Wall clock time and date at job start Tue Mar 31 2020 12:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47031 * 275.40489 * 3 2 1 5 5 H 1.48499 * 109.47043 * 35.40570 * 3 2 1 6 6 H 1.48494 * 109.46998 * 155.40828 * 3 2 1 7 7 C 1.39931 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00675 * 341.79584 * 7 2 1 9 9 C 1.41409 * 119.99833 * 161.79987 * 7 2 1 10 10 C 1.40783 * 120.20753 * 150.26238 * 9 7 2 11 11 C 1.37650 * 119.89562 * 179.72156 * 10 9 7 12 12 C 1.38528 * 120.32363 * 359.97438 * 11 10 9 13 13 C 1.39296 * 120.42325 * 0.02562 * 12 11 10 14 14 N 1.39677 * 119.94942 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00326 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.47232 * 274.99613 * 15 14 13 17 17 C 1.53005 * 109.47185 * 179.97438 * 16 15 14 18 18 C 1.52925 * 109.49699 * 59.89692 * 17 16 15 19 19 C 1.53109 * 109.54766 * 60.33971 * 18 17 16 20 20 C 1.53111 * 109.14779 * 176.85150 * 19 18 17 21 21 O 1.42895 * 109.41388 * 302.47915 * 20 19 18 22 22 C 1.42902 * 114.13308 * 61.15437 * 21 20 19 23 23 C 1.53109 * 109.39919 * 298.83178 * 22 21 20 24 24 C 1.52940 * 109.59932 * 300.16616 * 18 17 16 25 25 C 1.53007 * 109.47085 * 154.99854 * 15 14 13 26 26 C 1.38316 * 120.09353 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00388 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.05474 * 359.69808 * 10 9 7 29 29 H 1.07996 * 119.83859 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.78528 * 180.02562 * 12 11 10 31 31 H 0.97000 * 120.00115 * 179.97438 * 14 13 12 32 32 H 1.08998 * 109.46629 * 35.00183 * 15 14 13 33 33 H 1.08998 * 109.47352 * 299.96153 * 16 15 14 34 34 H 1.09007 * 109.46670 * 59.95852 * 16 15 14 35 35 H 1.08998 * 109.47083 * 299.88454 * 17 16 15 36 36 H 1.09006 * 109.46633 * 179.89810 * 17 16 15 37 37 H 1.08998 * 109.52489 * 296.74986 * 19 18 17 38 38 H 1.08996 * 109.52069 * 56.95426 * 19 18 17 39 39 H 1.09000 * 109.47630 * 182.49933 * 20 19 18 40 40 H 1.08996 * 109.47940 * 62.46483 * 20 19 18 41 41 H 1.09000 * 109.48432 * 178.85340 * 22 21 20 42 42 H 1.09004 * 109.48748 * 58.80891 * 22 21 20 43 43 H 1.09001 * 109.52272 * 297.65498 * 23 22 21 44 44 H 1.08997 * 109.52604 * 177.45771 * 23 22 21 45 45 H 1.09000 * 109.46941 * 299.84973 * 24 18 17 46 46 H 1.08997 * 109.46654 * 179.86399 * 24 18 17 47 47 H 1.08998 * 109.47466 * 300.05455 * 25 15 14 48 48 H 1.09000 * 109.47190 * 60.06174 * 25 15 14 49 49 H 1.08003 * 120.15822 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3756 2.1123 -1.3938 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2119 -0.0005 8 1 1.5085 -2.1240 0.2912 9 6 3.3689 -1.2423 -0.3831 10 6 4.2368 -2.2069 0.1632 11 6 5.5592 -2.2343 -0.2180 12 6 6.0411 -1.3172 -1.1377 13 6 5.1942 -0.3571 -1.6866 14 7 5.6908 0.5631 -2.6127 15 6 7.1011 0.5177 -3.0065 16 6 7.9383 1.3047 -1.9962 17 6 9.4114 1.2568 -2.4071 18 6 9.5739 1.8737 -3.7970 19 6 9.1079 3.3318 -3.7680 20 6 9.3476 3.9631 -5.1421 21 8 10.7325 3.8581 -5.4780 22 6 11.2120 2.5149 -5.5667 23 6 11.0477 1.8256 -4.2094 24 6 8.7354 1.0895 -4.8075 25 6 7.2629 1.1378 -4.3959 26 6 3.8624 -0.3138 -1.3159 27 1 -0.4850 0.8400 -0.0004 28 1 3.8658 -2.9240 0.8805 29 1 6.2241 -2.9749 0.2013 30 1 7.0801 -1.3469 -1.4309 31 1 5.1016 1.2317 -2.9957 32 1 7.4387 -0.5184 -3.0295 33 1 7.6011 2.3410 -1.9737 34 1 7.8224 0.8634 -1.0062 35 1 9.7493 0.2207 -2.4278 36 1 10.0075 1.8190 -1.6883 37 1 8.0449 3.3699 -3.5300 38 1 9.6713 3.8793 -3.0123 39 1 9.0588 5.0138 -5.1147 40 1 8.7513 3.4415 -5.8907 41 1 12.2657 2.5226 -5.8453 42 1 10.6403 1.9737 -6.3208 43 1 11.6518 2.3418 -3.4633 44 1 11.3708 0.7875 -4.2865 45 1 9.0718 0.0530 -4.8321 46 1 8.8509 1.5324 -5.7967 47 1 6.6658 0.5778 -5.1155 48 1 6.9263 2.1743 -4.3727 49 1 3.2047 0.4299 -1.7412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334666223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:19 Heat of formation + Delta-G solvation = -48.793027 kcal Electronic energy + Delta-G solvation = -27034.687801 eV Core-core repulsion = 23538.796829 eV Total energy + Delta-G solvation = -3495.890971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.89508 -38.46844 -37.29792 -34.93148 -33.35780 -31.86697 -31.19879 -31.02882 -30.20115 -28.23897 -26.19769 -25.09191 -23.91464 -23.59637 -22.45850 -21.46604 -20.67685 -19.66770 -18.47842 -17.32250 -16.74694 -16.27405 -16.12243 -15.69332 -15.08761 -14.85690 -14.72323 -14.61580 -14.49231 -13.96688 -13.71040 -13.36005 -13.03930 -12.77912 -12.45490 -12.40152 -12.28346 -12.18981 -12.05451 -11.86055 -11.73591 -11.55228 -11.32740 -11.17777 -10.77847 -10.73781 -10.58692 -10.48882 -10.33382 -10.20549 -10.15368 -9.72628 -9.65985 -9.51756 -9.15433 -8.91125 -7.52531 -6.87593 -6.44768 -4.42734 2.76116 2.88781 3.15092 3.29609 3.39392 3.62967 3.98105 4.05793 4.36120 4.39488 4.52264 4.62118 4.74814 4.82656 4.91784 4.96219 5.10415 5.13674 5.18287 5.33389 5.39473 5.42451 5.47400 5.49185 5.52427 5.56553 5.65023 5.67264 5.71708 5.86180 5.95978 5.97834 6.04328 6.06132 6.09900 6.20406 6.31823 6.36471 6.48397 6.67176 6.79035 6.88319 6.94184 7.14165 7.23060 7.56148 7.80685 7.84755 8.07045 8.33029 8.46207 8.53946 8.83889 8.91877 10.15582 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.003221 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.583549 B = 8689.931314 C = 9407.074124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.085 3.915 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.450 4.450 8 H 0.089 0.911 9 C 0.124 3.876 10 C -0.246 4.246 11 C -0.054 4.054 12 C -0.303 4.303 13 C 0.243 3.757 14 N -0.758 5.758 15 C 0.162 3.838 16 C -0.136 4.136 17 C -0.103 4.103 18 C -0.058 4.058 19 C -0.148 4.148 20 C 0.059 3.941 21 O -0.385 6.385 22 C 0.059 3.941 23 C -0.145 4.145 24 C -0.108 4.108 25 C -0.128 4.128 26 C -0.303 4.303 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.388 0.612 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.276 6.714 -9.943 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.133 4.133 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.168 1.168 7 C -0.479 4.479 8 H 0.107 0.893 9 C 0.121 3.879 10 C -0.266 4.266 11 C -0.073 4.073 12 C -0.326 4.326 13 C 0.143 3.857 14 N -0.388 5.388 15 C 0.056 3.944 16 C -0.175 4.175 17 C -0.141 4.141 18 C -0.058 4.058 19 C -0.185 4.185 20 C -0.018 4.018 21 O -0.304 6.304 22 C -0.018 4.018 23 C -0.183 4.183 24 C -0.146 4.146 25 C -0.166 4.166 26 C -0.327 4.327 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.221 0.779 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.287 6.890 -9.963 22.775 hybrid contribution -0.259 0.755 -0.022 0.799 sum 19.027 7.645 -9.985 22.808 Atomic orbital electron populations 1.69714 1.08106 1.30013 1.36111 1.26145 0.94637 1.01734 0.90791 0.86210 0.81249 0.79647 0.78341 1.20205 1.22389 1.16805 1.19479 0.93293 0.95975 1.39191 0.89295 1.17459 0.92604 0.89766 0.88101 1.20878 0.93349 1.05517 1.06892 1.20406 0.95104 0.96231 0.95583 1.19915 0.97949 1.04217 1.10478 1.17500 0.92161 0.88143 0.87855 1.44616 1.08570 1.36770 1.48872 1.20666 0.82361 0.99289 0.92077 1.22095 0.94054 1.01030 1.00363 1.21527 0.96846 1.00717 0.95019 1.20538 0.94259 0.94945 0.96027 1.22327 1.02683 0.95473 0.98066 1.22630 0.82509 1.01225 0.95429 1.87910 1.25467 1.26391 1.90630 1.22608 0.99641 0.83283 0.96246 1.22241 0.96478 1.01378 0.98167 1.21620 0.94501 1.00350 0.98117 1.21833 0.96416 1.01407 0.96939 1.20445 0.93802 1.08982 1.09450 0.90694 0.88660 0.89110 0.88969 0.77915 0.90679 0.91959 0.91118 0.91800 0.92020 0.90068 0.91196 0.89178 0.92975 0.89207 0.93022 0.91065 0.90832 0.91523 0.91735 0.91433 0.91604 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.26 13.93 55.55 0.77 -21.48 16 2 C 0.08 2.28 5.40 -17.35 -0.09 2.19 16 3 Si 0.92 21.53 24.52 -169.99 -4.17 17.36 16 4 H -0.28 -6.22 6.71 56.52 0.38 -5.84 16 5 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.95 6.87 56.52 0.39 -5.56 16 7 C -0.45 -12.52 9.57 -37.74 -0.36 -12.88 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.12 3.24 5.10 -106.85 -0.54 2.69 16 10 C -0.25 -5.91 9.79 -38.83 -0.38 -6.29 16 11 C -0.05 -1.17 10.02 -39.69 -0.40 -1.56 16 12 C -0.30 -6.30 8.85 -39.08 -0.35 -6.64 16 13 C 0.24 5.21 6.63 -83.86 -0.56 4.65 16 14 N -0.76 -13.03 5.25 -52.22 -0.27 -13.30 16 15 C 0.16 2.19 2.14 -67.93 -0.15 2.05 16 16 C -0.14 -1.73 5.16 -26.73 -0.14 -1.86 16 17 C -0.10 -1.04 4.73 -26.77 -0.13 -1.16 16 18 C -0.06 -0.51 0.51 -154.46 -0.08 -0.59 16 19 C -0.15 -1.34 4.22 -26.62 -0.11 -1.45 16 20 C 0.06 0.51 6.57 37.21 0.24 0.76 16 21 O -0.39 -3.91 10.76 -35.23 -0.38 -4.29 16 22 C 0.06 0.47 6.57 37.21 0.24 0.71 16 23 C -0.14 -1.15 4.92 -26.61 -0.13 -1.28 16 24 C -0.11 -0.97 4.17 -26.78 -0.11 -1.08 16 25 C -0.13 -1.37 5.12 -26.74 -0.14 -1.51 16 26 C -0.30 -7.39 7.02 -38.68 -0.27 -7.66 16 27 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 28 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.71 6.07 -52.49 -0.32 1.39 16 31 H 0.39 6.37 8.61 -40.82 -0.35 6.02 16 32 H 0.08 1.10 6.47 -51.93 -0.34 0.76 16 33 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 34 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.77 4.86 -51.93 -0.25 0.52 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.43 6.60 -51.93 -0.34 0.09 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.38 6.60 -51.93 -0.34 0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.53 5.00 -51.93 -0.26 0.27 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 49 H 0.10 2.38 4.74 -52.48 -0.25 2.13 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -28.70 356.93 -9.88 -38.58 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.77 Total: 8.67 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -3.44 Total: -30.91 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.50 Total: -34.78 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.38 Total: -4.29 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.17 Total: 17.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.70 -9.88 -38.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334666223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.211 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds