Wall clock time and date at job start Tue Mar 31 2020 12:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48491 * 109.47574 * 274.66485 * 3 2 1 5 5 H 1.48501 * 109.47207 * 34.67106 * 3 2 1 6 6 H 1.48500 * 109.46772 * 154.66386 * 3 2 1 7 7 C 1.39943 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 162.23082 * 7 2 1 9 9 C 1.41401 * 120.00084 * 342.22950 * 7 2 1 10 10 C 1.40713 * 120.24255 * 155.28737 * 9 7 2 11 11 C 1.37623 * 119.74001 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25119 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.74681 * 180.02562 * 12 11 10 14 14 N 1.46898 * 109.47002 * 90.00398 * 13 12 11 15 15 C 1.46850 * 110.99843 * 169.99861 * 14 13 12 16 16 C 1.53036 * 109.52331 * 174.16110 * 15 14 13 17 17 C 1.53115 * 109.27967 * 59.17516 * 16 15 14 18 18 O 1.42902 * 109.52258 * 182.44099 * 17 16 15 19 19 C 1.42899 * 114.00014 * 209.99846 * 18 17 16 20 20 C 1.53776 * 113.61689 * 249.13488 * 19 18 17 21 21 C 1.53955 * 87.02239 * 220.05215 * 20 19 18 22 22 C 1.53775 * 87.11123 * 25.36310 * 21 20 19 23 23 C 1.53113 * 109.16247 * 302.34662 * 17 16 15 24 24 C 1.46849 * 111.00301 * 45.78586 * 14 13 12 25 25 C 1.38635 * 120.49927 * 0.29617 * 12 11 10 26 26 C 1.37618 * 120.24618 * 359.45368 * 25 12 11 27 27 H 0.96992 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.13200 * 359.97438 * 10 9 7 29 29 H 1.08006 * 119.87011 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.47695 * 329.99969 * 13 12 11 31 31 H 1.09006 * 109.46839 * 210.00114 * 13 12 11 32 32 H 1.08997 * 109.46352 * 54.14379 * 15 14 13 33 33 H 1.09000 * 109.46344 * 294.17309 * 15 14 13 34 34 H 1.09006 * 109.50310 * 299.23704 * 16 15 14 35 35 H 1.08996 * 109.50633 * 179.12123 * 16 15 14 36 36 H 1.08999 * 109.52281 * 62.25725 * 17 16 15 37 37 H 1.09001 * 112.85096 * 20.34057 * 19 18 17 38 38 H 1.09004 * 113.61583 * 334.56957 * 20 19 18 39 39 H 1.09002 * 113.61361 * 105.47324 * 20 19 18 40 40 H 1.09001 * 113.53619 * 270.81469 * 21 20 19 41 41 H 1.09003 * 113.66719 * 139.93525 * 21 20 19 42 42 H 1.09001 * 113.61577 * 220.08946 * 22 21 20 43 43 H 1.09007 * 113.69081 * 89.19950 * 22 21 20 44 44 H 1.09003 * 109.50499 * 177.59433 * 23 17 16 45 45 H 1.08997 * 109.50620 * 297.71312 * 23 17 16 46 46 H 1.09000 * 109.46170 * 305.85628 * 24 14 13 47 47 H 1.09002 * 109.45957 * 65.82189 * 24 14 13 48 48 H 1.08001 * 119.87460 * 179.69732 * 25 12 11 49 49 H 1.08006 * 120.12588 * 180.26912 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1035 -1.3953 5 1 1.4925 2.6222 0.7965 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2119 -0.0005 8 1 3.0494 -1.2342 -0.2860 9 6 1.3517 -2.4075 0.3727 10 6 1.8220 -3.6492 -0.0931 11 6 1.1750 -4.8064 0.2762 12 6 0.0643 -4.7518 1.1041 13 6 -0.6352 -6.0260 1.5018 14 7 -0.0405 -6.5448 2.7408 15 6 -0.8419 -7.6471 3.2878 16 6 -0.1194 -8.2564 4.4914 17 6 0.0901 -7.1757 5.5557 18 8 0.8146 -7.7251 6.6581 19 6 0.5080 -7.1187 7.9152 20 6 1.6615 -6.2820 8.4932 21 6 1.2846 -6.8601 9.8694 22 6 0.6923 -8.0624 9.1155 23 6 0.8856 -6.0179 4.9465 24 6 0.1340 -5.4734 3.7298 25 6 -0.4111 -3.5335 1.5643 26 6 0.2232 -2.3641 1.2121 27 1 -0.4850 0.8400 0.0004 28 1 2.6868 -3.6940 -0.7384 29 1 1.5344 -5.7607 -0.0797 30 1 -0.5237 -6.7647 0.7082 31 1 -1.6940 -5.8238 1.6639 32 1 -0.9798 -8.4106 2.5223 33 1 -1.8144 -7.2680 3.6019 34 1 0.8475 -8.6481 4.1754 35 1 -0.7217 -9.0643 4.9068 36 1 -0.8777 -6.8112 5.9001 37 1 -0.4499 -6.5986 7.9119 38 1 2.6455 -6.5941 8.1432 39 1 1.5039 -5.2065 8.4124 40 1 0.5396 -6.2680 10.4011 41 1 2.1454 -7.1137 10.4882 42 1 -0.2467 -8.4221 9.5363 43 1 1.4097 -8.8630 8.9354 44 1 1.0012 -5.2264 5.6870 45 1 1.8683 -6.3744 4.6376 46 1 0.7048 -4.6582 3.2851 47 1 -0.8431 -5.1044 4.0417 48 1 -1.2800 -3.5024 2.2049 49 1 -0.1462 -1.4164 1.5753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419294782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:46 Heat of formation + Delta-G solvation = -14.688019 kcal Electronic energy + Delta-G solvation = -26161.948013 eV Core-core repulsion = 22667.535946 eV Total energy + Delta-G solvation = -3494.412067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.78135 -38.72323 -37.38532 -35.85623 -33.86124 -32.16742 -30.76067 -29.67231 -29.25868 -26.65196 -25.84624 -25.01941 -24.00272 -22.85951 -22.09178 -20.98860 -20.17942 -19.72213 -19.29019 -17.30453 -17.27349 -16.08282 -15.47580 -15.33808 -14.92055 -14.75859 -14.56601 -14.24223 -13.99008 -13.55752 -13.43850 -13.20891 -12.78586 -12.63515 -12.50968 -12.36372 -12.06472 -11.92656 -11.72099 -11.54837 -11.51739 -11.22352 -11.05945 -11.02719 -10.95808 -10.83357 -10.63692 -10.54243 -10.40825 -10.33572 -10.24818 -9.56252 -9.39135 -9.30969 -9.10980 -7.93770 -7.43053 -7.28149 -6.77833 -4.35807 2.71936 3.05358 3.07192 3.09918 3.17243 3.59689 3.91816 4.29175 4.39859 4.42950 4.65735 4.67234 4.68613 4.88203 4.98074 5.12152 5.17339 5.34478 5.45256 5.49266 5.57426 5.58062 5.63688 5.69087 5.71916 5.74228 5.79238 5.86841 5.89445 5.97332 6.03715 6.08970 6.12380 6.24291 6.28949 6.36883 6.41802 6.48400 6.55600 6.94258 7.06678 7.25460 7.30197 7.36837 7.49567 7.52192 7.61220 7.88564 8.04738 8.12751 8.29612 8.62862 8.88818 8.96724 10.16596 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002849 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.373994 B = 9823.994843 C =11140.987595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.229 4.229 11 C -0.068 4.068 12 C -0.215 4.215 13 C 0.120 3.880 14 N -0.533 5.533 15 C 0.057 3.943 16 C -0.110 4.110 17 C 0.090 3.910 18 O -0.368 6.368 19 C 0.063 3.937 20 C -0.158 4.158 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.134 4.134 24 C 0.058 3.942 25 C -0.094 4.094 26 C -0.166 4.166 27 H 0.280 0.720 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.023 0.977 48 H 0.081 0.919 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -11.337 14.004 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.248 4.248 11 C -0.087 4.087 12 C -0.217 4.217 13 C -0.006 4.006 14 N -0.258 5.258 15 C -0.071 4.071 16 C -0.148 4.148 17 C 0.032 3.968 18 O -0.287 6.287 19 C 0.005 3.995 20 C -0.195 4.195 21 C -0.180 4.180 22 C -0.175 4.175 23 C -0.172 4.172 24 C -0.069 4.069 25 C -0.113 4.113 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.041 0.959 48 H 0.100 0.900 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.659 -11.517 13.848 18.088 hybrid contribution -0.725 1.404 0.153 1.588 sum -2.384 -10.113 14.001 17.435 Atomic orbital electron populations 1.69830 1.07592 1.29155 1.35287 1.25911 0.94702 1.01306 0.92223 0.86341 0.80821 0.80770 0.79059 1.19579 1.20065 1.18397 1.19603 0.98109 0.91294 1.40155 0.90472 1.17623 0.90997 0.92035 0.88295 1.20976 1.03898 0.92942 1.07028 1.20344 0.94912 0.96340 0.97114 1.18851 1.01827 0.92325 1.08684 1.20734 0.94479 0.94990 0.90413 1.62113 1.49167 1.09450 1.05055 1.22024 0.94122 0.94825 0.96159 1.21629 1.02093 0.97089 0.94011 1.22291 0.93697 0.94104 0.86670 1.87955 1.65531 1.60427 1.14740 1.23765 0.97443 0.94834 0.83479 1.23527 1.00255 0.99975 0.95783 1.22691 1.01160 0.97766 0.96414 1.23205 1.01606 0.97650 0.95069 1.22111 1.00799 0.97260 0.97061 1.22115 0.98673 0.94811 0.91348 1.20516 0.98312 0.92863 0.99594 1.21266 0.99431 0.96591 1.01235 0.90929 0.89090 0.89360 0.91574 0.95908 0.90602 0.95500 0.90264 0.91525 0.92906 0.89917 0.89192 0.91305 0.90157 0.90884 0.91304 0.89243 0.91909 0.90399 0.88237 0.95893 0.90044 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.39 10.97 55.55 0.61 -19.78 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.11 2.99 5.57 -106.82 -0.60 2.39 16 10 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 11 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 12 C -0.22 -4.57 4.13 -104.33 -0.43 -5.00 16 13 C 0.12 2.12 5.42 -4.98 -0.03 2.09 16 14 N -0.53 -8.63 4.80 -236.11 -1.13 -9.77 16 15 C 0.06 0.75 5.42 -3.83 -0.02 0.73 16 16 C -0.11 -1.35 5.75 -26.65 -0.15 -1.51 16 17 C 0.09 1.14 2.67 -26.61 -0.07 1.07 16 18 O -0.37 -4.69 10.00 -35.23 -0.35 -5.04 16 19 C 0.06 0.65 4.26 -25.92 -0.11 0.54 16 20 C -0.16 -1.51 7.93 -25.83 -0.20 -1.72 16 21 C -0.14 -1.11 8.09 -25.83 -0.21 -1.32 16 22 C -0.14 -1.19 7.91 -25.92 -0.21 -1.39 16 23 C -0.13 -1.92 5.72 -26.65 -0.15 -2.07 16 24 C 0.06 0.95 4.58 -3.83 -0.02 0.94 16 25 C -0.09 -2.13 7.77 -39.66 -0.31 -2.43 16 26 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 27 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.02 0.39 8.02 -51.93 -0.42 -0.02 16 32 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.64 7.43 -51.93 -0.39 0.25 16 37 H 0.08 0.80 7.47 -51.93 -0.39 0.41 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.10 1.93 5.65 -51.93 -0.29 1.64 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 49 H 0.12 3.07 6.18 -52.48 -0.32 2.74 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -26.80 383.28 -12.71 -39.51 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.54 Total: 6.66 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: -4.04 Total: -30.89 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: -0.52 Total: -29.55 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.35 Total: -5.04 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -26.80 -12.71 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419294782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.821 kcal (2) G-P(sol) polarization free energy of solvation -26.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds