50701 * 119.99489 * 4.94167 * 7 2 1
10 10 H 1.09000 * 109.47554 * 329.58653 * 9 7 2
11 11 C 1.53006 * 109.46879 * 209.58247 * 9 7 2
12 12 C 1.50706 * 109.46743 * 65.00281 * 11 9 7
13 13 O 1.21279 * 120.00079 * 0.02562 * 12 11 9
14 14 N 1.34778 * 119.99680 * 179.97438 * 12 11 9
15 15 C 1.46500 * 119.99803 * 180.02562 * 14 12 11
16 16 C 1.54070 * 108.87790 * 277.97935 * 15 14 12
17 17 C 1.54058 * 112.81904 * 197.50628 * 16 15 14
18 18 C 1.50476 * 112.49867 * 318.28370 * 17 16 15
19 19 C 1.54244 * 108.52071 * 94.15324 * 18 17 16
20 20 C 1.45540 * 112.40369 * 280.01142 * 19 18 17
21 21 C 1.50474 * 108.87824 * 155.00524 * 15 14 12
22 22 C 1.50698 * 109.47271 * 89.58902 * 9 7 2
23 23 C 1.38240 * 120.00192 * 56.75971 * 22 9 7
24 24 C 1.38229 * 120.00115 * 179.81091 * 23 22 9
25 25 C 1.38235 * 119.99810 * 0.40306 * 24 23 22
26 26 C 1.38229 * 120.00372 * 359.85574 * 25 24 23
27 27 C 1.38234 * 119.99845 * 237.04086 * 22 9 7
28 28 H 0.96996 * 119.99445 * 0.02562 * 1 2 3
29 29 H 1.08997 * 109.47105 * 305.00396 * 11 9 7
30 30 H 1.08995 * 109.47141 * 185.00144 * 11 9 7
31 31 H 0.96995 * 120.00240 * 0.02562 * 14 12 11
32 32 H 1.09000 * 108.85683 * 36.44256 * 15 14 12
33 33 H 1.09002 * 108.81323 * 318.36797 * 16 15 14
34 34 H 1.09002 * 108.81531 * 76.75108 * 16 15 14
35 35 H 1.08996 * 108.87992 * 197.50416 * 17 16 15
36 36 H 1.08997 * 108.87857 * 79.05876 * 17 16 15
37 37 H 1.08998 * 109.62992 * 334.43724 * 18 17 16
38 38 H 1.09005 * 109.62687 * 213.85947 * 18 17 16
39 39 H 1.08993 * 108.89512 * 40.76241 * 19 18 17
40 40 H 1.08997 * 108.89747 * 159.35796 * 19 18 17
41 41 H 1.08992 * 108.89703 * 182.68794 * 20 19 18
42 42 H 1.09004 * 108.89575 * 301.18360 * 20 19 18
43 43 H 1.09001 * 109.62608 * 95.21537 * 21 15 14
44 44 H 1.09000 * 109.78243 * 334.73178 * 21 15 14
45 45 H 1.08007 * 119.99771 * 0.02562 * 23 22 9
46 46 H 1.07996 * 120.00137 * 180.23447 * 24 23 22
47 47 H 1.08007 * 120.00035 * 179.82938 * 25 24 23
48 48 H 1.07997 * 120.00439 * 179.97438 * 26 25 24
49 49 H 1.07993 * 120.00021 * 359.97438 * 27 22 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3462 -0.0006
5 1 1.8905 2.3964 -1.2126
6 1 1.8905 2.3963 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0814 -1.1960 0.0801
9 6 1.2551 -2.4967 -0.1135
10 1 0.2695 -2.3894 0.3395
11 6 2.0327 -3.5970 0.6115
12 6 2.0795 -3.2906 2.0863
13 8 1.5433 -2.2909 2.5153
14 7 2.7164 -4.1281 2.9286
15 6 2.7614 -3.8305 4.3624
16 6 3.8952 -2.8214 4.6267
17 6 4.3117 -2.7655 6.1089
18 6 3.1307 -2.8020 7.0407
19 6 2.8841 -4.2652 7.4618
20 6 2.1648 -5.0208 6.4469
21 6 2.9470 -5.1168 5.1210
22 6 1.1024 -2.8640 -1.5671
23 6 2.2211 -2.9887 -2.3697
24 6 2.0813 -3.3294 -3.7020
25 6 0.8224 -3.5373 -4.2339
26 6 -0.2965 -3.4073 -3.4327
27 6 -0.1565 -3.0704 -2.0993
28 1 -0.4849 0.8401 -0.0004
29 1 3.0480 -3.6441 0.2178
30 1 1.5375 -4.5553 0.4550
31 1 3.1449 -4.9278 2.5856
32 1 1.8141 -3.3799 4.6586
33 1 4.7621 -3.1020 4.0284
34 1 3.5624 -1.8301 4.3191
35 1 4.8705 -1.8461 6.2838
36 1 4.9585 -3.6156 6.3258
37 1 2.2493 -2.4143 6.5300
38 1 3.3416 -2.1977 7.9230
39 1 3.8446 -4.7464 7.6455
40 1 2.3032 -4.2740 8.3841
41 1 1.9800 -6.0276 6.8213
42 1 1.2074 -4.5353 6.2577
43 1 4.0058 -5.2687 5.3305
44 1 2.5670 -5.9510 4.5312
45 1 3.2045 -2.8234 -1.9549
46 1 2.9554 -3.4306 -4.3281
47 1 0.7129 -3.8008 -5.2756
48 1 -1.2801 -3.5692 -3.8483
49 1 -1.0307 -2.9689 -1.4733
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000332062477.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:48
Heat of formation + Delta-G solvation = -55.970566 kcal
Electronic energy + Delta-G solvation = -26728.917967 eV
Core-core repulsion = 23232.715754 eV
Total energy + Delta-G solvation = -3496.202213 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.00771 -39.94914 -39.11215 -35.92500 -35.31544 -33.43595 -33.21947 -31.65839
-31.49070 -30.02891 -27.49172 -25.86458 -25.23025 -24.12138 -23.12535 -21.89422
-21.46265 -20.63930 -20.32070 -18.51502 -17.88040 -17.40662 -17.09698 -16.49307
-16.38434 -15.77307 -15.55877 -15.45606 -15.36639 -15.03965 -14.68409 -14.42810
-14.18605 -13.96798 -13.91266 -13.62208 -13.58210 -13.18146 -13.12624 -12.90646
-12.88082 -12.54328 -12.44411 -12.30167 -11.93498 -11.83963 -11.68203 -11.56379
-11.32916 -11.27712 -11.23347 -11.15488 -10.97870 -10.55845 -10.32185 -9.81105
-9.54515 -9.19544 -8.04178 -6.06227 0.77585 0.83881 1.33095 1.35373
1.43694 2.03842 2.44649 2.46969 3.18248 3.35342 3.65494 3.80915
4.04296 4.15492 4.20305 4.25773 4.27671 4.31516 4.36309 4.41669
4.45580 4.52297 4.55929 4.59903 4.65641 4.75312 4.85830 4.92034
4.94387 4.99835 5.06681 5.11245 5.21817 5.25858 5.30929 5.31749
5.34650 5.38081 5.43250 5.50786 5.53361 5.57417 5.67105 5.77610
5.81329 5.83607 5.96445 6.18262 6.42252 6.46471 6.87743 7.01600
7.55465 7.69169 9.05774
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013955 B = 0.003786 C = 0.003238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2005.902324 B = 7394.777394 C = 8644.075799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C 0.020 3.980
3 Si 0.932 3.068
4 H -0.264 1.264
5 H -0.280 1.280
6 H -0.293 1.293
7 C -0.478 4.478
8 H 0.045 0.955
9 C 0.081 3.919
10 H 0.022 0.978
11 C -0.116 4.116
12 C 0.508 3.492
13 O -0.557 6.557
14 N -0.729 5.729
15 C 0.152 3.848
16 C -0.125 4.125
17 C -0.107 4.107
18 C -0.125 4.125
19 C -0.113 4.113
20 C -0.116 4.116
21 C -0.115 4.115
22 C -0.046 4.046
23 C -0.127 4.127
24 C -0.126 4.126
25 C -0.147 4.147
26 C -0.129 4.129
27 C -0.145 4.145
28 H 0.252 0.748
29 H 0.095 0.905
30 H 0.090 0.910
31 H 0.410 0.590
32 H 0.045 0.955
33 H 0.065 0.935
34 H 0.021 0.979
35 H 0.056 0.944
36 H 0.084 0.916
37 H 0.039 0.961
38 H 0.072 0.928
39 H 0.078 0.922
40 H 0.066 0.934
41 H 0.082 0.918
42 H 0.041 0.959
43 H 0.090 0.910
44 H 0.082 0.918
45 H 0.116 0.884
46 H 0.142 0.858
47 H 0.144 0.856
48 H 0.132 0.868
49 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.574 -14.867 7.057 18.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.178 4.178
3 Si 0.760 3.240
4 H -0.188 1.188
5 H -0.206 1.206
6 H -0.220 1.220
7 C -0.516 4.516
8 H 0.063 0.937
9 C 0.062 3.938
10 H 0.040 0.960
11 C -0.156 4.156
12 C 0.295 3.705
13 O -0.433 6.433
14 N -0.383 5.383
15 C 0.047 3.953
16 C -0.164 4.164
17 C -0.144 4.144
18 C -0.163 4.163
19 C -0.150 4.150
20 C -0.153 4.153
21 C -0.153 4.153
22 C -0.046 4.046
23 C -0.145 4.145
24 C -0.144 4.144
25 C -0.165 4.165
26 C -0.147 4.147
27 C -0.163 4.163
28 H 0.061 0.939
29 H 0.113 0.887
30 H 0.108 0.892
31 H 0.247 0.753
32 H 0.064 0.936
33 H 0.084 0.916
34 H 0.040 0.960
35 H 0.075 0.925
36 H 0.103 0.897
37 H 0.058 0.942
38 H 0.090 0.910
39 H 0.097 0.903
40 H 0.085 0.915
41 H 0.101 0.899
42 H 0.060 0.940
43 H 0.109 0.891
44 H 0.100 0.900
45 H 0.134 0.866
46 H 0.160 0.840
47 H 0.162 0.838
48 H 0.149 0.851
49 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 8.038 -14.017 7.367 17.758
hybrid contribution -0.027 1.509 -0.105 1.513
sum 8.011 -12.508 7.261 16.533
Atomic orbital electron populations
1.70063 1.07110 1.26148 1.52490 1.25498 0.95327 1.01750 0.95272
0.85897 0.79658 0.81526 0.76960 1.18839 1.20612 1.22016 1.20974
0.92046 0.91029 1.47574 0.93718 1.17614 0.96358 0.92027 0.87815
0.95963 1.21664 1.02923 1.00154 0.90889 1.21063 0.77348 0.82490
0.89607 1.90745 1.45863 1.27909 1.78740 1.46259 1.57585 1.27061
1.07439 1.20739 0.97950 0.96425 0.80139 1.22270 0.98196 0.98096
0.97836 1.21261 0.98190 1.02660 0.92335 1.21413 0.97940 0.97894
0.99044 1.20481 1.01749 0.94290 0.98514 1.20440 0.98479 1.01423
0.95006 1.21621 1.02560 0.94944 0.96163 1.20566 0.93018 0.92859
0.98206 1.21047 0.98277 1.00816 0.94336 1.21379 0.98279 0.99886
0.94854 1.21269 0.92233 1.02626 1.00361 1.21286 0.99668 1.00420
0.93287 1.21108 0.96853 1.02027 0.96316 0.93876 0.88680 0.89169
0.75291 0.93625 0.91582 0.95993 0.92471 0.89705 0.94212 0.90976
0.90295 0.91523 0.89950 0.94024 0.89125 0.89975 0.86597 0.84046
0.83805 0.85060 0.88965
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -57.91 12.85 21.45 0.28 -57.64 16
2 C 0.02 1.18 5.45 84.66 0.46 1.64 16
3 Si 0.93 47.63 29.54 68.60 2.03 49.65 16
4 H -0.26 -12.86 7.11 99.48 0.71 -12.16 16
5 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16
6 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16
7 C -0.48 -26.92 6.38 25.60 0.16 -26.75 16
8 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16
9 C 0.08 4.08 1.68 -12.28 -0.02 4.06 16
10 H 0.02 1.33 6.95 -2.39 -0.02 1.31 16
11 C -0.12 -4.59 4.95 29.85 0.15 -4.44 16
12 C 0.51 21.10 7.49 87.66 0.66 21.76 16
13 O -0.56 -30.05 14.66 -3.03 -0.04 -30.09 16
14 N -0.73 -21.70 4.95 -444.70 -2.20 -23.90 16
15 C 0.15 4.23 1.94 44.54 0.09 4.32 16
16 C -0.13 -3.54 5.37 31.31 0.17 -3.38 16
17 C -0.11 -2.25 5.31 30.14 0.16 -2.09 16
18 C -0.13 -2.59 5.61 30.20 0.17 -2.42 16
19 C -0.11 -1.79 5.26 28.74 0.15 -1.64 16
20 C -0.12 -2.01 5.26 28.74 0.15 -1.86 16
21 C -0.12 -2.10 5.17 30.20 0.16 -1.94 16
22 C -0.05 -2.08 4.77 -19.87 -0.09 -2.17 16
23 C -0.13 -4.98 8.86 22.27 0.20 -4.78 16
24 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16
25 C -0.15 -4.59 10.05 22.27 0.22 -4.37 16
26 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16
27 C -0.14 -6.32 9.67 22.27 0.22 -6.10 16
28 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16
29 H 0.09 3.35 7.76 -2.39 -0.02 3.33 16
30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16
31 H 0.41 8.86 8.48 -92.71 -0.79 8.08 16
32 H 0.05 1.62 6.07 -2.39 -0.01 1.61 16
33 H 0.07 1.74 8.12 -2.39 -0.02 1.72 16
34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.08 1.36 6.63 -2.39 -0.02 1.35 16
37 H 0.04 1.06 6.97 -2.39 -0.02 1.04 16
38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16
39 H 0.08 0.98 7.47 -2.39 -0.02 0.96 16
40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
42 H 0.04 0.91 7.47 -2.38 -0.02 0.89 16
43 H 0.09 1.31 6.98 -2.39 -0.02 1.30 16
44 H 0.08 1.33 7.86 -2.39 -0.02 1.31 16
45 H 0.12 4.39 7.75 -2.91 -0.02 4.36 16
46 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16
47 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16
48 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16
49 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16
Total: -1.00 -76.19 382.25 3.63 -72.56
By element:
Atomic # 1 Polarization: 27.69 SS G_CDS: 0.14 Total: 27.83 kcal
Atomic # 6 Polarization: -41.85 SS G_CDS: 3.44 Total: -38.41 kcal
Atomic # 7 Polarization: -79.61 SS G_CDS: -1.93 Total: -81.53 kcal
Atomic # 8 Polarization: -30.05 SS G_CDS: -0.04 Total: -30.09 kcal
Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal
Total: -76.19 3.63 -72.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000332062477.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.586 kcal
(2) G-P(sol) polarization free energy of solvation -76.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.971 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds