Wall clock time and date at job start Tue Mar 31 2020 12:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48501 * 109.46775 * 270.00170 * 3 2 1 5 5 H 1.48501 * 109.46873 * 29.99590 * 3 2 1 6 6 H 1.48490 * 109.47535 * 150.00351 * 3 2 1 7 7 C 1.37876 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99544 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47169 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47080 * 179.97438 * 10 9 7 12 12 C 1.35891 * 117.00135 * 180.02562 * 11 10 9 13 13 C 1.38761 * 120.05657 * 0.02562 * 12 11 10 14 14 C 1.38119 * 119.94269 * 179.97438 * 13 12 11 15 15 C 1.38291 * 120.05969 * 359.74250 * 14 13 12 16 16 C 1.38249 * 120.10732 * 0.51636 * 15 14 13 17 17 C 1.50704 * 119.97075 * 179.76224 * 16 15 14 18 18 N 1.46894 * 109.47075 * 269.72372 * 17 16 15 19 19 C 1.48192 * 110.99858 * 189.99810 * 18 17 16 20 20 C 1.52740 * 85.79089 * 223.20105 * 19 18 17 21 21 C 1.48200 * 111.00299 * 90.38345 * 18 17 16 22 22 C 1.53127 * 116.05662 * 141.06252 * 20 19 18 23 23 C 1.54157 * 106.24784 * 107.22337 * 22 20 19 24 24 C 1.54355 * 106.58922 * 359.15472 * 23 22 20 25 25 C 1.53750 * 115.67197 * 265.62318 * 20 19 18 26 26 C 1.38163 * 120.05573 * 359.48786 * 16 15 14 27 27 H 0.97004 * 120.00018 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47106 * 59.99787 * 9 7 2 29 29 H 1.09002 * 109.47074 * 300.00399 * 9 7 2 30 30 H 1.08997 * 109.46965 * 60.00441 * 10 9 7 31 31 H 1.08992 * 109.47463 * 300.00034 * 10 9 7 32 32 H 1.07991 * 120.02274 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.97082 * 180.02562 * 14 13 12 34 34 H 1.07993 * 119.94668 * 180.27138 * 15 14 13 35 35 H 1.09001 * 109.47133 * 149.72126 * 17 16 15 36 36 H 1.09000 * 109.46708 * 29.72009 * 17 16 15 37 37 H 1.09006 * 113.82031 * 108.98702 * 19 18 17 38 38 H 1.08999 * 113.93232 * 337.43391 * 19 18 17 39 39 H 1.08997 * 113.81771 * 22.57750 * 21 18 17 40 40 H 1.09002 * 113.81936 * 251.01617 * 21 18 17 41 41 H 1.08998 * 110.10128 * 348.02909 * 22 20 19 42 42 H 1.08998 * 110.10125 * 226.41920 * 22 20 19 43 43 H 1.08998 * 110.03127 * 118.43737 * 23 22 20 44 44 H 1.09001 * 110.03404 * 239.86867 * 23 22 20 45 45 H 1.08996 * 110.45197 * 142.12271 * 24 23 22 46 46 H 1.09002 * 110.45071 * 264.67841 * 24 23 22 47 47 H 1.09001 * 110.77860 * 148.47537 * 25 20 19 48 48 H 1.09000 * 110.94211 * 25.12132 * 25 20 19 49 49 H 1.07999 * 120.02782 * 180.27983 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 8 1.5306 -4.8997 0.0032 12 6 2.2707 -6.0394 0.0037 13 6 3.6565 -5.9682 0.0032 14 6 4.4064 -7.1280 0.0043 15 6 3.7774 -8.3596 0.0113 16 6 2.3968 -8.4332 0.0065 17 6 1.7146 -9.7770 0.0087 18 7 1.4921 -10.2155 -1.3755 19 6 0.6162 -11.4100 -1.4198 20 6 1.5927 -11.9482 -2.4638 21 6 2.6413 -11.0081 -1.8728 22 6 1.9074 -13.4445 -2.3822 23 6 1.1833 -14.1031 -3.5732 24 6 0.4395 -12.9730 -4.3163 25 6 1.2121 -11.6849 -3.9300 26 6 1.6421 -7.2759 0.0053 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5575 -0.8880 29 1 0.6245 -2.5563 0.8919 30 1 2.8724 -3.6040 0.8909 31 1 2.8711 -3.6048 -0.8890 32 1 4.1481 -5.0066 0.0027 33 1 5.4850 -7.0731 0.0043 34 1 4.3655 -9.2653 0.0166 35 1 0.7569 -9.6973 0.5230 36 1 2.3440 -10.5031 0.5231 37 1 -0.3812 -11.2103 -1.8116 38 1 0.6028 -11.9832 -0.4928 39 1 3.2405 -11.4587 -1.0816 40 1 3.2414 -10.4913 -2.6218 41 1 1.5347 -13.8551 -1.4438 42 1 2.9824 -13.6061 -2.4616 43 1 1.9085 -14.5728 -4.2376 44 1 0.4708 -14.8453 -3.2130 45 1 0.4812 -13.1338 -5.3936 46 1 -0.5953 -12.9121 -3.9791 47 1 2.1037 -11.5693 -4.5462 48 1 0.5694 -10.8085 -4.0144 49 1 0.5637 -7.3340 0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362325730.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:33 Heat of formation + Delta-G solvation = -2.406165 kcal Electronic energy + Delta-G solvation = -25224.419497 eV Core-core repulsion = 21730.540010 eV Total energy + Delta-G solvation = -3493.879486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05264 -39.64529 -37.42211 -36.21970 -33.36987 -32.23205 -30.78249 -29.28596 -29.13585 -28.75886 -26.48551 -25.80816 -24.86893 -22.69384 -22.05766 -21.52108 -20.74824 -20.03477 -18.69019 -17.56274 -16.29187 -16.15170 -16.06674 -15.80263 -15.58778 -15.26449 -15.15463 -14.65779 -14.51079 -14.32732 -13.72333 -13.64100 -13.08176 -12.89682 -12.71691 -12.62029 -12.44821 -12.29840 -11.64703 -11.56483 -11.46998 -11.39003 -11.36018 -11.16060 -11.09740 -10.87740 -10.80797 -10.73189 -10.60682 -10.58032 -10.38047 -9.82731 -9.63817 -9.28253 -8.99172 -8.62119 -8.43404 -7.78975 -6.08865 -4.13418 1.51062 1.73472 3.28354 3.34157 3.37103 3.60370 3.86747 4.00802 4.07424 4.14862 4.41809 4.43650 4.72650 4.80477 4.83758 4.86763 5.00705 5.05971 5.12231 5.15905 5.27451 5.29480 5.31825 5.36520 5.41617 5.44419 5.49398 5.53296 5.56582 5.61187 5.71849 5.73628 5.81148 5.87993 5.93366 5.96652 6.05157 6.06603 6.07230 6.11299 6.26825 6.59325 6.61188 6.74837 6.77016 6.82077 7.04646 7.53231 7.66402 7.83744 8.10391 8.25826 8.92121 9.50707 11.02711 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.002010 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.439209 B =13927.942251 C =14437.356508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.145 3.855 13 C -0.213 4.213 14 C -0.081 4.081 15 C -0.164 4.164 16 C -0.040 4.040 17 C 0.063 3.937 18 N -0.468 5.468 19 C 0.014 3.986 20 C -0.090 4.090 21 C 0.015 3.985 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.096 4.096 26 C -0.143 4.143 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -29.406 -4.081 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.098 3.902 13 C -0.232 4.232 14 C -0.099 4.099 15 C -0.183 4.183 16 C -0.040 4.040 17 C -0.065 4.065 18 N -0.190 5.190 19 C -0.114 4.114 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.163 4.163 25 C -0.133 4.133 26 C -0.162 4.162 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.325 -28.634 -4.388 29.289 hybrid contribution 1.002 0.432 0.594 1.242 sum 5.327 -28.202 -3.794 28.950 Atomic orbital electron populations 1.69978 1.06092 1.26942 1.49721 1.24994 0.94916 0.99383 0.94946 0.86482 0.79723 0.82939 0.78208 1.20501 1.21050 1.19784 1.20975 0.93039 0.90230 1.52188 0.92381 1.19124 0.94189 0.89028 0.98874 1.23315 0.97056 0.80881 0.99597 1.86171 1.36544 1.13194 1.86991 1.19180 0.90087 0.87492 0.93398 1.21367 0.93236 0.99762 1.08787 1.20828 0.99266 0.91930 0.97848 1.20717 0.93731 0.97246 1.06633 1.19269 0.93071 0.93490 0.98206 1.21580 1.00224 0.93730 0.90989 1.68623 1.07046 1.24861 1.18426 1.23875 0.98519 0.91208 0.97835 1.22304 0.96283 0.94233 0.96203 1.23924 0.94122 0.93744 0.99581 1.22036 1.00528 0.93996 0.98573 1.22170 0.99130 0.97878 0.96939 1.22412 0.99317 0.94695 0.99856 1.22119 1.00244 0.97847 0.93136 1.20227 1.00161 0.89204 1.06617 0.92719 0.95386 0.95399 0.93199 0.93166 0.85341 0.86331 0.87011 0.89997 0.93022 0.89204 0.91296 0.91278 0.89292 0.91780 0.91466 0.91989 0.92024 0.91730 0.91641 0.91182 0.90586 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.45 4.68 37.16 0.17 1.62 16 11 O -0.32 -6.76 10.14 -19.40 -0.20 -6.96 16 12 C 0.15 2.66 6.69 -39.21 -0.26 2.39 16 13 C -0.21 -3.47 9.04 -39.43 -0.36 -3.83 16 14 C -0.08 -1.10 10.04 -39.61 -0.40 -1.50 16 15 C -0.16 -2.09 9.70 -39.56 -0.38 -2.47 16 16 C -0.04 -0.53 5.43 -104.64 -0.57 -1.10 16 17 C 0.06 0.66 4.93 -4.98 -0.02 0.64 16 18 N -0.47 -4.86 6.14 -245.90 -1.51 -6.37 16 19 C 0.01 0.12 7.18 -3.25 -0.02 0.09 16 20 C -0.09 -0.67 0.96 -154.47 -0.15 -0.82 16 21 C 0.01 0.13 7.25 -3.25 -0.02 0.11 16 22 C -0.11 -0.70 6.27 -26.06 -0.16 -0.87 16 23 C -0.12 -0.72 6.82 -25.42 -0.17 -0.90 16 24 C -0.13 -0.80 6.84 -24.91 -0.17 -0.98 16 25 C -0.10 -0.74 6.21 -25.23 -0.16 -0.89 16 26 C -0.14 -2.30 9.64 -39.43 -0.38 -2.68 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 31 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 32 H 0.13 2.06 6.30 -52.49 -0.33 1.73 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.08 0.83 8.02 -51.93 -0.42 0.42 16 36 H 0.05 0.47 7.33 -51.93 -0.38 0.09 16 37 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.07 0.49 7.76 -51.93 -0.40 0.09 16 39 H 0.07 0.53 7.48 -51.93 -0.39 0.14 16 40 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 41 H 0.06 0.37 7.84 -51.93 -0.41 -0.03 16 42 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 49 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -30.58 391.67 -12.28 -42.86 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.57 Total: -1.69 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -3.62 Total: -24.22 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: -0.77 Total: -32.34 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.20 Total: -6.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.58 -12.28 -42.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362325730.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.455 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds