Wall clock time and date at job start Tue Mar 31 2020 10:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 115.55442 * 2 1 4 4 C 1.53076 * 117.49548 * 145.73265 * 2 1 3 5 5 C 1.52995 * 59.98424 * 107.48157 * 4 2 1 6 6 H 1.09003 * 117.49868 * 107.50231 * 5 4 2 7 7 C 1.50706 * 117.50030 * 252.49577 * 5 4 2 8 8 N 1.30972 * 126.23830 * 8.43995 * 7 5 4 9 9 N 1.28678 * 110.05432 * 179.87492 * 8 7 5 10 10 C 1.31693 * 109.38703 * 0.39139 * 9 8 7 11 11 C 1.46555 * 132.90693 * 179.79815 * 10 9 8 12 12 C 1.35047 * 119.51754 * 179.97438 * 11 10 9 13 13 C 1.46945 * 119.43568 * 0.02562 * 12 11 10 14 14 N 1.30679 * 120.09443 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99948 * 353.48535 * 14 13 12 16 16 C 1.53001 * 109.47516 * 114.22795 * 15 14 13 17 17 C 1.53001 * 109.47209 * 300.00539 * 16 15 14 18 18 C 1.53007 * 109.46548 * 60.00338 * 16 15 14 19 19 C 1.50697 * 109.47259 * 180.02562 * 16 15 14 20 20 H 1.07994 * 120.00393 * 0.02562 * 19 16 15 21 21 C 1.37883 * 119.99599 * 180.02562 * 19 16 15 22 22 N 1.31510 * 120.00321 * 359.97438 * 21 19 16 23 23 Si 1.86806 * 119.99581 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47176 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46894 * 119.99784 * 23 21 19 26 26 H 1.48496 * 109.46680 * 239.99626 * 23 21 19 27 27 N 1.38161 * 119.81855 * 359.97438 * 13 12 11 28 28 H 0.97003 * 119.82953 * 180.02562 * 27 13 12 29 29 N 1.35016 * 126.23880 * 188.74841 * 7 5 4 30 30 H 1.09003 * 109.47141 * 205.67510 * 1 2 3 31 31 H 1.09011 * 109.46907 * 325.66811 * 1 2 3 32 32 H 1.08994 * 109.47624 * 85.66818 * 1 2 3 33 33 H 1.09005 * 117.49304 * 359.97438 * 4 2 1 34 34 H 1.09001 * 117.51501 * 214.96300 * 4 2 1 35 35 H 1.07997 * 120.24627 * 359.95860 * 11 10 9 36 36 H 1.07996 * 120.28156 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47460 * 234.23623 * 15 14 13 38 38 H 1.09011 * 109.46990 * 354.22920 * 15 14 13 39 39 H 1.09004 * 109.46948 * 59.99481 * 17 16 15 40 40 H 1.08993 * 109.47012 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.46790 * 299.99771 * 17 16 15 42 42 H 1.08998 * 109.46840 * 60.00144 * 18 16 15 43 43 H 1.09003 * 109.46938 * 180.02562 * 18 16 15 44 44 H 1.09002 * 109.47385 * 299.99768 * 18 16 15 45 45 H 0.96996 * 120.00065 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2367 -1.1222 0.7645 5 6 2.2363 -1.1207 -0.7654 6 1 3.1714 -0.8747 -1.2687 7 6 1.3719 -2.1399 -1.4621 8 7 0.4977 -2.9321 -0.8932 9 7 -0.0670 -3.6747 -1.7795 10 6 0.4308 -3.3947 -2.9661 11 6 0.1684 -3.9222 -4.3080 12 6 0.8509 -3.4270 -5.3628 13 6 1.8458 -2.3675 -5.1462 14 7 2.5139 -1.8793 -6.1576 15 6 2.3776 -2.4829 -7.4855 16 6 1.7127 -1.4836 -8.4343 17 6 0.3285 -1.1140 -7.8974 18 6 2.5746 -0.2233 -8.5331 19 6 1.5719 -2.1049 -9.8000 20 1 1.9212 -3.1119 -9.9738 21 6 0.9970 -1.3875 -10.8276 22 7 0.5711 -0.1615 -10.6159 23 14 0.8218 -2.1579 -12.5204 24 1 1.3742 -3.5361 -12.4966 25 1 -0.6141 -2.2060 -12.8961 26 1 1.5665 -1.3436 -13.5142 27 7 2.0729 -1.8888 -3.8702 28 1 2.7293 -1.1891 -3.7271 29 7 1.3615 -2.4067 -2.7856 30 1 -0.3633 -0.9262 0.4453 31 1 -0.3633 0.8487 0.5797 32 1 -0.3634 0.0776 -1.0246 33 1 1.6113 -1.8597 1.2676 34 1 3.1719 -0.8771 1.2679 35 1 -0.5653 -4.7015 -4.4523 36 1 0.6671 -3.8064 -6.3571 37 1 3.3637 -2.7463 -7.8679 38 1 1.7636 -3.3809 -7.4151 39 1 0.4300 -0.6649 -6.9094 40 1 -0.1450 -0.4018 -8.5731 41 1 -0.2855 -2.0119 -7.8270 42 1 3.5608 -0.4867 -8.9155 43 1 2.1008 0.4889 -9.2087 44 1 2.6761 0.2259 -7.5451 45 1 0.1664 0.3430 -11.3387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413414011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:17 Heat of formation + Delta-G solvation = 173.672937 kcal Electronic energy + Delta-G solvation = -26229.949660 eV Core-core repulsion = 22672.457944 eV Total energy + Delta-G solvation = -3557.491716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.49300 -40.05856 -38.85684 -38.08608 -35.77306 -34.63323 -33.24857 -31.68533 -30.79559 -29.47482 -27.58341 -27.35550 -26.75093 -25.63482 -24.76774 -23.47335 -22.32363 -21.51988 -20.68084 -19.40785 -18.95080 -18.01676 -17.84663 -17.41810 -16.78489 -16.72985 -16.67080 -15.68022 -15.36671 -14.90859 -14.53697 -14.28692 -14.16730 -14.03367 -13.94600 -13.49217 -13.31393 -13.18273 -13.13684 -12.99079 -12.74413 -12.55464 -12.51387 -12.35740 -12.24732 -12.08818 -11.96434 -11.79636 -11.39050 -11.33336 -11.14585 -11.06882 -10.76214 -10.38591 -10.10248 -9.83357 -9.05787 -7.97587 -6.15752 -0.43857 -0.17228 0.56148 1.41646 1.43112 1.47378 1.56076 2.10832 2.12693 2.47222 2.71687 2.79381 3.22674 3.25362 3.37130 3.52730 3.69098 3.92073 3.96059 3.99571 4.16978 4.33797 4.41896 4.59422 4.66554 4.72713 4.75839 4.80497 4.83795 4.87299 4.98254 5.00042 5.03237 5.04077 5.15431 5.15757 5.21532 5.34851 5.39873 5.50522 5.67914 5.70208 5.86729 6.01349 6.14765 6.28041 6.46076 6.89222 7.00557 7.26947 7.52989 9.00674 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.002926 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.688458 B = 9567.879794 C = 9986.113908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 H 0.141 0.859 4 C -0.127 4.127 5 C -0.116 4.116 6 H 0.144 0.856 7 C 0.227 3.773 8 N -0.287 5.287 9 N -0.272 5.272 10 C 0.167 3.833 11 C -0.029 4.029 12 C -0.143 4.143 13 C 0.394 3.606 14 N -0.565 5.565 15 C 0.084 3.916 16 C 0.066 3.934 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.022 3.978 22 N -0.907 5.907 23 Si 0.946 3.054 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.287 1.287 27 N -0.496 5.496 28 H 0.445 0.555 29 N -0.254 5.254 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.194 0.806 36 H 0.178 0.822 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.011 0.989 40 H 0.052 0.948 41 H 0.026 0.974 42 H 0.016 0.984 43 H 0.049 0.951 44 H 0.023 0.977 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -2.233 19.959 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 H 0.158 0.842 4 C -0.165 4.165 5 C -0.136 4.136 6 H 0.162 0.838 7 C -0.038 4.038 8 N -0.130 5.130 9 N -0.116 5.116 10 C -0.095 4.095 11 C -0.053 4.053 12 C -0.169 4.169 13 C 0.118 3.882 14 N -0.288 5.288 15 C -0.045 4.045 16 C 0.065 3.935 17 C -0.170 4.170 18 C -0.167 4.167 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.177 4.177 22 N -0.546 5.546 23 Si 0.773 3.227 24 H -0.190 1.190 25 H -0.211 1.211 26 H -0.213 1.213 27 N -0.236 5.236 28 H 0.292 0.708 29 N -0.029 5.029 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.211 0.789 36 H 0.195 0.805 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.456 -2.128 20.671 20.925 hybrid contribution 0.228 0.121 -2.379 2.393 sum 2.684 -2.007 18.292 18.596 Atomic orbital electron populations 1.21397 0.93385 1.02952 1.00722 1.22647 0.95293 0.94935 1.01167 0.84170 1.23327 1.03913 1.00171 0.89064 1.20640 0.99143 0.97472 0.96349 0.83818 1.24266 1.01003 1.01333 0.77217 1.74491 1.09025 1.06816 1.22678 1.74664 1.21357 1.20156 0.95455 1.23720 0.93798 0.93940 0.98035 1.21598 1.00032 0.99689 0.84006 1.23295 0.95961 0.96161 1.01491 1.19987 0.93490 0.90891 0.83816 1.71767 1.27878 1.29012 1.00155 1.22221 1.00174 0.96472 0.85616 1.18168 0.91520 0.91953 0.91849 1.21586 0.99000 0.99533 0.96862 1.21522 0.97448 0.99782 0.97997 1.21442 1.39200 1.00236 0.95262 0.92569 1.25559 0.95233 0.95211 1.01672 1.69985 1.41263 1.10694 1.32632 0.85686 0.77393 0.78878 0.80721 1.19030 1.21072 1.21336 1.42851 1.41897 1.43754 0.95145 0.70848 1.45191 1.27727 1.27794 1.02168 0.92551 0.90022 0.94896 0.88222 0.84763 0.78892 0.80487 0.91182 0.92957 0.97017 0.92873 0.95444 0.96433 0.93204 0.95780 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.13 71.98 0.66 -1.55 16 2 C -0.12 -1.61 6.41 -10.77 -0.07 -1.68 16 3 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.13 -1.55 9.79 30.62 0.30 -1.25 16 5 C -0.12 -1.85 6.33 -11.54 -0.07 -1.93 16 6 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 7 C 0.23 5.51 6.92 138.00 0.96 6.46 16 8 N -0.29 -8.08 10.99 -50.20 -0.55 -8.63 16 9 N -0.27 -8.22 12.29 -51.93 -0.64 -8.86 16 10 C 0.17 4.67 8.17 135.92 1.11 5.78 16 11 C -0.03 -0.67 10.29 23.71 0.24 -0.43 16 12 C -0.14 -3.78 9.32 23.82 0.22 -3.56 16 13 C 0.39 11.80 7.66 135.92 1.04 12.84 16 14 N -0.56 -19.76 9.15 -339.45 -3.11 -22.87 16 15 C 0.08 3.26 5.02 86.38 0.43 3.69 16 16 C 0.07 3.06 0.57 -52.93 -0.03 3.03 16 17 C -0.11 -5.19 8.08 71.98 0.58 -4.61 16 18 C -0.11 -5.30 8.09 71.98 0.58 -4.72 16 19 C -0.52 -26.67 8.01 25.60 0.21 -26.46 16 20 H 0.06 2.80 7.74 -2.91 -0.02 2.77 16 21 C 0.02 1.16 5.15 84.66 0.44 1.60 16 22 N -0.91 -49.68 9.35 21.45 0.20 -49.48 16 23 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 27 N -0.50 -12.80 6.77 -51.55 -0.35 -13.15 16 28 H 0.45 9.77 8.95 -213.59 -1.91 7.86 16 29 N -0.25 -6.67 3.99 -180.13 -0.72 -7.39 16 30 H 0.06 1.14 7.22 -2.39 -0.02 1.12 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.52 7.82 -2.38 -0.02 1.50 16 34 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.18 4.51 5.89 -2.91 -0.02 4.49 16 37 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.05 1.84 5.21 -2.38 -0.01 1.83 16 39 H 0.01 0.49 7.42 -2.38 -0.02 0.47 16 40 H 0.05 2.79 6.07 -2.39 -0.01 2.78 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.05 2.67 6.07 -2.39 -0.01 2.65 16 44 H 0.02 1.08 7.60 -2.39 -0.02 1.06 16 45 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -63.60 363.83 2.57 -61.03 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.89 Total: 18.31 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 6.60 Total: -12.78 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -5.16 Total: -110.38 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -63.60 2.57 -61.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413414011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.706 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds