Wall clock time and date at job start Tue Mar 31 2020 11:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99427 * 2 1 4 4 H 1.48497 * 109.47119 * 239.99757 * 3 2 1 5 5 H 1.48501 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47209 * 120.00257 * 3 2 1 7 7 C 1.37876 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46862 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.47262 * 55.00087 * 10 9 7 12 12 N 1.46902 * 109.47117 * 294.99855 * 10 9 7 13 13 C 1.46900 * 110.99911 * 155.00032 * 12 10 9 14 14 H 1.08996 * 112.86260 * 336.26352 * 13 12 10 15 15 C 1.53866 * 113.63271 * 107.63380 * 13 12 10 16 16 C 1.53864 * 87.15677 * 89.42754 * 15 13 12 17 17 C 1.53304 * 113.63644 * 205.00199 * 13 12 10 18 18 C 1.52829 * 113.65115 * 155.90162 * 17 13 12 19 19 C 1.53277 * 108.86366 * 175.80533 * 18 17 13 20 20 O 1.42886 * 109.33026 * 55.29584 * 19 18 17 21 21 C 1.42895 * 114.37889 * 297.01216 * 20 19 18 22 22 C 1.52825 * 113.65661 * 25.40529 * 17 13 12 23 23 C 1.50701 * 109.46837 * 175.00069 * 10 9 7 24 24 C 1.38232 * 119.99886 * 79.90930 * 23 10 9 25 25 C 1.38243 * 120.00069 * 179.97438 * 24 23 10 26 26 C 1.38235 * 119.99602 * 0.09581 * 25 24 23 27 27 C 1.38230 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 120.00242 * 259.99876 * 23 10 9 29 29 H 0.96993 * 120.00383 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46957 * 60.00071 * 9 7 2 31 31 H 1.08997 * 109.47032 * 299.99777 * 9 7 2 32 32 H 1.00897 * 111.00066 * 278.95884 * 12 10 9 33 33 H 1.08997 * 113.60061 * 203.99211 * 15 13 12 34 34 H 1.08996 * 113.60072 * 334.86162 * 15 13 12 35 35 H 1.09000 * 113.64066 * 270.56879 * 16 15 13 36 36 H 1.09004 * 113.63477 * 139.59913 * 16 15 13 37 37 H 1.08998 * 109.57303 * 295.62148 * 18 17 13 38 38 H 1.08999 * 109.57293 * 55.99433 * 18 17 13 39 39 H 1.08998 * 109.49566 * 295.33018 * 19 18 17 40 40 H 1.09010 * 109.48855 * 175.24499 * 19 18 17 41 41 H 1.08996 * 109.49994 * 303.04254 * 21 20 19 42 42 H 1.09002 * 109.52495 * 182.95822 * 21 20 19 43 43 H 1.08999 * 109.57708 * 304.02263 * 22 17 13 44 44 H 1.08999 * 109.57583 * 64.39056 * 22 17 13 45 45 H 1.08001 * 120.00365 * 0.06714 * 24 23 10 46 46 H 1.08000 * 119.99728 * 180.36512 * 25 24 23 47 47 H 1.08000 * 119.99297 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00371 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99729 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0017 10 6 2.2455 -3.6620 0.0015 11 1 2.9303 -3.5548 0.8426 12 7 3.0076 -3.6544 -1.2544 13 6 4.3090 -4.3144 -1.0845 14 1 4.6519 -4.3144 -0.0499 15 6 4.3956 -5.6916 -1.7652 16 6 4.8839 -4.9535 -3.0238 17 6 5.3718 -3.8443 -2.0843 18 6 6.8055 -4.0440 -1.5942 19 6 7.7724 -3.6383 -2.7122 20 8 7.4875 -2.2992 -3.1212 21 6 6.1864 -2.1186 -3.6838 22 6 5.1267 -2.4351 -2.6225 23 6 1.4963 -4.9636 0.1264 24 6 0.8923 -5.5228 -0.9841 25 6 0.2054 -6.7170 -0.8696 26 6 0.1210 -7.3509 0.3559 27 6 0.7238 -6.7911 1.4667 28 6 1.4115 -5.5974 1.3520 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5575 -0.8880 31 1 0.6249 -2.5563 0.8920 32 1 2.4798 -4.0822 -2.0003 33 1 5.1461 -6.3489 -1.3261 34 1 3.4282 -6.1774 -1.8919 35 1 4.0778 -4.6409 -3.6876 36 1 5.6894 -5.4683 -3.5475 37 1 6.9812 -3.4226 -0.7162 38 1 6.9615 -5.0922 -1.3391 39 1 7.6506 -4.3116 -3.5607 40 1 8.7973 -3.6963 -2.3454 41 1 6.0614 -2.7891 -4.5340 42 1 6.0728 -1.0863 -4.0148 43 1 4.1344 -2.3826 -3.0704 44 1 5.1998 -1.7150 -1.8075 45 1 0.9582 -5.0274 -1.9416 46 1 -0.2615 -7.1568 -1.7385 47 1 -0.4160 -8.2837 0.4454 48 1 0.6575 -7.2861 2.4243 49 1 1.8825 -5.1600 2.2198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377121706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:46 Heat of formation + Delta-G solvation = -7.677253 kcal Electronic energy + Delta-G solvation = -27561.902194 eV Core-core repulsion = 24067.794137 eV Total energy + Delta-G solvation = -3494.108058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.62749 -39.08425 -37.45714 -35.08904 -32.49988 -31.08489 -30.93231 -30.58808 -29.73072 -28.39267 -25.02498 -24.29910 -24.16143 -23.04790 -22.31050 -21.87100 -20.73227 -19.69517 -17.90000 -16.98771 -16.09362 -15.98720 -15.86770 -15.43430 -14.90372 -14.74832 -14.54332 -14.39689 -14.09435 -13.81218 -13.47837 -13.30802 -13.04299 -12.97649 -12.60235 -12.41471 -12.11751 -12.02684 -11.69986 -11.39791 -11.12181 -11.08553 -11.01818 -10.92857 -10.74349 -10.67263 -10.54591 -10.22895 -10.15797 -10.04254 -9.67671 -9.62257 -9.13355 -8.98498 -8.63315 -8.26270 -8.20767 -7.68663 -5.88089 -3.86404 1.68383 1.69826 3.41539 3.45485 3.49185 4.02245 4.09931 4.43810 4.56793 4.68100 4.83485 4.95006 5.11347 5.14760 5.18559 5.19932 5.24604 5.27846 5.37110 5.43087 5.47600 5.49622 5.60116 5.67949 5.74981 5.81277 5.82314 5.83986 5.85987 5.95325 6.01303 6.12002 6.15574 6.22451 6.28831 6.34323 6.39274 6.46675 6.68093 6.74420 6.75571 6.82502 6.86246 6.97860 7.31265 7.37096 7.53649 7.65931 7.96688 8.02357 8.13594 8.55728 9.18586 9.75068 11.23656 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007678 B = 0.006571 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.107228 B = 4259.845343 C = 7301.246624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.488 4.488 8 H 0.060 0.940 9 C 0.043 3.957 10 C 0.131 3.869 11 H 0.074 0.926 12 N -0.634 5.634 13 C 0.085 3.915 14 H 0.076 0.924 15 C -0.171 4.171 16 C -0.130 4.130 17 C -0.074 4.074 18 C -0.130 4.130 19 C 0.066 3.934 20 O -0.388 6.388 21 C 0.059 3.941 22 C -0.121 4.121 23 C -0.087 4.087 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.137 4.137 27 C -0.120 4.120 28 C -0.117 4.117 29 H 0.258 0.742 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.334 0.666 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -14.254 -4.255 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.147 4.147 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.021 3.979 11 H 0.093 0.907 12 N -0.263 5.263 13 C -0.026 4.026 14 H 0.094 0.906 15 C -0.210 4.210 16 C -0.168 4.168 17 C -0.075 4.075 18 C -0.168 4.168 19 C -0.011 4.011 20 O -0.306 6.306 21 C -0.018 4.018 22 C -0.158 4.158 23 C -0.089 4.089 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.156 4.156 27 C -0.139 4.139 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.072 -13.312 -4.149 16.635 hybrid contribution -0.218 -0.320 0.052 0.391 sum 8.854 -13.632 -4.098 16.763 Atomic orbital electron populations 1.69957 1.05973 1.26353 1.52047 1.24977 0.94723 0.98970 0.96043 0.86719 0.79504 0.83541 0.78548 1.20265 1.21709 1.20560 1.21054 0.93135 0.89996 1.48506 0.92205 1.19084 0.92716 0.90454 0.97202 1.21059 0.94948 0.90782 0.91100 0.90739 1.60430 1.02840 1.56193 1.06847 1.22622 0.91599 0.90797 0.97628 0.90627 1.23640 1.01293 0.98019 0.98069 1.22924 1.00374 0.97263 0.96207 1.21643 0.93824 0.95148 0.96868 1.21925 0.94058 1.01520 0.99266 1.22499 0.98449 0.84120 0.96015 1.87860 1.33513 1.28012 1.81262 1.22724 0.82684 1.01251 0.95120 1.21850 0.99117 0.95764 0.99092 1.21169 0.97333 0.97190 0.93180 1.20924 0.98333 0.95747 0.98696 1.21042 0.99488 0.95833 0.97370 1.20992 1.01165 1.00167 0.93237 1.21071 0.98329 0.96263 0.98197 1.21070 0.99898 0.95244 0.97366 0.93269 0.96365 0.96380 0.84491 0.90693 0.91612 0.90128 0.92333 0.90780 0.91307 0.93676 0.89501 0.93911 0.89297 0.89454 0.90588 0.86401 0.86720 0.86874 0.86733 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.49 -13.26 8.84 -34.44 -0.30 -13.57 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16 10 C 0.13 2.50 2.16 -68.86 -0.15 2.35 16 11 H 0.07 1.47 7.33 -51.93 -0.38 1.09 16 12 N -0.63 -10.83 4.80 -100.32 -0.48 -11.31 16 13 C 0.09 1.24 3.60 -67.10 -0.24 1.00 16 14 H 0.08 1.17 7.43 -51.93 -0.39 0.79 16 15 C -0.17 -2.11 7.26 -25.83 -0.19 -2.29 16 16 C -0.13 -1.54 6.80 -26.11 -0.18 -1.72 16 17 C -0.07 -0.98 0.75 -154.36 -0.12 -1.10 16 18 C -0.13 -1.55 5.24 -26.68 -0.14 -1.69 16 19 C 0.07 0.76 6.77 37.30 0.25 1.01 16 20 O -0.39 -5.58 10.72 -35.23 -0.38 -5.95 16 21 C 0.06 0.80 6.78 37.30 0.25 1.05 16 22 C -0.12 -1.83 4.83 -26.67 -0.13 -1.96 16 23 C -0.09 -1.47 4.82 -104.62 -0.50 -1.98 16 24 C -0.12 -1.85 8.56 -39.58 -0.34 -2.19 16 25 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 26 C -0.14 -1.81 10.05 -39.59 -0.40 -2.21 16 27 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 28 C -0.12 -1.84 9.67 -39.58 -0.38 -2.23 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.33 5.44 5.78 -39.29 -0.23 5.21 16 33 H 0.07 0.85 7.65 -51.93 -0.40 0.46 16 34 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16 35 H 0.08 0.98 7.99 -51.93 -0.42 0.57 16 36 H 0.06 0.63 7.63 -51.93 -0.40 0.23 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.71 7.35 -51.93 -0.38 0.33 16 39 H 0.04 0.47 7.67 -51.93 -0.40 0.08 16 40 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.42 7.49 -51.93 -0.39 1.03 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.12 1.79 6.52 -52.49 -0.34 1.44 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 48 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.12 1.76 8.04 -52.49 -0.42 1.34 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -29.76 381.53 -11.27 -41.03 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.29 Total: 7.17 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.58 Total: -27.32 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.25 Total: -37.57 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.38 Total: -5.95 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.76 -11.27 -41.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377121706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.349 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds