Wall clock time and date at job start Tue Mar 31 2020 12:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47031 * 275.40489 * 3 2 1 5 5 H 1.48499 * 109.47043 * 35.40570 * 3 2 1 6 6 H 1.48494 * 109.46998 * 155.40828 * 3 2 1 7 7 C 1.39931 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00675 * 341.79584 * 7 2 1 9 9 C 1.41409 * 119.99833 * 161.79987 * 7 2 1 10 10 C 1.40783 * 120.20753 * 150.26238 * 9 7 2 11 11 C 1.37650 * 119.89562 * 179.72156 * 10 9 7 12 12 C 1.38528 * 120.32363 * 359.97438 * 11 10 9 13 13 C 1.39296 * 120.42325 * 0.02562 * 12 11 10 14 14 N 1.39677 * 119.94942 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00326 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.47232 * 274.99613 * 15 14 13 17 17 C 1.53005 * 109.47185 * 179.97438 * 16 15 14 18 18 C 1.52925 * 109.49699 * 59.89692 * 17 16 15 19 19 C 1.53109 * 109.54766 * 60.33971 * 18 17 16 20 20 C 1.53111 * 109.14779 * 176.85150 * 19 18 17 21 21 O 1.42895 * 109.41388 * 302.47915 * 20 19 18 22 22 C 1.42902 * 114.13308 * 61.15437 * 21 20 19 23 23 C 1.53109 * 109.39919 * 298.83178 * 22 21 20 24 24 C 1.52940 * 109.59932 * 300.16616 * 18 17 16 25 25 C 1.53007 * 109.47085 * 154.99854 * 15 14 13 26 26 C 1.38316 * 120.09353 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00388 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.05474 * 359.69808 * 10 9 7 29 29 H 1.07996 * 119.83859 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.78528 * 180.02562 * 12 11 10 31 31 H 0.97000 * 120.00115 * 179.97438 * 14 13 12 32 32 H 1.08998 * 109.46629 * 35.00183 * 15 14 13 33 33 H 1.08998 * 109.47352 * 299.96153 * 16 15 14 34 34 H 1.09007 * 109.46670 * 59.95852 * 16 15 14 35 35 H 1.08998 * 109.47083 * 299.88454 * 17 16 15 36 36 H 1.09006 * 109.46633 * 179.89810 * 17 16 15 37 37 H 1.08998 * 109.52489 * 296.74986 * 19 18 17 38 38 H 1.08996 * 109.52069 * 56.95426 * 19 18 17 39 39 H 1.09000 * 109.47630 * 182.49933 * 20 19 18 40 40 H 1.08996 * 109.47940 * 62.46483 * 20 19 18 41 41 H 1.09000 * 109.48432 * 178.85340 * 22 21 20 42 42 H 1.09004 * 109.48748 * 58.80891 * 22 21 20 43 43 H 1.09001 * 109.52272 * 297.65498 * 23 22 21 44 44 H 1.08997 * 109.52604 * 177.45771 * 23 22 21 45 45 H 1.09000 * 109.46941 * 299.84973 * 24 18 17 46 46 H 1.08997 * 109.46654 * 179.86399 * 24 18 17 47 47 H 1.08998 * 109.47466 * 300.05455 * 25 15 14 48 48 H 1.09000 * 109.47190 * 60.06174 * 25 15 14 49 49 H 1.08003 * 120.15822 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3756 2.1123 -1.3938 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2119 -0.0005 8 1 1.5085 -2.1240 0.2912 9 6 3.3689 -1.2423 -0.3831 10 6 4.2368 -2.2069 0.1632 11 6 5.5592 -2.2343 -0.2180 12 6 6.0411 -1.3172 -1.1377 13 6 5.1942 -0.3571 -1.6866 14 7 5.6908 0.5631 -2.6127 15 6 7.1011 0.5177 -3.0065 16 6 7.9383 1.3047 -1.9962 17 6 9.4114 1.2568 -2.4071 18 6 9.5739 1.8737 -3.7970 19 6 9.1079 3.3318 -3.7680 20 6 9.3476 3.9631 -5.1421 21 8 10.7325 3.8581 -5.4780 22 6 11.2120 2.5149 -5.5667 23 6 11.0477 1.8256 -4.2094 24 6 8.7354 1.0895 -4.8075 25 6 7.2629 1.1378 -4.3959 26 6 3.8624 -0.3138 -1.3159 27 1 -0.4850 0.8400 -0.0004 28 1 3.8658 -2.9240 0.8805 29 1 6.2241 -2.9749 0.2013 30 1 7.0801 -1.3469 -1.4309 31 1 5.1016 1.2317 -2.9957 32 1 7.4387 -0.5184 -3.0295 33 1 7.6011 2.3410 -1.9737 34 1 7.8224 0.8634 -1.0062 35 1 9.7493 0.2207 -2.4278 36 1 10.0075 1.8190 -1.6883 37 1 8.0449 3.3699 -3.5300 38 1 9.6713 3.8793 -3.0123 39 1 9.0588 5.0138 -5.1147 40 1 8.7513 3.4415 -5.8907 41 1 12.2657 2.5226 -5.8453 42 1 10.6403 1.9737 -6.3208 43 1 11.6518 2.3418 -3.4633 44 1 11.3708 0.7875 -4.2865 45 1 9.0718 0.0530 -4.8321 46 1 8.8509 1.5324 -5.7967 47 1 6.6658 0.5778 -5.1155 48 1 6.9263 2.1743 -4.3727 49 1 3.2047 0.4299 -1.7412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334666223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:18 Heat of formation + Delta-G solvation = -64.821995 kcal Electronic energy + Delta-G solvation = -27035.382869 eV Core-core repulsion = 23538.796829 eV Total energy + Delta-G solvation = -3496.586040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.67067 -39.93306 -38.44219 -36.27701 -35.17535 -32.92690 -32.15331 -31.94788 -31.81411 -29.58371 -27.34735 -26.92384 -24.60374 -24.43497 -23.58986 -22.96202 -21.90615 -21.16985 -19.29138 -19.19321 -17.92297 -17.35401 -16.96289 -16.90714 -16.48603 -16.38649 -15.72616 -15.57793 -15.28501 -15.16313 -14.96996 -14.70201 -14.62517 -14.15984 -13.89026 -13.69498 -13.49625 -13.19708 -13.06060 -12.89878 -12.77465 -12.64064 -12.52547 -12.44666 -12.20267 -12.10395 -11.96537 -11.63888 -11.59548 -11.41214 -11.28348 -11.06238 -10.94959 -10.89204 -10.54409 -10.20826 -9.41083 -8.88173 -8.08006 -6.49180 0.89945 1.06750 1.24035 1.44339 1.49547 2.14210 2.63703 2.71328 3.02432 3.59759 3.62684 3.65964 3.78278 3.98448 4.12163 4.16239 4.27347 4.30939 4.34916 4.39077 4.42205 4.50944 4.57737 4.62846 4.65879 4.74442 4.79480 4.82562 4.83938 4.86920 4.94297 4.97051 5.04580 5.08267 5.12343 5.15501 5.21886 5.23390 5.28117 5.32262 5.37011 5.46431 5.53642 5.57305 5.75609 5.96522 6.01972 6.21544 6.32282 6.35005 6.68909 6.88037 6.90841 7.08519 8.21110 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.003221 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.583549 B = 8689.931314 C = 9407.074124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.048 3.952 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.053 0.947 9 C 0.105 3.895 10 C -0.272 4.272 11 C -0.048 4.048 12 C -0.290 4.290 13 C 0.246 3.754 14 N -0.751 5.751 15 C 0.159 3.841 16 C -0.131 4.131 17 C -0.097 4.097 18 C -0.054 4.054 19 C -0.146 4.146 20 C 0.058 3.942 21 O -0.405 6.405 22 C 0.054 3.946 23 C -0.140 4.140 24 C -0.102 4.102 25 C -0.121 4.121 26 C -0.318 4.318 27 H 0.292 0.708 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.392 0.608 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.825 7.754 -11.638 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.166 4.166 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.519 4.519 8 H 0.071 0.929 9 C 0.102 3.898 10 C -0.292 4.292 11 C -0.067 4.067 12 C -0.313 4.313 13 C 0.144 3.856 14 N -0.380 5.380 15 C 0.054 3.946 16 C -0.170 4.170 17 C -0.135 4.135 18 C -0.054 4.054 19 C -0.183 4.183 20 C -0.019 4.019 21 O -0.324 6.324 22 C -0.022 4.022 23 C -0.178 4.178 24 C -0.140 4.140 25 C -0.159 4.159 26 C -0.342 4.342 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.226 0.774 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.857 7.943 -11.688 26.872 hybrid contribution -1.144 0.351 0.436 1.273 sum 21.713 8.294 -11.252 25.824 Atomic orbital electron populations 1.69741 1.09142 1.31217 1.38159 1.26802 0.95269 1.04181 0.90301 0.85337 0.79224 0.76401 0.79058 1.18595 1.20964 1.18282 1.19480 0.94777 0.95443 1.42198 0.92879 1.17618 0.92191 0.91159 0.88857 1.21023 0.94640 1.05722 1.07856 1.20789 0.94327 0.96658 0.94879 1.20338 0.99251 1.02773 1.08897 1.17599 0.91256 0.88725 0.88017 1.44788 1.10322 1.35541 1.47335 1.20911 0.80090 0.99583 0.93985 1.22005 0.95744 1.00463 0.98785 1.21479 0.94815 1.01331 0.95868 1.20503 0.95101 0.94599 0.95228 1.22292 1.02227 0.95639 0.98180 1.22681 0.82202 1.01719 0.95265 1.87892 1.26047 1.27739 1.90721 1.22760 1.00516 0.82495 0.96413 1.22201 0.95445 1.02135 0.98030 1.21596 0.92931 1.00873 0.98622 1.21778 0.97881 1.01399 0.94870 1.20479 0.95245 1.08836 1.09678 0.89814 0.88906 0.85501 0.85867 0.77404 0.91081 0.92096 0.93392 0.91218 0.91643 0.90529 0.91816 0.88710 0.92316 0.88043 0.92216 0.91474 0.89544 0.90919 0.90516 0.91572 0.91036 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.75 13.93 21.82 0.30 -48.45 16 2 C 0.05 2.69 5.40 85.25 0.46 3.15 16 3 Si 0.98 45.18 24.52 68.60 1.68 46.86 16 4 H -0.26 -11.26 6.71 99.48 0.67 -10.60 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -12.43 6.87 99.48 0.68 -11.74 16 7 C -0.49 -28.77 9.57 23.46 0.22 -28.54 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 9 C 0.10 5.60 5.10 -21.31 -0.11 5.49 16 10 C -0.27 -13.16 9.79 22.75 0.22 -12.94 16 11 C -0.05 -1.95 10.02 22.20 0.22 -1.73 16 12 C -0.29 -11.21 8.85 22.59 0.20 -11.01 16 13 C 0.25 10.10 6.63 38.16 0.25 10.36 16 14 N -0.75 -23.96 5.25 -319.11 -1.67 -25.64 16 15 C 0.16 3.80 2.14 44.99 0.10 3.90 16 16 C -0.13 -2.95 5.16 30.60 0.16 -2.79 16 17 C -0.10 -1.63 4.73 30.57 0.14 -1.49 16 18 C -0.05 -0.78 0.51 -52.15 -0.03 -0.80 16 19 C -0.15 -2.24 4.22 30.67 0.13 -2.11 16 20 C 0.06 0.86 6.57 72.02 0.47 1.33 16 21 O -0.40 -7.14 10.76 -148.98 -1.60 -8.75 16 22 C 0.05 0.69 6.57 72.02 0.47 1.16 16 23 C -0.14 -1.73 4.92 30.67 0.15 -1.58 16 24 C -0.10 -1.44 4.17 30.56 0.13 -1.31 16 25 C -0.12 -2.20 5.12 30.59 0.16 -2.04 16 26 C -0.32 -15.47 7.02 22.86 0.16 -15.31 16 27 H 0.29 14.91 8.30 -92.71 -0.77 14.15 16 28 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.12 4.02 6.07 -2.91 -0.02 4.00 16 31 H 0.39 11.97 8.61 -92.71 -0.80 11.18 16 32 H 0.07 1.80 6.47 -2.39 -0.02 1.78 16 33 H 0.06 1.39 6.52 -2.39 -0.02 1.38 16 34 H 0.05 1.30 7.69 -2.38 -0.02 1.29 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.08 1.25 4.86 -2.39 -0.01 1.23 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 0.79 6.60 -2.39 -0.02 0.77 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.66 6.60 -2.39 -0.02 0.65 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 0.95 5.00 -2.39 -0.01 0.94 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.24 6.38 -2.39 -0.02 1.23 16 49 H 0.09 4.45 4.74 -2.91 -0.01 4.44 16 Total: -1.00 -64.14 356.93 2.32 -61.82 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.09 Total: 30.43 kcal Atomic # 6 Polarization: -59.80 SS G_CDS: 3.52 Total: -56.28 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -1.37 Total: -74.09 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.60 Total: -8.75 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.68 Total: 46.86 kcal Total: -64.14 2.32 -61.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334666223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.003 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds