Wall clock time and date at job start Tue Mar 31 2020 12:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47036 * 239.99780 * 3 2 1 5 5 H 1.48505 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47112 * 119.99624 * 3 2 1 7 7 C 1.37867 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00568 * 175.10334 * 7 2 1 9 9 C 1.50704 * 120.00140 * 355.38192 * 7 2 1 10 10 C 1.53000 * 115.54954 * 274.94759 * 9 7 2 11 11 N 1.46898 * 109.47426 * 303.89829 * 10 9 7 12 12 C 1.46896 * 111.00402 * 185.26191 * 11 10 9 13 13 C 1.50698 * 109.47465 * 179.97438 * 12 11 10 14 14 C 1.38288 * 119.97264 * 269.72665 * 13 12 11 15 15 C 1.38247 * 120.10984 * 179.72499 * 14 13 12 16 16 C 1.38163 * 120.05638 * 0.54565 * 15 14 13 17 17 C 1.38713 * 119.94347 * 359.73168 * 16 15 14 18 18 O 1.35904 * 120.05577 * 179.97438 * 17 16 15 19 19 C 1.42893 * 116.99738 * 5.46591 * 18 17 16 20 20 C 1.54272 * 110.03363 * 272.86355 * 19 18 17 21 21 C 1.54895 * 104.19551 * 217.10847 * 20 19 18 22 22 C 1.54893 * 102.74717 * 37.94406 * 21 20 19 23 23 C 1.53876 * 110.02936 * 155.70141 * 19 18 17 24 24 C 1.38121 * 119.97225 * 89.99908 * 13 12 11 25 25 C 1.52998 * 117.50147 * 129.28087 * 9 7 2 26 26 C 1.53000 * 117.49895 * 60.61943 * 9 7 2 27 27 H 0.97000 * 120.00083 * 5.00632 * 1 2 3 28 28 H 1.09006 * 109.47121 * 63.89262 * 10 9 7 29 29 H 1.08995 * 109.47236 * 183.89347 * 10 9 7 30 30 H 1.00906 * 111.00082 * 61.30354 * 11 10 9 31 31 H 1.09005 * 109.47152 * 299.99712 * 12 11 10 32 32 H 1.09001 * 109.47278 * 59.99486 * 12 11 10 33 33 H 1.08003 * 119.94219 * 359.97438 * 14 13 12 34 34 H 1.07995 * 119.97347 * 180.25728 * 15 14 13 35 35 H 1.07997 * 120.02788 * 179.75240 * 16 15 14 36 36 H 1.08997 * 110.02241 * 34.30867 * 19 18 17 37 37 H 1.09003 * 110.48619 * 335.78671 * 20 19 18 38 38 H 1.08996 * 110.48945 * 98.43043 * 20 19 18 39 39 H 1.08991 * 110.75617 * 279.62763 * 21 20 19 40 40 H 1.09005 * 110.75495 * 156.25206 * 21 20 19 41 41 H 1.09001 * 110.47848 * 203.37889 * 22 21 20 42 42 H 1.08992 * 110.60037 * 80.79400 * 22 21 20 43 43 H 1.09009 * 110.02904 * 238.56394 * 23 19 18 44 44 H 1.09000 * 110.03370 * 359.94769 * 23 19 18 45 45 H 1.08007 * 120.03070 * 359.97438 * 24 13 12 46 46 H 1.09002 * 117.49882 * 359.97438 * 25 9 7 47 47 H 1.09001 * 117.50051 * 145.02145 * 25 9 7 48 48 H 1.09000 * 117.49541 * 214.98036 * 26 9 7 49 49 H 1.08993 * 117.49900 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0793 9 6 1.2547 -2.4970 0.1062 10 6 0.9193 -2.9519 1.5280 11 7 2.1541 -3.0366 2.3191 12 6 1.8875 -3.5898 3.6536 13 6 3.1748 -3.6619 4.4339 14 6 3.9545 -4.8025 4.3764 15 6 5.1388 -4.8696 5.0865 16 6 5.5405 -3.8009 5.8647 17 6 4.7572 -2.6579 5.9286 18 8 5.1499 -1.6056 6.6938 19 6 6.4361 -1.6957 7.3097 20 6 6.3216 -2.4152 8.6696 21 6 7.3329 -1.6731 9.5783 22 6 7.1772 -0.1986 9.1301 23 6 6.9801 -0.2864 7.6026 24 6 3.5719 -2.5909 5.2104 25 6 1.5728 -3.5809 -0.9257 26 6 0.2450 -2.8224 -0.9963 27 1 -0.4850 0.8368 -0.0733 28 1 0.2412 -2.2336 1.9889 29 1 0.4422 -3.9313 1.4931 30 1 2.6043 -2.1359 2.3844 31 1 1.1797 -2.9479 4.1782 32 1 1.4664 -4.5903 3.5548 33 1 3.6398 -5.6408 3.7724 34 1 5.7481 -5.7598 5.0367 35 1 6.4637 -3.8554 6.4225 36 1 7.1248 -2.2339 6.6586 37 1 5.3110 -2.3210 9.0671 38 1 6.5971 -3.4650 8.5702 39 1 8.3475 -2.0270 9.3965 40 1 7.0649 -1.7878 10.6287 41 1 8.0772 0.3690 9.3667 42 1 6.3058 0.2556 9.6017 43 1 7.9333 -0.1410 7.0942 44 1 6.2634 0.4663 7.2740 45 1 2.9606 -1.7018 5.2582 46 1 2.3242 -3.3514 -1.6813 47 1 1.5428 -4.6180 -0.5918 48 1 -0.6580 -3.3610 -0.7088 49 1 0.1228 -2.0940 -1.7978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430015964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:16 Heat of formation + Delta-G solvation = -3.120112 kcal Electronic energy + Delta-G solvation = -25745.121032 eV Core-core repulsion = 22251.210587 eV Total energy + Delta-G solvation = -3493.910445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40624 -38.49311 -36.93234 -36.29398 -34.28561 -31.86487 -30.96435 -30.06967 -29.06199 -28.02592 -26.34618 -25.19948 -23.16749 -22.40142 -21.63130 -21.06681 -20.87195 -19.88175 -19.04258 -18.04132 -16.39305 -15.94849 -15.89043 -15.61332 -15.34521 -14.67276 -14.57437 -14.39754 -14.20783 -13.79291 -13.69578 -13.62634 -13.27551 -12.78317 -12.56472 -12.29282 -11.97543 -11.84197 -11.49123 -11.42983 -11.37463 -11.35599 -11.21937 -11.01221 -10.97059 -10.89151 -10.83312 -10.65150 -10.50940 -10.41768 -10.05168 -9.31598 -8.81746 -8.74479 -8.35645 -8.06656 -7.97771 -7.44412 -5.97508 -4.04445 1.45000 1.61128 3.16103 3.32946 3.37733 3.41109 3.88622 4.18550 4.23056 4.43634 4.55119 4.81413 4.89789 4.96381 5.07814 5.10923 5.15492 5.23467 5.24840 5.28819 5.30992 5.45728 5.50698 5.51124 5.56245 5.62533 5.68843 5.74892 5.81863 5.84128 5.91492 5.96076 6.05165 6.18610 6.25151 6.42391 6.50132 6.55798 6.60253 6.82440 6.86395 6.88308 6.92677 6.97117 7.24117 7.51602 7.53036 7.64218 7.92721 8.03116 8.31876 8.55564 8.99145 9.61012 11.09584 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013932 B = 0.003044 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.215860 B = 9196.844898 C =10713.813835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.048 3.952 10 C 0.105 3.895 11 N -0.672 5.672 12 C 0.093 3.907 13 C -0.029 4.029 14 C -0.136 4.136 15 C -0.085 4.085 16 C -0.216 4.216 17 C 0.128 3.872 18 O -0.309 6.309 19 C 0.080 3.920 20 C -0.148 4.148 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.146 4.146 25 C -0.204 4.204 26 C -0.156 4.156 27 H 0.259 0.741 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.351 0.649 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.160 -5.962 17.920 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.048 3.952 10 C -0.023 4.023 11 N -0.304 5.304 12 C -0.036 4.036 13 C -0.030 4.030 14 C -0.154 4.154 15 C -0.103 4.103 16 C -0.235 4.235 17 C 0.083 3.917 18 O -0.224 6.224 19 C 0.024 3.976 20 C -0.185 4.185 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.165 4.165 25 C -0.241 4.241 26 C -0.195 4.195 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.171 0.829 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.145 0.855 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.060 -6.239 17.753 22.350 hybrid contribution 0.129 1.535 0.304 1.570 sum 12.189 -4.704 18.057 22.288 Atomic orbital electron populations 1.69997 1.05810 1.26600 1.49416 1.24998 0.94787 0.98773 0.94803 0.86757 0.79685 0.83402 0.78766 1.20305 1.21430 1.20120 1.20424 0.92814 0.88728 1.50828 0.92215 1.18725 0.97719 0.92816 0.85961 1.21448 0.89120 0.96969 0.94810 1.60488 1.26381 1.32739 1.10814 1.20913 0.91934 1.00575 0.90221 1.19716 0.96369 0.92660 0.94207 1.20938 0.95185 0.98580 1.00730 1.20877 0.96147 0.97620 0.95642 1.21156 1.01649 0.94782 1.05873 1.18914 0.94209 0.86806 0.91801 1.86159 1.35061 1.39843 1.61292 1.23120 0.83518 0.97534 0.93472 1.22952 1.00993 0.99464 0.95127 1.22445 0.99079 0.95228 0.99339 1.22346 1.01999 0.96780 0.94933 1.22222 1.01361 0.95794 0.96718 1.20364 0.96378 1.00113 0.99670 1.22913 0.99824 0.95785 1.05566 1.22497 0.90810 1.01771 1.04380 0.93113 0.95204 0.94213 0.82907 0.95014 0.90779 0.85833 0.86162 0.85962 0.90601 0.90204 0.91089 0.91254 0.91143 0.91261 0.91198 0.90507 0.89921 0.85501 0.90919 0.91879 0.92360 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 12.65 55.43 0.70 -24.22 16 2 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.49 -13.27 7.99 -34.44 -0.28 -13.55 16 8 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 9 C 0.05 1.20 1.71 -155.66 -0.27 0.93 16 10 C 0.11 2.36 5.60 -3.83 -0.02 2.34 16 11 N -0.67 -13.57 6.42 -115.06 -0.74 -14.31 16 12 C 0.09 1.54 5.80 -4.98 -0.03 1.52 16 13 C -0.03 -0.45 5.39 -104.65 -0.56 -1.01 16 14 C -0.14 -1.90 9.70 -39.56 -0.38 -2.29 16 15 C -0.08 -1.05 10.04 -39.61 -0.40 -1.45 16 16 C -0.22 -2.71 8.80 -39.43 -0.35 -3.06 16 17 C 0.13 1.83 6.63 -39.22 -0.26 1.57 16 18 O -0.31 -4.23 9.70 -19.44 -0.19 -4.42 16 19 C 0.08 0.81 2.80 -25.61 -0.07 0.74 16 20 C -0.15 -1.26 6.14 -25.07 -0.15 -1.41 16 21 C -0.12 -0.83 6.91 -24.73 -0.17 -1.00 16 22 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 23 C -0.12 -1.09 6.61 -25.61 -0.17 -1.26 16 24 C -0.15 -2.28 9.64 -39.43 -0.38 -2.66 16 25 C -0.20 -4.63 9.93 -26.69 -0.27 -4.90 16 26 C -0.16 -3.78 9.17 -26.69 -0.24 -4.02 16 27 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.35 7.65 8.02 -39.29 -0.31 7.34 16 31 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.25 5.39 -52.49 -0.28 0.97 16 36 H 0.08 0.74 6.30 -51.93 -0.33 0.41 16 37 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.07 0.55 7.57 -51.93 -0.39 0.16 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 44 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 45 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 46 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -28.79 394.06 -12.03 -40.82 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.45 Total: 8.77 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -4.27 Total: -28.77 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.04 Total: -38.52 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.19 Total: -4.42 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.79 -12.03 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430015964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.705 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds