Wall clock time and date at job start Tue Mar 31 2020 12:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48491 * 109.47574 * 274.66485 * 3 2 1 5 5 H 1.48501 * 109.47207 * 34.67106 * 3 2 1 6 6 H 1.48500 * 109.46772 * 154.66386 * 3 2 1 7 7 C 1.39943 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 162.23082 * 7 2 1 9 9 C 1.41401 * 120.00084 * 342.22950 * 7 2 1 10 10 C 1.40713 * 120.24255 * 155.28737 * 9 7 2 11 11 C 1.37623 * 119.74001 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25119 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.74681 * 180.02562 * 12 11 10 14 14 N 1.46898 * 109.47002 * 90.00398 * 13 12 11 15 15 C 1.46850 * 110.99843 * 169.99861 * 14 13 12 16 16 C 1.53036 * 109.52331 * 174.16110 * 15 14 13 17 17 C 1.53115 * 109.27967 * 59.17516 * 16 15 14 18 18 O 1.42902 * 109.52258 * 182.44099 * 17 16 15 19 19 C 1.42899 * 114.00014 * 209.99846 * 18 17 16 20 20 C 1.53776 * 113.61689 * 249.13488 * 19 18 17 21 21 C 1.53955 * 87.02239 * 220.05215 * 20 19 18 22 22 C 1.53775 * 87.11123 * 25.36310 * 21 20 19 23 23 C 1.53113 * 109.16247 * 302.34662 * 17 16 15 24 24 C 1.46849 * 111.00301 * 45.78586 * 14 13 12 25 25 C 1.38635 * 120.49927 * 0.29617 * 12 11 10 26 26 C 1.37618 * 120.24618 * 359.45368 * 25 12 11 27 27 H 0.96992 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.13200 * 359.97438 * 10 9 7 29 29 H 1.08006 * 119.87011 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.47695 * 329.99969 * 13 12 11 31 31 H 1.09006 * 109.46839 * 210.00114 * 13 12 11 32 32 H 1.08997 * 109.46352 * 54.14379 * 15 14 13 33 33 H 1.09000 * 109.46344 * 294.17309 * 15 14 13 34 34 H 1.09006 * 109.50310 * 299.23704 * 16 15 14 35 35 H 1.08996 * 109.50633 * 179.12123 * 16 15 14 36 36 H 1.08999 * 109.52281 * 62.25725 * 17 16 15 37 37 H 1.09001 * 112.85096 * 20.34057 * 19 18 17 38 38 H 1.09004 * 113.61583 * 334.56957 * 20 19 18 39 39 H 1.09002 * 113.61361 * 105.47324 * 20 19 18 40 40 H 1.09001 * 113.53619 * 270.81469 * 21 20 19 41 41 H 1.09003 * 113.66719 * 139.93525 * 21 20 19 42 42 H 1.09001 * 113.61577 * 220.08946 * 22 21 20 43 43 H 1.09007 * 113.69081 * 89.19950 * 22 21 20 44 44 H 1.09003 * 109.50499 * 177.59433 * 23 17 16 45 45 H 1.08997 * 109.50620 * 297.71312 * 23 17 16 46 46 H 1.09000 * 109.46170 * 305.85628 * 24 14 13 47 47 H 1.09002 * 109.45957 * 65.82189 * 24 14 13 48 48 H 1.08001 * 119.87460 * 179.69732 * 25 12 11 49 49 H 1.08006 * 120.12588 * 180.26912 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1035 -1.3953 5 1 1.4925 2.6222 0.7965 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2119 -0.0005 8 1 3.0494 -1.2342 -0.2860 9 6 1.3517 -2.4075 0.3727 10 6 1.8220 -3.6492 -0.0931 11 6 1.1750 -4.8064 0.2762 12 6 0.0643 -4.7518 1.1041 13 6 -0.6352 -6.0260 1.5018 14 7 -0.0405 -6.5448 2.7408 15 6 -0.8419 -7.6471 3.2878 16 6 -0.1194 -8.2564 4.4914 17 6 0.0901 -7.1757 5.5557 18 8 0.8146 -7.7251 6.6581 19 6 0.5080 -7.1187 7.9152 20 6 1.6615 -6.2820 8.4932 21 6 1.2846 -6.8601 9.8694 22 6 0.6923 -8.0624 9.1155 23 6 0.8856 -6.0179 4.9465 24 6 0.1340 -5.4734 3.7298 25 6 -0.4111 -3.5335 1.5643 26 6 0.2232 -2.3641 1.2121 27 1 -0.4850 0.8400 0.0004 28 1 2.6868 -3.6940 -0.7384 29 1 1.5344 -5.7607 -0.0797 30 1 -0.5237 -6.7647 0.7082 31 1 -1.6940 -5.8238 1.6639 32 1 -0.9798 -8.4106 2.5223 33 1 -1.8144 -7.2680 3.6019 34 1 0.8475 -8.6481 4.1754 35 1 -0.7217 -9.0643 4.9068 36 1 -0.8777 -6.8112 5.9001 37 1 -0.4499 -6.5986 7.9119 38 1 2.6455 -6.5941 8.1432 39 1 1.5039 -5.2065 8.4124 40 1 0.5396 -6.2680 10.4011 41 1 2.1454 -7.1137 10.4882 42 1 -0.2467 -8.4221 9.5363 43 1 1.4097 -8.8630 8.9354 44 1 1.0012 -5.2264 5.6870 45 1 1.8683 -6.3744 4.6376 46 1 0.7048 -4.6582 3.2851 47 1 -0.8431 -5.1044 4.0417 48 1 -1.2800 -3.5024 2.2049 49 1 -0.1462 -1.4164 1.5753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419294782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:45 Heat of formation + Delta-G solvation = -27.047174 kcal Electronic energy + Delta-G solvation = -26162.483946 eV Core-core repulsion = 22667.535946 eV Total energy + Delta-G solvation = -3494.948000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.80716 -39.94483 -38.87518 -36.94705 -35.60290 -33.55150 -31.98276 -31.26903 -31.10534 -28.25468 -26.56812 -26.04998 -25.32043 -24.03352 -23.43491 -22.78447 -21.51981 -21.04628 -20.24201 -19.21663 -18.18322 -17.24155 -17.03998 -16.39939 -16.31671 -15.93814 -15.77313 -15.64798 -15.31552 -15.12068 -14.81407 -14.41433 -14.23359 -13.82811 -13.75413 -13.50139 -13.35686 -13.27849 -13.21592 -12.90989 -12.65876 -12.63619 -12.41596 -12.33604 -12.19174 -12.10470 -12.02249 -11.89779 -11.46712 -11.43936 -11.27143 -11.21463 -11.16093 -10.97736 -10.26213 -9.36805 -9.27774 -9.04775 -8.64103 -6.32816 0.93616 1.16502 1.36900 1.47092 1.53067 2.20082 2.66005 2.71689 3.15291 3.67184 3.70051 3.77367 3.86298 3.87231 3.95678 4.00216 4.13784 4.17611 4.29270 4.34163 4.38374 4.46043 4.52122 4.56901 4.62261 4.72120 4.76868 4.83384 4.85403 4.85815 4.93675 5.00929 5.03552 5.04092 5.05113 5.15574 5.16537 5.19993 5.25594 5.30344 5.38885 5.44647 5.48055 5.71629 5.96177 6.10737 6.12964 6.28744 6.34075 6.40530 6.40791 6.70684 6.94959 7.04475 8.32735 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002849 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.373994 B = 9823.994843 C =11140.987595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.072 0.928 9 C 0.081 3.919 10 C -0.246 4.246 11 C -0.073 4.073 12 C -0.199 4.199 13 C 0.124 3.876 14 N -0.542 5.542 15 C 0.058 3.942 16 C -0.105 4.105 17 C 0.094 3.906 18 O -0.381 6.381 19 C 0.050 3.950 20 C -0.165 4.165 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.127 4.127 24 C 0.064 3.936 25 C -0.092 4.092 26 C -0.188 4.188 27 H 0.287 0.713 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.098 0.902 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 -12.752 15.364 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.078 3.922 10 C -0.265 4.265 11 C -0.091 4.091 12 C -0.200 4.200 13 C -0.002 4.002 14 N -0.267 5.267 15 C -0.070 4.070 16 C -0.143 4.143 17 C 0.037 3.963 18 O -0.300 6.300 19 C -0.007 4.007 20 C -0.202 4.202 21 C -0.170 4.170 22 C -0.171 4.171 23 C -0.165 4.165 24 C -0.064 4.064 25 C -0.111 4.111 26 C -0.208 4.208 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.116 0.884 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.607 -12.956 15.216 20.154 hybrid contribution -0.468 1.690 -0.218 1.767 sum -3.075 -11.266 14.998 19.008 Atomic orbital electron populations 1.69877 1.08952 1.30455 1.35913 1.26733 0.95484 1.04432 0.91228 0.85235 0.79205 0.76128 0.79406 1.18691 1.18946 1.18392 1.19824 0.98244 0.92669 1.42446 0.90956 1.17950 0.91940 0.92995 0.89274 1.21168 1.04474 0.93344 1.07534 1.20643 0.94921 0.96604 0.96952 1.19251 1.00760 0.93568 1.06454 1.20695 0.94430 0.93386 0.91705 1.62068 1.50120 1.09832 1.04664 1.22121 0.94033 0.93916 0.96909 1.21595 1.01823 0.97366 0.93495 1.22215 0.93629 0.93502 0.86969 1.87948 1.65920 1.60685 1.15484 1.24054 0.97958 0.95726 0.82986 1.23545 0.99522 0.99879 0.97294 1.22689 1.01695 0.97130 0.95503 1.23186 1.02223 0.97493 0.94189 1.22020 0.99954 0.98182 0.96371 1.21956 0.98381 0.94128 0.91914 1.20695 0.98445 0.92618 0.99310 1.21215 1.00236 0.96952 1.02358 0.90197 0.88873 0.86900 0.90013 0.94963 0.88969 0.94545 0.91412 0.89300 0.91826 0.89053 0.90425 0.91496 0.88831 0.90065 0.89877 0.89806 0.91697 0.92123 0.91849 0.95586 0.88406 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.81 10.97 21.83 0.24 -43.57 16 2 C 0.04 1.84 5.14 85.26 0.44 2.28 16 3 Si 0.98 38.84 29.60 68.60 2.03 40.87 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.50 -27.76 9.05 23.46 0.21 -27.55 16 8 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 9 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 10 C -0.25 -12.38 9.80 22.73 0.22 -12.16 16 11 C -0.07 -3.22 9.67 22.22 0.21 -3.00 16 12 C -0.20 -8.30 4.13 -19.68 -0.08 -8.38 16 13 C 0.12 4.09 5.42 85.56 0.46 4.56 16 14 N -0.54 -16.45 4.80 -900.93 -4.32 -20.77 16 15 C 0.06 1.34 5.42 86.33 0.47 1.81 16 16 C -0.10 -2.29 5.75 30.64 0.18 -2.11 16 17 C 0.09 2.21 2.67 30.67 0.08 2.30 16 18 O -0.38 -9.12 10.00 -148.98 -1.49 -10.61 16 19 C 0.05 0.95 4.26 31.12 0.13 1.09 16 20 C -0.16 -3.00 7.93 31.18 0.25 -2.75 16 21 C -0.13 -1.80 8.09 31.18 0.25 -1.54 16 22 C -0.13 -2.01 7.91 31.12 0.25 -1.77 16 23 C -0.13 -3.56 5.72 30.64 0.18 -3.38 16 24 C 0.06 2.06 4.58 86.32 0.39 2.45 16 25 C -0.09 -4.20 7.77 22.22 0.17 -4.03 16 26 C -0.19 -9.98 8.70 22.73 0.20 -9.78 16 27 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 28 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.08 2.48 8.08 -2.39 -0.02 2.46 16 31 H 0.03 1.02 8.02 -2.38 -0.02 1.00 16 32 H 0.09 1.87 8.12 -2.39 -0.02 1.86 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.37 7.43 -2.39 -0.02 1.35 16 37 H 0.09 1.56 7.47 -2.39 -0.02 1.54 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 2.49 5.65 -2.39 -0.01 2.47 16 47 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.10 4.07 8.06 -2.91 -0.02 4.04 16 49 H 0.10 5.45 6.18 -2.91 -0.02 5.43 16 Total: -1.00 -59.68 383.28 1.25 -58.43 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.90 Total: 33.31 kcal Atomic # 6 Polarization: -61.55 SS G_CDS: 3.90 Total: -57.65 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -4.08 Total: -64.34 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.49 Total: -10.61 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -59.68 1.25 -58.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419294782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -59.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds