Wall clock time and date at job start Tue Mar 31 2020 12:24:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30829 * 1
3 3 Si 1.86801 * 120.00020 * 2 1
4 4 H 1.48496 * 109.47031 * 275.40489 * 3 2 1
5 5 H 1.48499 * 109.47043 * 35.40570 * 3 2 1
6 6 H 1.48494 * 109.46998 * 155.40828 * 3 2 1
7 7 C 1.39931 * 119.99876 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00675 * 341.79584 * 7 2 1
9 9 C 1.41409 * 119.99833 * 161.79987 * 7 2 1
10 10 C 1.40783 * 120.20753 * 150.26238 * 9 7 2
11 11 C 1.37650 * 119.89562 * 179.72156 * 10 9 7
12 12 C 1.38528 * 120.32363 * 359.97438 * 11 10 9
13 13 C 1.39296 * 120.42325 * 0.02562 * 12 11 10
14 14 N 1.39677 * 119.94942 * 179.97438 * 13 12 11
15 15 C 1.46502 * 120.00326 * 0.02562 * 14 13 12
16 16 C 1.53000 * 109.47232 * 274.99613 * 15 14 13
17 17 C 1.53005 * 109.47185 * 179.97438 * 16 15 14
18 18 C 1.52925 * 109.49699 * 59.89692 * 17 16 15
19 19 C 1.53109 * 109.54766 * 60.33971 * 18 17 16
20 20 C 1.53111 * 109.14779 * 176.85150 * 19 18 17
21 21 O 1.42895 * 109.41388 * 302.47915 * 20 19 18
22 22 C 1.42902 * 114.13308 * 61.15437 * 21 20 19
23 23 C 1.53109 * 109.39919 * 298.83178 * 22 21 20
24 24 C 1.52940 * 109.59932 * 300.16616 * 18 17 16
25 25 C 1.53007 * 109.47085 * 154.99854 * 15 14 13
26 26 C 1.38316 * 120.09353 * 359.97438 * 13 12 11
27 27 H 0.96996 * 120.00388 * 0.02562 * 1 2 3
28 28 H 1.08007 * 120.05474 * 359.69808 * 10 9 7
29 29 H 1.07996 * 119.83859 * 180.02562 * 11 10 9
30 30 H 1.08000 * 119.78528 * 180.02562 * 12 11 10
31 31 H 0.97000 * 120.00115 * 179.97438 * 14 13 12
32 32 H 1.08998 * 109.46629 * 35.00183 * 15 14 13
33 33 H 1.08998 * 109.47352 * 299.96153 * 16 15 14
34 34 H 1.09007 * 109.46670 * 59.95852 * 16 15 14
35 35 H 1.08998 * 109.47083 * 299.88454 * 17 16 15
36 36 H 1.09006 * 109.46633 * 179.89810 * 17 16 15
37 37 H 1.08998 * 109.52489 * 296.74986 * 19 18 17
38 38 H 1.08996 * 109.52069 * 56.95426 * 19 18 17
39 39 H 1.09000 * 109.47630 * 182.49933 * 20 19 18
40 40 H 1.08996 * 109.47940 * 62.46483 * 20 19 18
41 41 H 1.09000 * 109.48432 * 178.85340 * 22 21 20
42 42 H 1.09004 * 109.48748 * 58.80891 * 22 21 20
43 43 H 1.09001 * 109.52272 * 297.65498 * 23 22 21
44 44 H 1.08997 * 109.52604 * 177.45771 * 23 22 21
45 45 H 1.09000 * 109.46941 * 299.84973 * 24 18 17
46 46 H 1.08997 * 109.46654 * 179.86399 * 24 18 17
47 47 H 1.08998 * 109.47466 * 300.05455 * 25 15 14
48 48 H 1.09000 * 109.47190 * 60.06174 * 25 15 14
49 49 H 1.08003 * 120.15822 * 180.02562 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 2.3756 2.1123 -1.3938
5 1 1.5015 2.6170 0.8111
6 1 3.5923 1.4099 0.5826
7 6 2.0079 -1.2119 -0.0005
8 1 1.5085 -2.1240 0.2912
9 6 3.3689 -1.2423 -0.3831
10 6 4.2368 -2.2069 0.1632
11 6 5.5592 -2.2343 -0.2180
12 6 6.0411 -1.3172 -1.1377
13 6 5.1942 -0.3571 -1.6866
14 7 5.6908 0.5631 -2.6127
15 6 7.1011 0.5177 -3.0065
16 6 7.9383 1.3047 -1.9962
17 6 9.4114 1.2568 -2.4071
18 6 9.5739 1.8737 -3.7970
19 6 9.1079 3.3318 -3.7680
20 6 9.3476 3.9631 -5.1421
21 8 10.7325 3.8581 -5.4780
22 6 11.2120 2.5149 -5.5667
23 6 11.0477 1.8256 -4.2094
24 6 8.7354 1.0895 -4.8075
25 6 7.2629 1.1378 -4.3959
26 6 3.8624 -0.3138 -1.3159
27 1 -0.4850 0.8400 -0.0004
28 1 3.8658 -2.9240 0.8805
29 1 6.2241 -2.9749 0.2013
30 1 7.0801 -1.3469 -1.4309
31 1 5.1016 1.2317 -2.9957
32 1 7.4387 -0.5184 -3.0295
33 1 7.6011 2.3410 -1.9737
34 1 7.8224 0.8634 -1.0062
35 1 9.7493 0.2207 -2.4278
36 1 10.0075 1.8190 -1.6883
37 1 8.0449 3.3699 -3.5300
38 1 9.6713 3.8793 -3.0123
39 1 9.0588 5.0138 -5.1147
40 1 8.7513 3.4415 -5.8907
41 1 12.2657 2.5226 -5.8453
42 1 10.6403 1.9737 -6.3208
43 1 11.6518 2.3418 -3.4633
44 1 11.3708 0.7875 -4.2865
45 1 9.0718 0.0530 -4.8321
46 1 8.8509 1.5324 -5.7967
47 1 6.6658 0.5778 -5.1155
48 1 6.9263 2.1743 -4.3727
49 1 3.2047 0.4299 -1.7412
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000334666223.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:24:18
Heat of formation + Delta-G solvation = -64.821995 kcal
Electronic energy + Delta-G solvation = -27035.382869 eV
Core-core repulsion = 23538.796829 eV
Total energy + Delta-G solvation = -3496.586040 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.67067 -39.93306 -38.44219 -36.27701 -35.17535 -32.92690 -32.15331 -31.94788
-31.81411 -29.58371 -27.34735 -26.92384 -24.60374 -24.43497 -23.58986 -22.96202
-21.90615 -21.16985 -19.29138 -19.19321 -17.92297 -17.35401 -16.96289 -16.90714
-16.48603 -16.38649 -15.72616 -15.57793 -15.28501 -15.16313 -14.96996 -14.70201
-14.62517 -14.15984 -13.89026 -13.69498 -13.49625 -13.19708 -13.06060 -12.89878
-12.77465 -12.64064 -12.52547 -12.44666 -12.20267 -12.10395 -11.96537 -11.63888
-11.59548 -11.41214 -11.28348 -11.06238 -10.94959 -10.89204 -10.54409 -10.20826
-9.41083 -8.88173 -8.08006 -6.49180 0.89945 1.06750 1.24035 1.44339
1.49547 2.14210 2.63703 2.71328 3.02432 3.59759 3.62684 3.65964
3.78278 3.98448 4.12163 4.16239 4.27347 4.30939 4.34916 4.39077
4.42205 4.50944 4.57737 4.62846 4.65879 4.74442 4.79480 4.82562
4.83938 4.86920 4.94297 4.97051 5.04580 5.08267 5.12343 5.15501
5.21886 5.23390 5.28117 5.32262 5.37011 5.46431 5.53642 5.57305
5.75609 5.96522 6.01972 6.21544 6.32282 6.35005 6.68909 6.88037
6.90841 7.08519 8.21110
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.022565 B = 0.003221 C = 0.002976
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1240.583549 B = 8689.931314 C = 9407.074124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.856 5.856
2 C 0.048 3.952
3 Si 0.975 3.025
4 H -0.260 1.260
5 H -0.283 1.283
6 H -0.259 1.259
7 C -0.489 4.489
8 H 0.053 0.947
9 C 0.105 3.895
10 C -0.272 4.272
11 C -0.048 4.048
12 C -0.290 4.290
13 C 0.246 3.754
14 N -0.751 5.751
15 C 0.159 3.841
16 C -0.131 4.131
17 C -0.097 4.097
18 C -0.054 4.054
19 C -0.146 4.146
20 C 0.058 3.942
21 O -0.405 6.405
22 C 0.054 3.946
23 C -0.140 4.140
24 C -0.102 4.102
25 C -0.121 4.121
26 C -0.318 4.318
27 H 0.292 0.708
28 H 0.093 0.907
29 H 0.127 0.873
30 H 0.124 0.876
31 H 0.392 0.608
32 H 0.071 0.929
33 H 0.060 0.940
34 H 0.047 0.953
35 H 0.069 0.931
36 H 0.065 0.935
37 H 0.076 0.924
38 H 0.063 0.937
39 H 0.095 0.905
40 H 0.059 0.941
41 H 0.101 0.899
42 H 0.060 0.940
43 H 0.067 0.933
44 H 0.086 0.914
45 H 0.072 0.928
46 H 0.076 0.924
47 H 0.066 0.934
48 H 0.071 0.929
49 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.825 7.754 -11.638 26.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.483 5.483
2 C -0.166 4.166
3 Si 0.800 3.200
4 H -0.186 1.186
5 H -0.210 1.210
6 H -0.183 1.183
7 C -0.519 4.519
8 H 0.071 0.929
9 C 0.102 3.898
10 C -0.292 4.292
11 C -0.067 4.067
12 C -0.313 4.313
13 C 0.144 3.856
14 N -0.380 5.380
15 C 0.054 3.946
16 C -0.170 4.170
17 C -0.135 4.135
18 C -0.054 4.054
19 C -0.183 4.183
20 C -0.019 4.019
21 O -0.324 6.324
22 C -0.022 4.022
23 C -0.178 4.178
24 C -0.140 4.140
25 C -0.159 4.159
26 C -0.342 4.342
27 H 0.102 0.898
28 H 0.111 0.889
29 H 0.145 0.855
30 H 0.141 0.859
31 H 0.226 0.774
32 H 0.089 0.911
33 H 0.079 0.921
34 H 0.066 0.934
35 H 0.088 0.912
36 H 0.084 0.916
37 H 0.095 0.905
38 H 0.082 0.918
39 H 0.113 0.887
40 H 0.077 0.923
41 H 0.120 0.880
42 H 0.078 0.922
43 H 0.085 0.915
44 H 0.105 0.895
45 H 0.091 0.909
46 H 0.095 0.905
47 H 0.084 0.916
48 H 0.090 0.910
49 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 22.857 7.943 -11.688 26.872
hybrid contribution -1.144 0.351 0.436 1.273
sum 21.713 8.294 -11.252 25.824
Atomic orbital electron populations
1.69741 1.09142 1.31217 1.38159 1.26802 0.95269 1.04181 0.90301
0.85337 0.79224 0.76401 0.79058 1.18595 1.20964 1.18282 1.19480
0.94777 0.95443 1.42198 0.92879 1.17618 0.92191 0.91159 0.88857
1.21023 0.94640 1.05722 1.07856 1.20789 0.94327 0.96658 0.94879
1.20338 0.99251 1.02773 1.08897 1.17599 0.91256 0.88725 0.88017
1.44788 1.10322 1.35541 1.47335 1.20911 0.80090 0.99583 0.93985
1.22005 0.95744 1.00463 0.98785 1.21479 0.94815 1.01331 0.95868
1.20503 0.95101 0.94599 0.95228 1.22292 1.02227 0.95639 0.98180
1.22681 0.82202 1.01719 0.95265 1.87892 1.26047 1.27739 1.90721
1.22760 1.00516 0.82495 0.96413 1.22201 0.95445 1.02135 0.98030
1.21596 0.92931 1.00873 0.98622 1.21778 0.97881 1.01399 0.94870
1.20479 0.95245 1.08836 1.09678 0.89814 0.88906 0.85501 0.85867
0.77404 0.91081 0.92096 0.93392 0.91218 0.91643 0.90529 0.91816
0.88710 0.92316 0.88043 0.92216 0.91474 0.89544 0.90919 0.90516
0.91572 0.91036 0.89105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -48.75 13.93 21.82 0.30 -48.45 16
2 C 0.05 2.69 5.40 85.25 0.46 3.15 16
3 Si 0.98 45.18 24.52 68.60 1.68 46.86 16
4 H -0.26 -11.26 6.71 99.48 0.67 -10.60 16
5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
6 H -0.26 -12.43 6.87 99.48 0.68 -11.74 16
7 C -0.49 -28.77 9.57 23.46 0.22 -28.54 16
8 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16
9 C 0.10 5.60 5.10 -21.31 -0.11 5.49 16
10 C -0.27 -13.16 9.79 22.75 0.22 -12.94 16
11 C -0.05 -1.95 10.02 22.20 0.22 -1.73 16
12 C -0.29 -11.21 8.85 22.59 0.20 -11.01 16
13 C 0.25 10.10 6.63 38.16 0.25 10.36 16
14 N -0.75 -23.96 5.25 -319.11 -1.67 -25.64 16
15 C 0.16 3.80 2.14 44.99 0.10 3.90 16
16 C -0.13 -2.95 5.16 30.60 0.16 -2.79 16
17 C -0.10 -1.63 4.73 30.57 0.14 -1.49 16
18 C -0.05 -0.78 0.51 -52.15 -0.03 -0.80 16
19 C -0.15 -2.24 4.22 30.67 0.13 -2.11 16
20 C 0.06 0.86 6.57 72.02 0.47 1.33 16
21 O -0.40 -7.14 10.76 -148.98 -1.60 -8.75 16
22 C 0.05 0.69 6.57 72.02 0.47 1.16 16
23 C -0.14 -1.73 4.92 30.67 0.15 -1.58 16
24 C -0.10 -1.44 4.17 30.56 0.13 -1.31 16
25 C -0.12 -2.20 5.12 30.59 0.16 -2.04 16
26 C -0.32 -15.47 7.02 22.86 0.16 -15.31 16
27 H 0.29 14.91 8.30 -92.71 -0.77 14.15 16
28 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16
29 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16
30 H 0.12 4.02 6.07 -2.91 -0.02 4.00 16
31 H 0.39 11.97 8.61 -92.71 -0.80 11.18 16
32 H 0.07 1.80 6.47 -2.39 -0.02 1.78 16
33 H 0.06 1.39 6.52 -2.39 -0.02 1.38 16
34 H 0.05 1.30 7.69 -2.38 -0.02 1.29 16
35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16
37 H 0.08 1.25 4.86 -2.39 -0.01 1.23 16
38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
40 H 0.06 0.79 6.60 -2.39 -0.02 0.77 16
41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.06 0.66 6.60 -2.39 -0.02 0.65 16
43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16
45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
46 H 0.08 0.95 5.00 -2.39 -0.01 0.94 16
47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
48 H 0.07 1.24 6.38 -2.39 -0.02 1.23 16
49 H 0.09 4.45 4.74 -2.91 -0.01 4.44 16
Total: -1.00 -64.14 356.93 2.32 -61.82
By element:
Atomic # 1 Polarization: 30.34 SS G_CDS: 0.09 Total: 30.43 kcal
Atomic # 6 Polarization: -59.80 SS G_CDS: 3.52 Total: -56.28 kcal
Atomic # 7 Polarization: -72.71 SS G_CDS: -1.37 Total: -74.09 kcal
Atomic # 8 Polarization: -7.14 SS G_CDS: -1.60 Total: -8.75 kcal
Atomic # 14 Polarization: 45.18 SS G_CDS: 1.68 Total: 46.86 kcal
Total: -64.14 2.32 -61.82 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000334666223.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.003 kcal
(2) G-P(sol) polarization free energy of solvation -64.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.819 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds