Wall clock time and date at job start Tue Mar 31 2020 11:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99427 * 2 1 4 4 H 1.48497 * 109.47119 * 239.99757 * 3 2 1 5 5 H 1.48501 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47209 * 120.00257 * 3 2 1 7 7 C 1.37876 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46862 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.47262 * 55.00087 * 10 9 7 12 12 N 1.46902 * 109.47117 * 294.99855 * 10 9 7 13 13 C 1.46900 * 110.99911 * 155.00032 * 12 10 9 14 14 H 1.08996 * 112.86260 * 336.26352 * 13 12 10 15 15 C 1.53866 * 113.63271 * 107.63380 * 13 12 10 16 16 C 1.53864 * 87.15677 * 89.42754 * 15 13 12 17 17 C 1.53304 * 113.63644 * 205.00199 * 13 12 10 18 18 C 1.52829 * 113.65115 * 155.90162 * 17 13 12 19 19 C 1.53277 * 108.86366 * 175.80533 * 18 17 13 20 20 O 1.42886 * 109.33026 * 55.29584 * 19 18 17 21 21 C 1.42895 * 114.37889 * 297.01216 * 20 19 18 22 22 C 1.52825 * 113.65661 * 25.40529 * 17 13 12 23 23 C 1.50701 * 109.46837 * 175.00069 * 10 9 7 24 24 C 1.38232 * 119.99886 * 79.90930 * 23 10 9 25 25 C 1.38243 * 120.00069 * 179.97438 * 24 23 10 26 26 C 1.38235 * 119.99602 * 0.09581 * 25 24 23 27 27 C 1.38230 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 120.00242 * 259.99876 * 23 10 9 29 29 H 0.96993 * 120.00383 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46957 * 60.00071 * 9 7 2 31 31 H 1.08997 * 109.47032 * 299.99777 * 9 7 2 32 32 H 1.00897 * 111.00066 * 278.95884 * 12 10 9 33 33 H 1.08997 * 113.60061 * 203.99211 * 15 13 12 34 34 H 1.08996 * 113.60072 * 334.86162 * 15 13 12 35 35 H 1.09000 * 113.64066 * 270.56879 * 16 15 13 36 36 H 1.09004 * 113.63477 * 139.59913 * 16 15 13 37 37 H 1.08998 * 109.57303 * 295.62148 * 18 17 13 38 38 H 1.08999 * 109.57293 * 55.99433 * 18 17 13 39 39 H 1.08998 * 109.49566 * 295.33018 * 19 18 17 40 40 H 1.09010 * 109.48855 * 175.24499 * 19 18 17 41 41 H 1.08996 * 109.49994 * 303.04254 * 21 20 19 42 42 H 1.09002 * 109.52495 * 182.95822 * 21 20 19 43 43 H 1.08999 * 109.57708 * 304.02263 * 22 17 13 44 44 H 1.08999 * 109.57583 * 64.39056 * 22 17 13 45 45 H 1.08001 * 120.00365 * 0.06714 * 24 23 10 46 46 H 1.08000 * 119.99728 * 180.36512 * 25 24 23 47 47 H 1.08000 * 119.99297 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00371 * 179.97438 * 27 26 25 49 49 H 1.08000 * 119.99729 * 359.97438 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0017 10 6 2.2455 -3.6620 0.0015 11 1 2.9303 -3.5548 0.8426 12 7 3.0076 -3.6544 -1.2544 13 6 4.3090 -4.3144 -1.0845 14 1 4.6519 -4.3144 -0.0499 15 6 4.3956 -5.6916 -1.7652 16 6 4.8839 -4.9535 -3.0238 17 6 5.3718 -3.8443 -2.0843 18 6 6.8055 -4.0440 -1.5942 19 6 7.7724 -3.6383 -2.7122 20 8 7.4875 -2.2992 -3.1212 21 6 6.1864 -2.1186 -3.6838 22 6 5.1267 -2.4351 -2.6225 23 6 1.4963 -4.9636 0.1264 24 6 0.8923 -5.5228 -0.9841 25 6 0.2054 -6.7170 -0.8696 26 6 0.1210 -7.3509 0.3559 27 6 0.7238 -6.7911 1.4667 28 6 1.4115 -5.5974 1.3520 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5575 -0.8880 31 1 0.6249 -2.5563 0.8920 32 1 2.4798 -4.0822 -2.0003 33 1 5.1461 -6.3489 -1.3261 34 1 3.4282 -6.1774 -1.8919 35 1 4.0778 -4.6409 -3.6876 36 1 5.6894 -5.4683 -3.5475 37 1 6.9812 -3.4226 -0.7162 38 1 6.9615 -5.0922 -1.3391 39 1 7.6506 -4.3116 -3.5607 40 1 8.7973 -3.6963 -2.3454 41 1 6.0614 -2.7891 -4.5340 42 1 6.0728 -1.0863 -4.0148 43 1 4.1344 -2.3826 -3.0704 44 1 5.1998 -1.7150 -1.8075 45 1 0.9582 -5.0274 -1.9416 46 1 -0.2615 -7.1568 -1.7385 47 1 -0.4160 -8.2837 0.4454 48 1 0.6575 -7.2861 2.4243 49 1 1.8825 -5.1600 2.2198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377121706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:45 Heat of formation + Delta-G solvation = -23.259346 kcal Electronic energy + Delta-G solvation = -27562.577885 eV Core-core repulsion = 24067.794137 eV Total energy + Delta-G solvation = -3494.783748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74514 -40.27057 -38.54511 -36.56437 -34.53781 -32.18471 -32.09341 -31.71272 -30.90072 -30.19647 -26.54796 -25.62960 -25.20950 -24.13573 -23.71969 -23.24443 -21.83655 -21.14972 -19.06181 -18.50493 -17.75170 -17.17424 -16.91407 -16.61856 -16.44257 -16.12401 -15.81021 -15.61957 -15.24529 -14.98348 -14.66520 -14.62636 -14.37467 -14.18236 -14.05381 -13.84547 -13.58976 -13.23970 -13.03701 -12.80733 -12.74046 -12.56296 -12.29558 -12.25040 -12.14723 -12.09885 -11.75920 -11.74471 -11.54668 -11.32155 -11.17977 -11.06392 -10.69435 -10.49070 -10.20710 -9.77394 -9.50435 -9.00968 -8.09915 -6.14601 0.52402 0.54189 1.40143 1.42258 1.49796 2.46002 2.93532 3.03224 3.18336 3.28659 3.60874 3.79548 3.87875 3.94892 4.01103 4.07050 4.18195 4.19655 4.23241 4.31440 4.32264 4.48915 4.54572 4.57604 4.64395 4.69283 4.73323 4.77206 4.81545 4.88751 4.91678 5.01661 5.04268 5.05968 5.16392 5.19314 5.20212 5.29696 5.36110 5.47586 5.57556 5.58020 5.62642 5.62881 5.65426 5.78762 5.89451 6.17442 6.33388 6.36195 6.49080 6.70140 6.98512 7.50825 9.01842 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.007678 B = 0.006571 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.107228 B = 4259.845343 C = 7301.246624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.001 4.001 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.056 0.944 9 C 0.054 3.946 10 C 0.149 3.851 11 H 0.060 0.940 12 N -0.646 5.646 13 C 0.075 3.925 14 H 0.061 0.939 15 C -0.155 4.155 16 C -0.118 4.118 17 C -0.073 4.073 18 C -0.126 4.126 19 C 0.062 3.938 20 O -0.408 6.408 21 C 0.064 3.936 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.131 4.131 27 C -0.120 4.120 28 C -0.135 4.135 29 H 0.258 0.742 30 H -0.009 1.009 31 H -0.015 1.015 32 H 0.337 0.663 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.114 0.886 46 H 0.142 0.858 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -16.801 -5.112 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.197 4.197 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.017 3.983 10 C 0.039 3.961 11 H 0.078 0.922 12 N -0.275 5.275 13 C -0.036 4.036 14 H 0.079 0.921 15 C -0.194 4.194 16 C -0.155 4.155 17 C -0.074 4.074 18 C -0.164 4.164 19 C -0.014 4.014 20 O -0.327 6.327 21 C -0.013 4.013 22 C -0.155 4.155 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.149 4.149 27 C -0.138 4.138 28 C -0.153 4.153 29 H 0.067 0.933 30 H 0.009 0.991 31 H 0.003 0.997 32 H 0.159 0.841 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.132 0.868 46 H 0.160 0.840 47 H 0.166 0.834 48 H 0.160 0.840 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.374 -15.872 -5.006 19.611 hybrid contribution -0.651 0.418 0.362 0.854 sum 9.722 -15.454 -4.644 18.840 Atomic orbital electron populations 1.70088 1.07478 1.27121 1.53411 1.25777 0.95506 1.02514 0.95919 0.85717 0.78317 0.79445 0.78817 1.19675 1.21263 1.19813 1.21360 0.93080 0.91293 1.47413 0.92572 1.18848 0.93021 0.92292 0.94147 1.20489 0.93679 0.90312 0.91650 0.92218 1.60275 1.03722 1.57574 1.05947 1.22668 0.90503 0.92970 0.97477 0.92120 1.23525 1.01671 0.96584 0.97616 1.22842 1.00753 0.96089 0.95811 1.21686 0.94433 0.94403 0.96889 1.21920 0.92989 1.02601 0.98874 1.22721 0.99191 0.83106 0.96373 1.87837 1.33388 1.30004 1.81474 1.22666 0.81975 1.01767 0.94870 1.21741 0.99070 0.96312 0.98391 1.20919 0.98812 0.96659 0.94557 1.20995 0.98940 0.96787 0.98087 1.21379 0.98583 0.94872 0.98890 1.21432 1.00062 1.00980 0.92434 1.21398 0.97227 0.95283 0.99878 1.21209 1.00860 0.96478 0.96791 0.93308 0.99078 0.99699 0.84143 0.88921 0.91983 0.90578 0.89991 0.92562 0.88986 0.91779 0.87590 0.91838 0.89524 0.91138 0.94465 0.86778 0.84010 0.83437 0.84001 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.95 46.31 29.54 68.60 2.03 48.33 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.49 -28.15 8.84 25.60 0.23 -27.93 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.05 2.86 4.63 29.85 0.14 3.00 16 10 C 0.15 6.05 2.16 44.17 0.10 6.14 16 11 H 0.06 2.54 7.33 -2.39 -0.02 2.53 16 12 N -0.65 -23.14 4.80 -471.29 -2.26 -25.40 16 13 C 0.07 2.20 3.60 45.31 0.16 2.37 16 14 H 0.06 1.95 7.43 -2.39 -0.02 1.93 16 15 C -0.15 -3.53 7.26 31.18 0.23 -3.30 16 16 C -0.12 -2.53 6.80 31.00 0.21 -2.31 16 17 C -0.07 -1.90 0.75 -52.08 -0.04 -1.94 16 18 C -0.13 -2.80 5.24 30.63 0.16 -2.64 16 19 C 0.06 1.27 6.77 72.07 0.49 1.76 16 20 O -0.41 -11.20 10.72 -148.98 -1.60 -12.79 16 21 C 0.06 1.68 6.78 72.08 0.49 2.17 16 22 C -0.12 -3.66 4.83 30.63 0.15 -3.51 16 23 C -0.11 -3.76 4.82 -19.87 -0.10 -3.85 16 24 C -0.13 -4.04 8.56 22.27 0.19 -3.85 16 25 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 26 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 27 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 28 C -0.13 -4.26 9.67 22.27 0.22 -4.05 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 31 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.34 11.44 5.78 -89.70 -0.52 10.93 16 33 H 0.09 1.82 7.65 -2.39 -0.02 1.80 16 34 H 0.06 1.49 7.49 -2.39 -0.02 1.48 16 35 H 0.08 1.73 7.99 -2.39 -0.02 1.71 16 36 H 0.08 1.42 7.63 -2.38 -0.02 1.41 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.62 7.35 -2.39 -0.02 1.61 16 39 H 0.06 1.09 7.67 -2.39 -0.02 1.07 16 40 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 42 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 2.39 7.49 -2.39 -0.02 2.38 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.11 3.54 6.52 -2.91 -0.02 3.52 16 46 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 47 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 48 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 49 H 0.12 3.58 8.04 -2.91 -0.02 3.56 16 Total: -1.00 -67.58 381.53 2.60 -64.98 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.40 Total: 28.91 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 3.75 Total: -45.99 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -1.98 Total: -83.43 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.60 Total: -12.79 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -67.58 2.60 -64.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377121706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.717 kcal (2) G-P(sol) polarization free energy of solvation -67.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds