Wall clock time and date at job start Tue Mar 31 2020 12:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00356 * 2 1 4 4 H 1.48497 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46820 * 299.99957 * 3 2 1 6 6 H 1.48488 * 109.46947 * 59.99814 * 3 2 1 7 7 C 1.37885 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00155 * 184.94877 * 7 2 1 9 9 C 1.50701 * 119.99489 * 4.94167 * 7 2 1 10 10 H 1.09000 * 109.47554 * 329.58653 * 9 7 2 11 11 C 1.53006 * 109.46879 * 209.58247 * 9 7 2 12 12 C 1.50706 * 109.46743 * 65.00281 * 11 9 7 13 13 O 1.21279 * 120.00079 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.46500 * 119.99803 * 180.02562 * 14 12 11 16 16 C 1.54070 * 108.87790 * 277.97935 * 15 14 12 17 17 C 1.54058 * 112.81904 * 197.50628 * 16 15 14 18 18 C 1.50476 * 112.49867 * 318.28370 * 17 16 15 19 19 C 1.54244 * 108.52071 * 94.15324 * 18 17 16 20 20 C 1.45540 * 112.40369 * 280.01142 * 19 18 17 21 21 C 1.50474 * 108.87824 * 155.00524 * 15 14 12 22 22 C 1.50698 * 109.47271 * 89.58902 * 9 7 2 23 23 C 1.38240 * 120.00192 * 56.75971 * 22 9 7 24 24 C 1.38229 * 120.00115 * 179.81091 * 23 22 9 25 25 C 1.38235 * 119.99810 * 0.40306 * 24 23 22 26 26 C 1.38229 * 120.00372 * 359.85574 * 25 24 23 27 27 C 1.38234 * 119.99845 * 237.04086 * 22 9 7 28 28 H 0.96996 * 119.99445 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47105 * 305.00396 * 11 9 7 30 30 H 1.08995 * 109.47141 * 185.00144 * 11 9 7 31 31 H 0.96995 * 120.00240 * 0.02562 * 14 12 11 32 32 H 1.09000 * 108.85683 * 36.44256 * 15 14 12 33 33 H 1.09002 * 108.81323 * 318.36797 * 16 15 14 34 34 H 1.09002 * 108.81531 * 76.75108 * 16 15 14 35 35 H 1.08996 * 108.87992 * 197.50416 * 17 16 15 36 36 H 1.08997 * 108.87857 * 79.05876 * 17 16 15 37 37 H 1.08998 * 109.62992 * 334.43724 * 18 17 16 38 38 H 1.09005 * 109.62687 * 213.85947 * 18 17 16 39 39 H 1.08993 * 108.89512 * 40.76241 * 19 18 17 40 40 H 1.08997 * 108.89747 * 159.35796 * 19 18 17 41 41 H 1.08992 * 108.89703 * 182.68794 * 20 19 18 42 42 H 1.09004 * 108.89575 * 301.18360 * 20 19 18 43 43 H 1.09001 * 109.62608 * 95.21537 * 21 15 14 44 44 H 1.09000 * 109.78243 * 334.73178 * 21 15 14 45 45 H 1.08007 * 119.99771 * 0.02562 * 23 22 9 46 46 H 1.07996 * 120.00137 * 180.23447 * 24 23 22 47 47 H 1.08007 * 120.00035 * 179.82938 * 25 24 23 48 48 H 1.07997 * 120.00439 * 179.97438 * 26 25 24 49 49 H 1.07993 * 120.00021 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1960 0.0801 9 6 1.2551 -2.4967 -0.1135 10 1 0.2695 -2.3894 0.3395 11 6 2.0327 -3.5970 0.6115 12 6 2.0795 -3.2906 2.0863 13 8 1.5433 -2.2909 2.5153 14 7 2.7164 -4.1281 2.9286 15 6 2.7614 -3.8305 4.3624 16 6 3.8952 -2.8214 4.6267 17 6 4.3117 -2.7655 6.1089 18 6 3.1307 -2.8020 7.0407 19 6 2.8841 -4.2652 7.4618 20 6 2.1648 -5.0208 6.4469 21 6 2.9470 -5.1168 5.1210 22 6 1.1024 -2.8640 -1.5671 23 6 2.2211 -2.9887 -2.3697 24 6 2.0813 -3.3294 -3.7020 25 6 0.8224 -3.5373 -4.2339 26 6 -0.2965 -3.4073 -3.4327 27 6 -0.1565 -3.0704 -2.0993 28 1 -0.4849 0.8401 -0.0004 29 1 3.0480 -3.6441 0.2178 30 1 1.5375 -4.5553 0.4550 31 1 3.1449 -4.9278 2.5856 32 1 1.8141 -3.3799 4.6586 33 1 4.7621 -3.1020 4.0284 34 1 3.5624 -1.8301 4.3191 35 1 4.8705 -1.8461 6.2838 36 1 4.9585 -3.6156 6.3258 37 1 2.2493 -2.4143 6.5300 38 1 3.3416 -2.1977 7.9230 39 1 3.8446 -4.7464 7.6455 40 1 2.3032 -4.2740 8.3841 41 1 1.9800 -6.0276 6.8213 42 1 1.2074 -4.5353 6.2577 43 1 4.0058 -5.2687 5.3305 44 1 2.5670 -5.9510 4.5312 45 1 3.2045 -2.8234 -1.9549 46 1 2.9554 -3.4306 -4.3281 47 1 0.7129 -3.8008 -5.2756 48 1 -1.2801 -3.5692 -3.8483 49 1 -1.0307 -2.9689 -1.4733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332062477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:48 Heat of formation + Delta-G solvation = -55.970566 kcal Electronic energy + Delta-G solvation = -26728.917967 eV Core-core repulsion = 23232.715754 eV Total energy + Delta-G solvation = -3496.202213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.00771 -39.94914 -39.11215 -35.92500 -35.31544 -33.43595 -33.21947 -31.65839 -31.49070 -30.02891 -27.49172 -25.86458 -25.23025 -24.12138 -23.12535 -21.89422 -21.46265 -20.63930 -20.32070 -18.51502 -17.88040 -17.40662 -17.09698 -16.49307 -16.38434 -15.77307 -15.55877 -15.45606 -15.36639 -15.03965 -14.68409 -14.42810 -14.18605 -13.96798 -13.91266 -13.62208 -13.58210 -13.18146 -13.12624 -12.90646 -12.88082 -12.54328 -12.44411 -12.30167 -11.93498 -11.83963 -11.68203 -11.56379 -11.32916 -11.27712 -11.23347 -11.15488 -10.97870 -10.55845 -10.32185 -9.81105 -9.54515 -9.19544 -8.04178 -6.06227 0.77585 0.83881 1.33095 1.35373 1.43694 2.03842 2.44649 2.46969 3.18248 3.35342 3.65494 3.80915 4.04296 4.15492 4.20305 4.25773 4.27671 4.31516 4.36309 4.41669 4.45580 4.52297 4.55929 4.59903 4.65641 4.75312 4.85830 4.92034 4.94387 4.99835 5.06681 5.11245 5.21817 5.25858 5.30929 5.31749 5.34650 5.38081 5.43250 5.50786 5.53361 5.57417 5.67105 5.77610 5.81329 5.83607 5.96445 6.18262 6.42252 6.46471 6.87743 7.01600 7.55465 7.69169 9.05774 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.003786 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.902324 B = 7394.777394 C = 8644.075799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.020 3.980 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.293 1.293 7 C -0.478 4.478 8 H 0.045 0.955 9 C 0.081 3.919 10 H 0.022 0.978 11 C -0.116 4.116 12 C 0.508 3.492 13 O -0.557 6.557 14 N -0.729 5.729 15 C 0.152 3.848 16 C -0.125 4.125 17 C -0.107 4.107 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.046 4.046 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.129 4.129 27 C -0.145 4.145 28 H 0.252 0.748 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.410 0.590 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.142 0.858 47 H 0.144 0.856 48 H 0.132 0.868 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 -14.867 7.057 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.220 1.220 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.062 3.938 10 H 0.040 0.960 11 C -0.156 4.156 12 C 0.295 3.705 13 O -0.433 6.433 14 N -0.383 5.383 15 C 0.047 3.953 16 C -0.164 4.164 17 C -0.144 4.144 18 C -0.163 4.163 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.046 4.046 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.165 4.165 26 C -0.147 4.147 27 C -0.163 4.163 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.247 0.753 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.134 0.866 46 H 0.160 0.840 47 H 0.162 0.838 48 H 0.149 0.851 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.038 -14.017 7.367 17.758 hybrid contribution -0.027 1.509 -0.105 1.513 sum 8.011 -12.508 7.261 16.533 Atomic orbital electron populations 1.70063 1.07110 1.26148 1.52490 1.25498 0.95327 1.01750 0.95272 0.85897 0.79658 0.81526 0.76960 1.18839 1.20612 1.22016 1.20974 0.92046 0.91029 1.47574 0.93718 1.17614 0.96358 0.92027 0.87815 0.95963 1.21664 1.02923 1.00154 0.90889 1.21063 0.77348 0.82490 0.89607 1.90745 1.45863 1.27909 1.78740 1.46259 1.57585 1.27061 1.07439 1.20739 0.97950 0.96425 0.80139 1.22270 0.98196 0.98096 0.97836 1.21261 0.98190 1.02660 0.92335 1.21413 0.97940 0.97894 0.99044 1.20481 1.01749 0.94290 0.98514 1.20440 0.98479 1.01423 0.95006 1.21621 1.02560 0.94944 0.96163 1.20566 0.93018 0.92859 0.98206 1.21047 0.98277 1.00816 0.94336 1.21379 0.98279 0.99886 0.94854 1.21269 0.92233 1.02626 1.00361 1.21286 0.99668 1.00420 0.93287 1.21108 0.96853 1.02027 0.96316 0.93876 0.88680 0.89169 0.75291 0.93625 0.91582 0.95993 0.92471 0.89705 0.94212 0.90976 0.90295 0.91523 0.89950 0.94024 0.89125 0.89975 0.86597 0.84046 0.83805 0.85060 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.91 12.85 21.45 0.28 -57.64 16 2 C 0.02 1.18 5.45 84.66 0.46 1.64 16 3 Si 0.93 47.63 29.54 68.60 2.03 49.65 16 4 H -0.26 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 7 C -0.48 -26.92 6.38 25.60 0.16 -26.75 16 8 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 9 C 0.08 4.08 1.68 -12.28 -0.02 4.06 16 10 H 0.02 1.33 6.95 -2.39 -0.02 1.31 16 11 C -0.12 -4.59 4.95 29.85 0.15 -4.44 16 12 C 0.51 21.10 7.49 87.66 0.66 21.76 16 13 O -0.56 -30.05 14.66 -3.03 -0.04 -30.09 16 14 N -0.73 -21.70 4.95 -444.70 -2.20 -23.90 16 15 C 0.15 4.23 1.94 44.54 0.09 4.32 16 16 C -0.13 -3.54 5.37 31.31 0.17 -3.38 16 17 C -0.11 -2.25 5.31 30.14 0.16 -2.09 16 18 C -0.13 -2.59 5.61 30.20 0.17 -2.42 16 19 C -0.11 -1.79 5.26 28.74 0.15 -1.64 16 20 C -0.12 -2.01 5.26 28.74 0.15 -1.86 16 21 C -0.12 -2.10 5.17 30.20 0.16 -1.94 16 22 C -0.05 -2.08 4.77 -19.87 -0.09 -2.17 16 23 C -0.13 -4.98 8.86 22.27 0.20 -4.78 16 24 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 25 C -0.15 -4.59 10.05 22.27 0.22 -4.37 16 26 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 27 C -0.14 -6.32 9.67 22.27 0.22 -6.10 16 28 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.09 3.35 7.76 -2.39 -0.02 3.33 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.41 8.86 8.48 -92.71 -0.79 8.08 16 32 H 0.05 1.62 6.07 -2.39 -0.01 1.61 16 33 H 0.07 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.36 6.63 -2.39 -0.02 1.35 16 37 H 0.04 1.06 6.97 -2.39 -0.02 1.04 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.08 0.98 7.47 -2.39 -0.02 0.96 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.04 0.91 7.47 -2.38 -0.02 0.89 16 43 H 0.09 1.31 6.98 -2.39 -0.02 1.30 16 44 H 0.08 1.33 7.86 -2.39 -0.02 1.31 16 45 H 0.12 4.39 7.75 -2.91 -0.02 4.36 16 46 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 47 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 48 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 49 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16 Total: -1.00 -76.19 382.25 3.63 -72.56 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.14 Total: 27.83 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.44 Total: -38.41 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.93 Total: -81.53 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.04 Total: -30.09 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -76.19 3.63 -72.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332062477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.586 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds