Wall clock time and date at job start Tue Mar 31 2020 10:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 115.55442 * 2 1 4 4 C 1.53076 * 117.49548 * 145.73265 * 2 1 3 5 5 C 1.52995 * 59.98424 * 107.48157 * 4 2 1 6 6 H 1.09003 * 117.49868 * 107.50231 * 5 4 2 7 7 C 1.50706 * 117.50030 * 252.49577 * 5 4 2 8 8 N 1.30972 * 126.23830 * 8.43995 * 7 5 4 9 9 N 1.28678 * 110.05432 * 179.87492 * 8 7 5 10 10 C 1.31693 * 109.38703 * 0.39139 * 9 8 7 11 11 C 1.46555 * 132.90693 * 179.79815 * 10 9 8 12 12 C 1.35047 * 119.51754 * 179.97438 * 11 10 9 13 13 C 1.46945 * 119.43568 * 0.02562 * 12 11 10 14 14 N 1.30679 * 120.09443 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99948 * 353.48535 * 14 13 12 16 16 C 1.53001 * 109.47516 * 114.22795 * 15 14 13 17 17 C 1.53001 * 109.47209 * 300.00539 * 16 15 14 18 18 C 1.53007 * 109.46548 * 60.00338 * 16 15 14 19 19 C 1.50697 * 109.47259 * 180.02562 * 16 15 14 20 20 H 1.07994 * 120.00393 * 0.02562 * 19 16 15 21 21 C 1.37883 * 119.99599 * 180.02562 * 19 16 15 22 22 N 1.31510 * 120.00321 * 359.97438 * 21 19 16 23 23 Si 1.86806 * 119.99581 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47176 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46894 * 119.99784 * 23 21 19 26 26 H 1.48496 * 109.46680 * 239.99626 * 23 21 19 27 27 N 1.38161 * 119.81855 * 359.97438 * 13 12 11 28 28 H 0.97003 * 119.82953 * 180.02562 * 27 13 12 29 29 N 1.35016 * 126.23880 * 188.74841 * 7 5 4 30 30 H 1.09003 * 109.47141 * 205.67510 * 1 2 3 31 31 H 1.09011 * 109.46907 * 325.66811 * 1 2 3 32 32 H 1.08994 * 109.47624 * 85.66818 * 1 2 3 33 33 H 1.09005 * 117.49304 * 359.97438 * 4 2 1 34 34 H 1.09001 * 117.51501 * 214.96300 * 4 2 1 35 35 H 1.07997 * 120.24627 * 359.95860 * 11 10 9 36 36 H 1.07996 * 120.28156 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47460 * 234.23623 * 15 14 13 38 38 H 1.09011 * 109.46990 * 354.22920 * 15 14 13 39 39 H 1.09004 * 109.46948 * 59.99481 * 17 16 15 40 40 H 1.08993 * 109.47012 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.46790 * 299.99771 * 17 16 15 42 42 H 1.08998 * 109.46840 * 60.00144 * 18 16 15 43 43 H 1.09003 * 109.46938 * 180.02562 * 18 16 15 44 44 H 1.09002 * 109.47385 * 299.99768 * 18 16 15 45 45 H 0.96996 * 120.00065 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2367 -1.1222 0.7645 5 6 2.2363 -1.1207 -0.7654 6 1 3.1714 -0.8747 -1.2687 7 6 1.3719 -2.1399 -1.4621 8 7 0.4977 -2.9321 -0.8932 9 7 -0.0670 -3.6747 -1.7795 10 6 0.4308 -3.3947 -2.9661 11 6 0.1684 -3.9222 -4.3080 12 6 0.8509 -3.4270 -5.3628 13 6 1.8458 -2.3675 -5.1462 14 7 2.5139 -1.8793 -6.1576 15 6 2.3776 -2.4829 -7.4855 16 6 1.7127 -1.4836 -8.4343 17 6 0.3285 -1.1140 -7.8974 18 6 2.5746 -0.2233 -8.5331 19 6 1.5719 -2.1049 -9.8000 20 1 1.9212 -3.1119 -9.9738 21 6 0.9970 -1.3875 -10.8276 22 7 0.5711 -0.1615 -10.6159 23 14 0.8218 -2.1579 -12.5204 24 1 1.3742 -3.5361 -12.4966 25 1 -0.6141 -2.2060 -12.8961 26 1 1.5665 -1.3436 -13.5142 27 7 2.0729 -1.8888 -3.8702 28 1 2.7293 -1.1891 -3.7271 29 7 1.3615 -2.4067 -2.7856 30 1 -0.3633 -0.9262 0.4453 31 1 -0.3633 0.8487 0.5797 32 1 -0.3634 0.0776 -1.0246 33 1 1.6113 -1.8597 1.2676 34 1 3.1719 -0.8771 1.2679 35 1 -0.5653 -4.7015 -4.4523 36 1 0.6671 -3.8064 -6.3571 37 1 3.3637 -2.7463 -7.8679 38 1 1.7636 -3.3809 -7.4151 39 1 0.4300 -0.6649 -6.9094 40 1 -0.1450 -0.4018 -8.5731 41 1 -0.2855 -2.0119 -7.8270 42 1 3.5608 -0.4867 -8.9155 43 1 2.1008 0.4889 -9.2087 44 1 2.6761 0.2259 -7.5451 45 1 0.1664 0.3430 -11.3387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413414011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:18 Heat of formation + Delta-G solvation = 188.082049 kcal Electronic energy + Delta-G solvation = -26229.324834 eV Core-core repulsion = 22672.457944 eV Total energy + Delta-G solvation = -3556.866890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.41051 -38.86056 -38.12418 -36.53090 -34.38689 -33.43994 -31.58685 -30.43218 -29.60341 -28.71266 -25.78061 -25.56117 -25.03144 -24.68019 -23.71478 -22.21129 -21.53504 -20.65949 -19.12709 -18.25711 -17.76076 -16.84412 -16.38237 -16.14877 -15.83084 -15.49965 -14.88021 -14.82014 -13.86558 -13.56048 -13.40423 -13.04910 -12.98203 -12.77667 -12.68128 -12.34306 -12.27175 -12.02704 -11.72014 -11.64717 -11.32101 -11.27181 -10.93060 -10.87244 -10.68878 -10.66400 -10.49942 -10.37191 -10.28217 -10.18369 -9.58154 -9.49461 -9.05194 -8.79535 -8.60456 -8.38048 -7.77359 -6.01746 -4.13915 0.65844 0.93999 1.63745 2.52568 3.15441 3.24198 3.26707 3.33215 3.35926 3.44731 3.77107 4.24476 4.30151 4.34731 4.36549 4.45351 4.59381 4.99388 5.02942 5.13307 5.21232 5.24002 5.39624 5.41999 5.56123 5.61459 5.68175 5.72110 5.81117 5.93256 6.02156 6.10838 6.15317 6.36309 6.51812 6.75486 6.97637 7.02040 7.04540 7.14420 7.23351 7.39696 7.61879 7.69164 8.03492 8.15160 8.24250 8.36742 8.41601 8.87490 9.52203 10.98635 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.002926 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.688458 B = 9567.879794 C = 9986.113908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 H 0.115 0.885 4 C -0.142 4.142 5 C -0.095 4.095 6 H 0.124 0.876 7 C 0.217 3.783 8 N -0.268 5.268 9 N -0.255 5.255 10 C 0.186 3.814 11 C -0.053 4.053 12 C -0.121 4.121 13 C 0.381 3.619 14 N -0.532 5.532 15 C 0.072 3.928 16 C 0.074 3.926 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.284 1.284 27 N -0.505 5.505 28 H 0.437 0.563 29 N -0.247 5.247 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.006 0.994 40 H 0.083 0.917 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.077 0.923 44 H 0.016 0.984 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 -1.752 18.501 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.146 4.146 3 H 0.133 0.867 4 C -0.179 4.179 5 C -0.116 4.116 6 H 0.142 0.858 7 C -0.048 4.048 8 N -0.112 5.112 9 N -0.099 5.099 10 C -0.076 4.076 11 C -0.077 4.077 12 C -0.147 4.147 13 C 0.105 3.895 14 N -0.254 5.254 15 C -0.057 4.057 16 C 0.073 3.927 17 C -0.187 4.187 18 C -0.180 4.180 19 C -0.550 4.550 20 H 0.074 0.926 21 C -0.135 4.135 22 N -0.521 5.521 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 N -0.246 5.246 28 H 0.281 0.719 29 N -0.022 5.022 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.035 0.965 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.938 -1.638 19.170 19.337 hybrid contribution 0.438 -0.035 -2.155 2.200 sum 2.376 -1.672 17.015 17.261 Atomic orbital electron populations 1.21416 0.92042 1.02966 1.02027 1.22535 0.96300 0.93934 1.01866 0.86676 1.23238 1.03054 1.01166 0.90467 1.20283 0.98646 0.97440 0.95199 0.85845 1.23534 1.01857 1.01843 0.77611 1.74520 1.08105 1.06064 1.22523 1.74723 1.20725 1.19490 0.94935 1.23356 0.93352 0.93366 0.97537 1.21226 1.00858 1.00348 0.85315 1.23303 0.95147 0.95460 1.00836 1.19755 0.94534 0.91466 0.83740 1.71813 1.25547 1.27577 1.00469 1.22587 1.00798 0.97107 0.85158 1.18163 0.91398 0.91506 0.91621 1.21808 0.99075 1.00167 0.97604 1.21679 0.97907 0.99852 0.98519 1.21100 1.39752 1.00177 0.93971 0.92612 1.24890 0.95153 0.94795 0.98612 1.69839 1.40569 1.09706 1.32011 0.86565 0.77715 0.79431 0.84439 1.19811 1.21068 1.21051 1.42933 1.42134 1.44032 0.95501 0.71883 1.45055 1.27603 1.27601 1.01921 0.91003 0.91782 0.92706 0.86941 0.87659 0.82034 0.80969 0.90367 0.94307 0.97465 0.89791 0.96123 0.95980 0.90431 0.96459 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.13 37.15 0.34 -0.84 16 2 C -0.13 -1.01 6.41 -90.58 -0.58 -1.59 16 3 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -1.06 9.79 -26.69 -0.26 -1.32 16 5 C -0.10 -0.87 6.33 -91.77 -0.58 -1.46 16 6 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 7 C 0.22 2.78 6.92 -155.04 -1.07 1.70 16 8 N -0.27 -3.87 10.99 32.78 0.36 -3.51 16 9 N -0.25 -3.95 12.29 32.23 0.40 -3.55 16 10 C 0.19 2.72 8.17 -154.59 -1.26 1.46 16 11 C -0.05 -0.67 10.29 -37.36 -0.38 -1.05 16 12 C -0.12 -1.70 9.32 -37.19 -0.35 -2.05 16 13 C 0.38 5.96 7.66 -154.09 -1.18 4.78 16 14 N -0.53 -9.55 9.15 -58.64 -0.54 -10.08 16 15 C 0.07 1.42 5.02 -4.04 -0.02 1.40 16 16 C 0.07 1.72 0.57 -155.66 -0.09 1.63 16 17 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 18 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 19 C -0.51 -13.06 8.01 -34.44 -0.28 -13.34 16 20 H 0.06 1.40 7.74 -52.49 -0.41 1.00 16 21 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 22 N -0.88 -23.80 9.35 55.43 0.52 -23.28 16 23 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 N -0.51 -6.90 6.77 32.35 0.22 -6.68 16 28 H 0.44 5.15 8.95 -182.92 -1.64 3.51 16 29 N -0.25 -3.42 3.99 -8.28 -0.03 -3.46 16 30 H 0.07 0.75 7.22 -51.93 -0.37 0.37 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.95 7.82 -51.93 -0.41 0.55 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.17 2.34 5.89 -52.49 -0.31 2.03 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.04 0.70 5.21 -51.92 -0.27 0.43 16 39 H 0.01 0.14 7.42 -51.93 -0.39 -0.24 16 40 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 2.04 6.07 -51.93 -0.32 1.72 16 44 H 0.02 0.38 7.60 -51.93 -0.39 -0.02 16 45 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -29.38 363.83 -11.57 -40.96 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.75 Total: 3.13 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -5.21 Total: -14.33 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.92 Total: -50.57 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.38 -11.57 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413414011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.037 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds