Wall clock time and date at job start Tue Mar 31 2020 12:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48501 * 109.46775 * 270.00170 * 3 2 1 5 5 H 1.48501 * 109.46873 * 29.99590 * 3 2 1 6 6 H 1.48490 * 109.47535 * 150.00351 * 3 2 1 7 7 C 1.37876 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99544 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47169 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47080 * 179.97438 * 10 9 7 12 12 C 1.35891 * 117.00135 * 180.02562 * 11 10 9 13 13 C 1.38761 * 120.05657 * 0.02562 * 12 11 10 14 14 C 1.38119 * 119.94269 * 179.97438 * 13 12 11 15 15 C 1.38291 * 120.05969 * 359.74250 * 14 13 12 16 16 C 1.38249 * 120.10732 * 0.51636 * 15 14 13 17 17 C 1.50704 * 119.97075 * 179.76224 * 16 15 14 18 18 N 1.46894 * 109.47075 * 269.72372 * 17 16 15 19 19 C 1.48192 * 110.99858 * 189.99810 * 18 17 16 20 20 C 1.52740 * 85.79089 * 223.20105 * 19 18 17 21 21 C 1.48200 * 111.00299 * 90.38345 * 18 17 16 22 22 C 1.53127 * 116.05662 * 141.06252 * 20 19 18 23 23 C 1.54157 * 106.24784 * 107.22337 * 22 20 19 24 24 C 1.54355 * 106.58922 * 359.15472 * 23 22 20 25 25 C 1.53750 * 115.67197 * 265.62318 * 20 19 18 26 26 C 1.38163 * 120.05573 * 359.48786 * 16 15 14 27 27 H 0.97004 * 120.00018 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47106 * 59.99787 * 9 7 2 29 29 H 1.09002 * 109.47074 * 300.00399 * 9 7 2 30 30 H 1.08997 * 109.46965 * 60.00441 * 10 9 7 31 31 H 1.08992 * 109.47463 * 300.00034 * 10 9 7 32 32 H 1.07991 * 120.02274 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.97082 * 180.02562 * 14 13 12 34 34 H 1.07993 * 119.94668 * 180.27138 * 15 14 13 35 35 H 1.09001 * 109.47133 * 149.72126 * 17 16 15 36 36 H 1.09000 * 109.46708 * 29.72009 * 17 16 15 37 37 H 1.09006 * 113.82031 * 108.98702 * 19 18 17 38 38 H 1.08999 * 113.93232 * 337.43391 * 19 18 17 39 39 H 1.08997 * 113.81771 * 22.57750 * 21 18 17 40 40 H 1.09002 * 113.81936 * 251.01617 * 21 18 17 41 41 H 1.08998 * 110.10128 * 348.02909 * 22 20 19 42 42 H 1.08998 * 110.10125 * 226.41920 * 22 20 19 43 43 H 1.08998 * 110.03127 * 118.43737 * 23 22 20 44 44 H 1.09001 * 110.03404 * 239.86867 * 23 22 20 45 45 H 1.08996 * 110.45197 * 142.12271 * 24 23 22 46 46 H 1.09002 * 110.45071 * 264.67841 * 24 23 22 47 47 H 1.09001 * 110.77860 * 148.47537 * 25 20 19 48 48 H 1.09000 * 110.94211 * 25.12132 * 25 20 19 49 49 H 1.07999 * 120.02782 * 180.27983 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 8 1.5306 -4.8997 0.0032 12 6 2.2707 -6.0394 0.0037 13 6 3.6565 -5.9682 0.0032 14 6 4.4064 -7.1280 0.0043 15 6 3.7774 -8.3596 0.0113 16 6 2.3968 -8.4332 0.0065 17 6 1.7146 -9.7770 0.0087 18 7 1.4921 -10.2155 -1.3755 19 6 0.6162 -11.4100 -1.4198 20 6 1.5927 -11.9482 -2.4638 21 6 2.6413 -11.0081 -1.8728 22 6 1.9074 -13.4445 -2.3822 23 6 1.1833 -14.1031 -3.5732 24 6 0.4395 -12.9730 -4.3163 25 6 1.2121 -11.6849 -3.9300 26 6 1.6421 -7.2759 0.0053 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5575 -0.8880 29 1 0.6245 -2.5563 0.8919 30 1 2.8724 -3.6040 0.8909 31 1 2.8711 -3.6048 -0.8890 32 1 4.1481 -5.0066 0.0027 33 1 5.4850 -7.0731 0.0043 34 1 4.3655 -9.2653 0.0166 35 1 0.7569 -9.6973 0.5230 36 1 2.3440 -10.5031 0.5231 37 1 -0.3812 -11.2103 -1.8116 38 1 0.6028 -11.9832 -0.4928 39 1 3.2405 -11.4587 -1.0816 40 1 3.2414 -10.4913 -2.6218 41 1 1.5347 -13.8551 -1.4438 42 1 2.9824 -13.6061 -2.4616 43 1 1.9085 -14.5728 -4.2376 44 1 0.4708 -14.8453 -3.2130 45 1 0.4812 -13.1338 -5.3936 46 1 -0.5953 -12.9121 -3.9791 47 1 2.1037 -11.5693 -4.5462 48 1 0.5694 -10.8085 -4.0144 49 1 0.5637 -7.3340 0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362325730.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:32 Heat of formation + Delta-G solvation = -19.155541 kcal Electronic energy + Delta-G solvation = -25225.145804 eV Core-core repulsion = 21730.540010 eV Total energy + Delta-G solvation = -3494.605794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74237 -40.94227 -38.68846 -36.94621 -35.48392 -33.20384 -32.58838 -30.71746 -29.71870 -29.59386 -27.17936 -27.09133 -26.33597 -23.86938 -23.30610 -22.79488 -21.61710 -21.07887 -19.36298 -19.02676 -18.13946 -17.06927 -16.97506 -16.87896 -16.73699 -16.65610 -16.49220 -15.95421 -15.52634 -15.04890 -14.65291 -14.41029 -14.34477 -14.29665 -14.19769 -13.82488 -13.47860 -13.23296 -13.04681 -13.02398 -12.63941 -12.57701 -12.45458 -12.26106 -12.04711 -11.91748 -11.82532 -11.74240 -11.59697 -11.55932 -11.40396 -11.33245 -11.23765 -11.13926 -10.63531 -9.80784 -9.64075 -9.09681 -8.27787 -6.41855 0.36099 0.53563 1.39905 1.42559 1.53733 2.26367 2.50409 2.71991 3.06359 3.12905 3.41780 3.58122 3.80052 3.88703 3.93188 4.06766 4.18133 4.21246 4.24717 4.25344 4.33286 4.37518 4.46020 4.46423 4.55024 4.61391 4.66072 4.71437 4.76625 4.77871 4.80509 4.87591 4.91492 5.05055 5.09259 5.14107 5.20042 5.23215 5.29812 5.36360 5.38516 5.43820 5.43953 5.44492 5.51714 5.54876 5.65408 5.68729 5.90305 6.06097 6.13875 6.57073 6.72698 7.28221 8.85420 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.002010 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.439209 B =13927.942251 C =14437.356508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.344 6.344 12 C 0.106 3.894 13 C -0.225 4.225 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.035 4.035 17 C 0.066 3.934 18 N -0.496 5.496 19 C 0.017 3.983 20 C -0.084 4.084 21 C 0.016 3.984 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.099 4.099 26 C -0.158 4.158 27 H 0.267 0.733 28 H -0.003 1.003 29 H -0.002 1.002 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -31.427 -3.888 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.061 3.939 13 C -0.244 4.244 14 C -0.095 4.095 15 C -0.171 4.171 16 C -0.036 4.036 17 C -0.062 4.062 18 N -0.218 5.218 19 C -0.112 4.112 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.136 4.136 26 C -0.177 4.177 27 H 0.076 0.924 28 H 0.015 0.985 29 H 0.017 0.983 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.936 -30.689 -4.198 31.742 hybrid contribution 0.163 0.902 0.504 1.046 sum 7.100 -29.787 -3.694 30.844 Atomic orbital electron populations 1.70126 1.08076 1.28253 1.50534 1.26075 0.95867 1.03780 0.94117 0.85253 0.78551 0.77386 0.78676 1.19529 1.20565 1.18279 1.21392 0.93824 0.90971 1.52244 0.91095 1.18969 0.94554 0.91456 0.95939 1.22846 0.95388 0.80264 1.00385 1.86080 1.37573 1.13822 1.88340 1.19513 0.91171 0.86768 0.96452 1.21480 0.92471 1.00974 1.09469 1.21217 1.00799 0.91176 0.96303 1.21158 0.93547 0.98298 1.04048 1.19634 0.93674 0.93832 0.96467 1.21593 1.00425 0.92543 0.91627 1.68591 1.08475 1.26459 1.18265 1.23908 0.98008 0.90486 0.98750 1.22233 0.95562 0.95136 0.95540 1.23975 0.93919 0.93551 0.99816 1.22017 1.01004 0.92656 0.99032 1.22172 0.99297 0.97627 0.96877 1.22401 0.99130 0.94334 1.00278 1.22109 1.00024 0.97760 0.93757 1.20377 1.00211 0.89606 1.07527 0.92418 0.98470 0.98327 0.92202 0.92363 0.85594 0.83105 0.83442 0.90129 0.90593 0.90021 0.89709 0.89536 0.90292 0.90985 0.90807 0.91457 0.91370 0.91359 0.91856 0.91260 0.92536 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.98 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.32 16 8 H 0.07 3.82 7.74 -2.90 -0.02 3.79 16 9 C 0.03 1.59 5.34 29.85 0.16 1.74 16 10 C 0.09 3.93 4.68 71.98 0.34 4.27 16 11 O -0.34 -15.57 10.14 -92.32 -0.94 -16.51 16 12 C 0.11 4.00 6.69 22.51 0.15 4.15 16 13 C -0.22 -7.26 9.04 22.37 0.20 -7.05 16 14 C -0.08 -1.90 10.04 22.25 0.22 -1.68 16 15 C -0.15 -3.38 9.70 22.29 0.22 -3.17 16 16 C -0.04 -0.90 5.43 -19.88 -0.11 -1.01 16 17 C 0.07 1.25 4.93 85.56 0.42 1.68 16 18 N -0.50 -9.54 6.14 -931.88 -5.72 -15.27 16 19 C 0.02 0.25 7.18 85.97 0.62 0.86 16 20 C -0.08 -1.11 0.96 -52.01 -0.05 -1.16 16 21 C 0.02 0.23 7.25 85.96 0.62 0.86 16 22 C -0.11 -1.05 6.27 31.03 0.19 -0.86 16 23 C -0.12 -1.16 6.82 31.45 0.21 -0.95 16 24 C -0.12 -1.45 6.84 31.77 0.22 -1.23 16 25 C -0.10 -1.45 6.21 31.57 0.20 -1.26 16 26 C -0.16 -5.19 9.64 22.37 0.22 -4.98 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 31 H 0.06 2.53 7.66 -2.39 -0.02 2.52 16 32 H 0.13 4.02 6.30 -2.92 -0.02 4.00 16 33 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.08 1.54 8.02 -2.39 -0.02 1.52 16 36 H 0.08 1.08 7.33 -2.39 -0.02 1.07 16 37 H 0.08 1.33 8.12 -2.38 -0.02 1.31 16 38 H 0.08 0.99 7.76 -2.39 -0.02 0.97 16 39 H 0.09 0.98 7.48 -2.39 -0.02 0.96 16 40 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 41 H 0.07 0.60 7.84 -2.39 -0.02 0.59 16 42 H 0.07 0.64 8.10 -2.39 -0.02 0.62 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.04 8.07 -2.39 -0.02 1.02 16 49 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -68.66 391.67 1.08 -67.59 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.90 Total: 15.96 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 4.53 Total: -40.63 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -5.44 Total: -72.56 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.94 Total: -16.51 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.66 1.08 -67.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362325730.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.431 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds