Wall clock time and date at job start Tue Mar 31 2020 11:59:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86795 * 119.99427 * 2 1
4 4 H 1.48497 * 109.47119 * 239.99757 * 3 2 1
5 5 H 1.48501 * 109.47354 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47209 * 120.00257 * 3 2 1
7 7 C 1.37876 * 120.00203 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99834 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00054 * 359.97438 * 7 2 1
10 10 C 1.53004 * 109.46862 * 179.97438 * 9 7 2
11 11 H 1.08991 * 109.47262 * 55.00087 * 10 9 7
12 12 N 1.46902 * 109.47117 * 294.99855 * 10 9 7
13 13 C 1.46900 * 110.99911 * 155.00032 * 12 10 9
14 14 H 1.08996 * 112.86260 * 336.26352 * 13 12 10
15 15 C 1.53866 * 113.63271 * 107.63380 * 13 12 10
16 16 C 1.53864 * 87.15677 * 89.42754 * 15 13 12
17 17 C 1.53304 * 113.63644 * 205.00199 * 13 12 10
18 18 C 1.52829 * 113.65115 * 155.90162 * 17 13 12
19 19 C 1.53277 * 108.86366 * 175.80533 * 18 17 13
20 20 O 1.42886 * 109.33026 * 55.29584 * 19 18 17
21 21 C 1.42895 * 114.37889 * 297.01216 * 20 19 18
22 22 C 1.52825 * 113.65661 * 25.40529 * 17 13 12
23 23 C 1.50701 * 109.46837 * 175.00069 * 10 9 7
24 24 C 1.38232 * 119.99886 * 79.90930 * 23 10 9
25 25 C 1.38243 * 120.00069 * 179.97438 * 24 23 10
26 26 C 1.38235 * 119.99602 * 0.09581 * 25 24 23
27 27 C 1.38230 * 120.00326 * 359.97438 * 26 25 24
28 28 C 1.38234 * 120.00242 * 259.99876 * 23 10 9
29 29 H 0.96993 * 120.00383 * 359.97438 * 1 2 3
30 30 H 1.09004 * 109.46957 * 60.00071 * 9 7 2
31 31 H 1.08997 * 109.47032 * 299.99777 * 9 7 2
32 32 H 1.00897 * 111.00066 * 278.95884 * 12 10 9
33 33 H 1.08997 * 113.60061 * 203.99211 * 15 13 12
34 34 H 1.08996 * 113.60072 * 334.86162 * 15 13 12
35 35 H 1.09000 * 113.64066 * 270.56879 * 16 15 13
36 36 H 1.09004 * 113.63477 * 139.59913 * 16 15 13
37 37 H 1.08998 * 109.57303 * 295.62148 * 18 17 13
38 38 H 1.08999 * 109.57293 * 55.99433 * 18 17 13
39 39 H 1.08998 * 109.49566 * 295.33018 * 19 18 17
40 40 H 1.09010 * 109.48855 * 175.24499 * 19 18 17
41 41 H 1.08996 * 109.49994 * 303.04254 * 21 20 19
42 42 H 1.09002 * 109.52495 * 182.95822 * 21 20 19
43 43 H 1.08999 * 109.57708 * 304.02263 * 22 17 13
44 44 H 1.08999 * 109.57583 * 64.39056 * 22 17 13
45 45 H 1.08001 * 120.00365 * 0.06714 * 24 23 10
46 46 H 1.08000 * 119.99728 * 180.36512 * 25 24 23
47 47 H 1.08000 * 119.99297 * 179.97438 * 26 25 24
48 48 H 1.08001 * 120.00371 * 179.97438 * 27 26 25
49 49 H 1.08000 * 119.99729 * 359.97438 * 28 23 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1028 1.6965 -1.2124
5 1 1.2839 2.7465 -0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2512 -2.4992 0.0017
10 6 2.2455 -3.6620 0.0015
11 1 2.9303 -3.5548 0.8426
12 7 3.0076 -3.6544 -1.2544
13 6 4.3090 -4.3144 -1.0845
14 1 4.6519 -4.3144 -0.0499
15 6 4.3956 -5.6916 -1.7652
16 6 4.8839 -4.9535 -3.0238
17 6 5.3718 -3.8443 -2.0843
18 6 6.8055 -4.0440 -1.5942
19 6 7.7724 -3.6383 -2.7122
20 8 7.4875 -2.2992 -3.1212
21 6 6.1864 -2.1186 -3.6838
22 6 5.1267 -2.4351 -2.6225
23 6 1.4963 -4.9636 0.1264
24 6 0.8923 -5.5228 -0.9841
25 6 0.2054 -6.7170 -0.8696
26 6 0.1210 -7.3509 0.3559
27 6 0.7238 -6.7911 1.4667
28 6 1.4115 -5.5974 1.3520
29 1 -0.4850 0.8400 0.0004
30 1 0.6242 -2.5575 -0.8880
31 1 0.6249 -2.5563 0.8920
32 1 2.4798 -4.0822 -2.0003
33 1 5.1461 -6.3489 -1.3261
34 1 3.4282 -6.1774 -1.8919
35 1 4.0778 -4.6409 -3.6876
36 1 5.6894 -5.4683 -3.5475
37 1 6.9812 -3.4226 -0.7162
38 1 6.9615 -5.0922 -1.3391
39 1 7.6506 -4.3116 -3.5607
40 1 8.7973 -3.6963 -2.3454
41 1 6.0614 -2.7891 -4.5340
42 1 6.0728 -1.0863 -4.0148
43 1 4.1344 -2.3826 -3.0704
44 1 5.1998 -1.7150 -1.8075
45 1 0.9582 -5.0274 -1.9416
46 1 -0.2615 -7.1568 -1.7385
47 1 -0.4160 -8.2837 0.4454
48 1 0.6575 -7.2861 2.4243
49 1 1.8825 -5.1600 2.2198
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000377121706.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:59:46
Heat of formation + Delta-G solvation = -7.677253 kcal
Electronic energy + Delta-G solvation = -27561.902194 eV
Core-core repulsion = 24067.794137 eV
Total energy + Delta-G solvation = -3494.108058 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.62749 -39.08425 -37.45714 -35.08904 -32.49988 -31.08489 -30.93231 -30.58808
-29.73072 -28.39267 -25.02498 -24.29910 -24.16143 -23.04790 -22.31050 -21.87100
-20.73227 -19.69517 -17.90000 -16.98771 -16.09362 -15.98720 -15.86770 -15.43430
-14.90372 -14.74832 -14.54332 -14.39689 -14.09435 -13.81218 -13.47837 -13.30802
-13.04299 -12.97649 -12.60235 -12.41471 -12.11751 -12.02684 -11.69986 -11.39791
-11.12181 -11.08553 -11.01818 -10.92857 -10.74349 -10.67263 -10.54591 -10.22895
-10.15797 -10.04254 -9.67671 -9.62257 -9.13355 -8.98498 -8.63315 -8.26270
-8.20767 -7.68663 -5.88089 -3.86404 1.68383 1.69826 3.41539 3.45485
3.49185 4.02245 4.09931 4.43810 4.56793 4.68100 4.83485 4.95006
5.11347 5.14760 5.18559 5.19932 5.24604 5.27846 5.37110 5.43087
5.47600 5.49622 5.60116 5.67949 5.74981 5.81277 5.82314 5.83986
5.85987 5.95325 6.01303 6.12002 6.15574 6.22451 6.28831 6.34323
6.39274 6.46675 6.68093 6.74420 6.75571 6.82502 6.86246 6.97860
7.31265 7.37096 7.53649 7.65931 7.96688 8.02357 8.13594 8.55728
9.18586 9.75068 11.23656
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.007678 B = 0.006571 C = 0.003834
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3646.107228 B = 4259.845343 C = 7301.246624
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.052 3.948
3 Si 0.888 3.112
4 H -0.277 1.277
5 H -0.291 1.291
6 H -0.280 1.280
7 C -0.488 4.488
8 H 0.060 0.940
9 C 0.043 3.957
10 C 0.131 3.869
11 H 0.074 0.926
12 N -0.634 5.634
13 C 0.085 3.915
14 H 0.076 0.924
15 C -0.171 4.171
16 C -0.130 4.130
17 C -0.074 4.074
18 C -0.130 4.130
19 C 0.066 3.934
20 O -0.388 6.388
21 C 0.059 3.941
22 C -0.121 4.121
23 C -0.087 4.087
24 C -0.119 4.119
25 C -0.119 4.119
26 C -0.137 4.137
27 C -0.120 4.120
28 C -0.117 4.117
29 H 0.258 0.742
30 H 0.018 0.982
31 H 0.018 0.982
32 H 0.334 0.666
33 H 0.074 0.926
34 H 0.065 0.935
35 H 0.080 0.920
36 H 0.058 0.942
37 H 0.074 0.926
38 H 0.068 0.932
39 H 0.045 0.955
40 H 0.087 0.913
41 H 0.043 0.957
42 H 0.089 0.911
43 H 0.087 0.913
44 H 0.075 0.925
45 H 0.118 0.882
46 H 0.115 0.885
47 H 0.113 0.887
48 H 0.115 0.885
49 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.854 -14.254 -4.255 17.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.147 4.147
3 Si 0.717 3.283
4 H -0.203 1.203
5 H -0.217 1.217
6 H -0.206 1.206
7 C -0.527 4.527
8 H 0.078 0.922
9 C 0.005 3.995
10 C 0.021 3.979
11 H 0.093 0.907
12 N -0.263 5.263
13 C -0.026 4.026
14 H 0.094 0.906
15 C -0.210 4.210
16 C -0.168 4.168
17 C -0.075 4.075
18 C -0.168 4.168
19 C -0.011 4.011
20 O -0.306 6.306
21 C -0.018 4.018
22 C -0.158 4.158
23 C -0.089 4.089
24 C -0.137 4.137
25 C -0.137 4.137
26 C -0.156 4.156
27 C -0.139 4.139
28 C -0.136 4.136
29 H 0.067 0.933
30 H 0.036 0.964
31 H 0.036 0.964
32 H 0.155 0.845
33 H 0.093 0.907
34 H 0.084 0.916
35 H 0.099 0.901
36 H 0.077 0.923
37 H 0.092 0.908
38 H 0.087 0.913
39 H 0.063 0.937
40 H 0.105 0.895
41 H 0.061 0.939
42 H 0.107 0.893
43 H 0.105 0.895
44 H 0.094 0.906
45 H 0.136 0.864
46 H 0.133 0.867
47 H 0.131 0.869
48 H 0.133 0.867
49 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 9.072 -13.312 -4.149 16.635
hybrid contribution -0.218 -0.320 0.052 0.391
sum 8.854 -13.632 -4.098 16.763
Atomic orbital electron populations
1.69957 1.05973 1.26353 1.52047 1.24977 0.94723 0.98970 0.96043
0.86719 0.79504 0.83541 0.78548 1.20265 1.21709 1.20560 1.21054
0.93135 0.89996 1.48506 0.92205 1.19084 0.92716 0.90454 0.97202
1.21059 0.94948 0.90782 0.91100 0.90739 1.60430 1.02840 1.56193
1.06847 1.22622 0.91599 0.90797 0.97628 0.90627 1.23640 1.01293
0.98019 0.98069 1.22924 1.00374 0.97263 0.96207 1.21643 0.93824
0.95148 0.96868 1.21925 0.94058 1.01520 0.99266 1.22499 0.98449
0.84120 0.96015 1.87860 1.33513 1.28012 1.81262 1.22724 0.82684
1.01251 0.95120 1.21850 0.99117 0.95764 0.99092 1.21169 0.97333
0.97190 0.93180 1.20924 0.98333 0.95747 0.98696 1.21042 0.99488
0.95833 0.97370 1.20992 1.01165 1.00167 0.93237 1.21071 0.98329
0.96263 0.98197 1.21070 0.99898 0.95244 0.97366 0.93269 0.96365
0.96380 0.84491 0.90693 0.91612 0.90128 0.92333 0.90780 0.91307
0.93676 0.89501 0.93911 0.89297 0.89454 0.90588 0.86401 0.86720
0.86874 0.86733 0.86358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16
2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16
3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16
4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
7 C -0.49 -13.26 8.84 -34.44 -0.30 -13.57 16
8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16
9 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16
10 C 0.13 2.50 2.16 -68.86 -0.15 2.35 16
11 H 0.07 1.47 7.33 -51.93 -0.38 1.09 16
12 N -0.63 -10.83 4.80 -100.32 -0.48 -11.31 16
13 C 0.09 1.24 3.60 -67.10 -0.24 1.00 16
14 H 0.08 1.17 7.43 -51.93 -0.39 0.79 16
15 C -0.17 -2.11 7.26 -25.83 -0.19 -2.29 16
16 C -0.13 -1.54 6.80 -26.11 -0.18 -1.72 16
17 C -0.07 -0.98 0.75 -154.36 -0.12 -1.10 16
18 C -0.13 -1.55 5.24 -26.68 -0.14 -1.69 16
19 C 0.07 0.76 6.77 37.30 0.25 1.01 16
20 O -0.39 -5.58 10.72 -35.23 -0.38 -5.95 16
21 C 0.06 0.80 6.78 37.30 0.25 1.05 16
22 C -0.12 -1.83 4.83 -26.67 -0.13 -1.96 16
23 C -0.09 -1.47 4.82 -104.62 -0.50 -1.98 16
24 C -0.12 -1.85 8.56 -39.58 -0.34 -2.19 16
25 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16
26 C -0.14 -1.81 10.05 -39.59 -0.40 -2.21 16
27 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16
28 C -0.12 -1.84 9.67 -39.58 -0.38 -2.23 16
29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
32 H 0.33 5.44 5.78 -39.29 -0.23 5.21 16
33 H 0.07 0.85 7.65 -51.93 -0.40 0.46 16
34 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16
35 H 0.08 0.98 7.99 -51.93 -0.42 0.57 16
36 H 0.06 0.63 7.63 -51.93 -0.40 0.23 16
37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
38 H 0.07 0.71 7.35 -51.93 -0.38 0.33 16
39 H 0.04 0.47 7.67 -51.93 -0.40 0.08 16
40 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16
41 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16
42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
43 H 0.09 1.42 7.49 -51.93 -0.39 1.03 16
44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
45 H 0.12 1.79 6.52 -52.49 -0.34 1.44 16
46 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16
47 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16
48 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16
49 H 0.12 1.76 8.04 -52.49 -0.42 1.34 16
LS Contribution 381.53 15.07 5.75 5.75
Total: -1.00 -29.76 381.53 -11.27 -41.03
By element:
Atomic # 1 Polarization: 15.46 SS G_CDS: -8.29 Total: 7.17 kcal
Atomic # 6 Polarization: -23.73 SS G_CDS: -3.58 Total: -27.32 kcal
Atomic # 7 Polarization: -37.83 SS G_CDS: 0.25 Total: -37.57 kcal
Atomic # 8 Polarization: -5.58 SS G_CDS: -0.38 Total: -5.95 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -29.76 -11.27 -41.03 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000377121706.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.349 kcal
(2) G-P(sol) polarization free energy of solvation -29.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.592 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.677 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds