Wall clock time and date at job start Tue Mar 31 2020 12:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47036 * 239.99780 * 3 2 1 5 5 H 1.48505 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47112 * 119.99624 * 3 2 1 7 7 C 1.37867 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00568 * 175.10334 * 7 2 1 9 9 C 1.50704 * 120.00140 * 355.38192 * 7 2 1 10 10 C 1.53000 * 115.54954 * 274.94759 * 9 7 2 11 11 N 1.46898 * 109.47426 * 303.89829 * 10 9 7 12 12 C 1.46896 * 111.00402 * 185.26191 * 11 10 9 13 13 C 1.50698 * 109.47465 * 179.97438 * 12 11 10 14 14 C 1.38288 * 119.97264 * 269.72665 * 13 12 11 15 15 C 1.38247 * 120.10984 * 179.72499 * 14 13 12 16 16 C 1.38163 * 120.05638 * 0.54565 * 15 14 13 17 17 C 1.38713 * 119.94347 * 359.73168 * 16 15 14 18 18 O 1.35904 * 120.05577 * 179.97438 * 17 16 15 19 19 C 1.42893 * 116.99738 * 5.46591 * 18 17 16 20 20 C 1.54272 * 110.03363 * 272.86355 * 19 18 17 21 21 C 1.54895 * 104.19551 * 217.10847 * 20 19 18 22 22 C 1.54893 * 102.74717 * 37.94406 * 21 20 19 23 23 C 1.53876 * 110.02936 * 155.70141 * 19 18 17 24 24 C 1.38121 * 119.97225 * 89.99908 * 13 12 11 25 25 C 1.52998 * 117.50147 * 129.28087 * 9 7 2 26 26 C 1.53000 * 117.49895 * 60.61943 * 9 7 2 27 27 H 0.97000 * 120.00083 * 5.00632 * 1 2 3 28 28 H 1.09006 * 109.47121 * 63.89262 * 10 9 7 29 29 H 1.08995 * 109.47236 * 183.89347 * 10 9 7 30 30 H 1.00906 * 111.00082 * 61.30354 * 11 10 9 31 31 H 1.09005 * 109.47152 * 299.99712 * 12 11 10 32 32 H 1.09001 * 109.47278 * 59.99486 * 12 11 10 33 33 H 1.08003 * 119.94219 * 359.97438 * 14 13 12 34 34 H 1.07995 * 119.97347 * 180.25728 * 15 14 13 35 35 H 1.07997 * 120.02788 * 179.75240 * 16 15 14 36 36 H 1.08997 * 110.02241 * 34.30867 * 19 18 17 37 37 H 1.09003 * 110.48619 * 335.78671 * 20 19 18 38 38 H 1.08996 * 110.48945 * 98.43043 * 20 19 18 39 39 H 1.08991 * 110.75617 * 279.62763 * 21 20 19 40 40 H 1.09005 * 110.75495 * 156.25206 * 21 20 19 41 41 H 1.09001 * 110.47848 * 203.37889 * 22 21 20 42 42 H 1.08992 * 110.60037 * 80.79400 * 22 21 20 43 43 H 1.09009 * 110.02904 * 238.56394 * 23 19 18 44 44 H 1.09000 * 110.03370 * 359.94769 * 23 19 18 45 45 H 1.08007 * 120.03070 * 359.97438 * 24 13 12 46 46 H 1.09002 * 117.49882 * 359.97438 * 25 9 7 47 47 H 1.09001 * 117.50051 * 145.02145 * 25 9 7 48 48 H 1.09000 * 117.49541 * 214.98036 * 26 9 7 49 49 H 1.08993 * 117.49900 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0793 9 6 1.2547 -2.4970 0.1062 10 6 0.9193 -2.9519 1.5280 11 7 2.1541 -3.0366 2.3191 12 6 1.8875 -3.5898 3.6536 13 6 3.1748 -3.6619 4.4339 14 6 3.9545 -4.8025 4.3764 15 6 5.1388 -4.8696 5.0865 16 6 5.5405 -3.8009 5.8647 17 6 4.7572 -2.6579 5.9286 18 8 5.1499 -1.6056 6.6938 19 6 6.4361 -1.6957 7.3097 20 6 6.3216 -2.4152 8.6696 21 6 7.3329 -1.6731 9.5783 22 6 7.1772 -0.1986 9.1301 23 6 6.9801 -0.2864 7.6026 24 6 3.5719 -2.5909 5.2104 25 6 1.5728 -3.5809 -0.9257 26 6 0.2450 -2.8224 -0.9963 27 1 -0.4850 0.8368 -0.0733 28 1 0.2412 -2.2336 1.9889 29 1 0.4422 -3.9313 1.4931 30 1 2.6043 -2.1359 2.3844 31 1 1.1797 -2.9479 4.1782 32 1 1.4664 -4.5903 3.5548 33 1 3.6398 -5.6408 3.7724 34 1 5.7481 -5.7598 5.0367 35 1 6.4637 -3.8554 6.4225 36 1 7.1248 -2.2339 6.6586 37 1 5.3110 -2.3210 9.0671 38 1 6.5971 -3.4650 8.5702 39 1 8.3475 -2.0270 9.3965 40 1 7.0649 -1.7878 10.6287 41 1 8.0772 0.3690 9.3667 42 1 6.3058 0.2556 9.6017 43 1 7.9333 -0.1410 7.0942 44 1 6.2634 0.4663 7.2740 45 1 2.9606 -1.7018 5.2582 46 1 2.3242 -3.3514 -1.6813 47 1 1.5428 -4.6180 -0.5918 48 1 -0.6580 -3.3610 -0.7088 49 1 0.1228 -2.0940 -1.7978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430015964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:15 Heat of formation + Delta-G solvation = -16.790379 kcal Electronic energy + Delta-G solvation = -25745.713819 eV Core-core repulsion = 22251.210587 eV Total energy + Delta-G solvation = -3494.503233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36984 -39.50028 -38.63279 -37.23608 -35.76021 -33.95191 -32.18209 -31.10998 -29.72735 -28.79121 -27.99145 -27.06481 -24.65285 -23.45146 -22.83799 -22.60311 -21.66346 -21.06092 -20.66850 -19.07564 -17.89611 -17.29279 -16.96717 -16.65103 -16.60198 -16.17801 -15.91449 -15.77665 -15.52851 -15.23047 -14.92675 -14.48219 -14.36413 -14.24618 -13.92739 -13.42068 -13.21756 -13.05213 -12.99405 -12.83829 -12.79140 -12.72966 -12.35295 -12.29435 -12.10126 -12.05623 -11.97319 -11.94823 -11.62621 -11.51854 -11.36915 -11.20366 -10.83433 -10.37193 -10.01160 -9.75947 -9.12379 -9.08166 -8.07481 -6.19117 0.35952 0.53831 1.40318 1.41840 1.48514 2.24637 2.42515 2.78875 3.19487 3.44044 3.53232 3.58185 3.77828 3.86769 3.90433 3.96103 4.09647 4.22598 4.33349 4.38974 4.43177 4.47114 4.47682 4.54703 4.59516 4.64069 4.70232 4.72386 4.74811 4.82918 4.87991 4.97956 4.99656 5.04206 5.08315 5.10484 5.15509 5.16665 5.21147 5.32432 5.37444 5.40926 5.51156 5.63972 5.72072 5.73589 5.81294 5.88490 6.33945 6.50367 6.54543 6.58919 6.89309 7.48610 8.98867 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013932 B = 0.003044 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.215860 B = 9196.844898 C =10713.813835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.049 0.951 9 C 0.023 3.977 10 C 0.118 3.882 11 N -0.671 5.671 12 C 0.097 3.903 13 C -0.043 4.043 14 C -0.143 4.143 15 C -0.078 4.078 16 C -0.210 4.210 17 C 0.119 3.881 18 O -0.330 6.330 19 C 0.069 3.931 20 C -0.146 4.146 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.170 4.170 25 C -0.181 4.181 26 C -0.161 4.161 27 H 0.258 0.742 28 H 0.000 1.000 29 H 0.057 0.943 30 H 0.338 0.662 31 H 0.025 0.975 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.505 -7.453 19.124 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.011 4.011 11 N -0.301 5.301 12 C -0.032 4.032 13 C -0.043 4.043 14 C -0.162 4.162 15 C -0.096 4.096 16 C -0.229 4.229 17 C 0.074 3.926 18 O -0.245 6.245 19 C 0.014 3.986 20 C -0.183 4.183 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.190 4.190 25 C -0.218 4.218 26 C -0.199 4.199 27 H 0.067 0.933 28 H 0.018 0.982 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.128 0.872 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.416 -7.742 18.964 25.048 hybrid contribution -0.546 1.980 -0.034 2.055 sum 13.870 -5.761 18.930 24.165 Atomic orbital electron populations 1.70099 1.06922 1.27098 1.50473 1.25616 0.95485 1.01584 0.94714 0.85857 0.78552 0.79953 0.78749 1.19857 1.21213 1.19888 1.20633 0.92515 0.90216 1.50418 0.93243 1.18895 0.98371 0.93027 0.87506 1.21224 0.89458 0.96797 0.93618 1.60490 1.25089 1.31746 1.12779 1.20933 0.92939 1.00773 0.88561 1.19616 0.96337 0.93582 0.94793 1.21144 0.95660 0.98216 1.01193 1.21268 0.95581 0.98572 0.94166 1.21468 1.02060 0.93852 1.05474 1.19032 0.94082 0.87736 0.91760 1.86146 1.36900 1.40031 1.61393 1.23459 0.82221 0.98736 0.94208 1.22934 1.00772 1.00198 0.94424 1.22453 0.99279 0.94296 0.99419 1.22355 1.02496 0.97548 0.93480 1.22290 1.01332 0.94542 0.98211 1.20376 0.97434 0.99958 1.01219 1.22897 0.98401 0.96445 1.04092 1.22398 0.92017 1.01914 1.03586 0.93300 0.98188 0.92460 0.84378 0.95690 0.89217 0.84680 0.82741 0.83347 0.89821 0.91793 0.89958 0.89742 0.90178 0.89605 0.91911 0.89175 0.91821 0.87163 0.91218 0.89374 0.91036 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.40 12.65 21.44 0.27 -52.13 16 2 C 0.03 1.44 5.43 84.65 0.46 1.90 16 3 Si 0.94 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.50 -27.46 7.99 25.60 0.20 -27.26 16 8 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 9 C 0.02 1.13 1.71 -52.93 -0.09 1.04 16 10 C 0.12 5.32 5.60 86.30 0.48 5.80 16 11 N -0.67 -27.23 6.42 -517.94 -3.33 -30.55 16 12 C 0.10 3.23 5.80 85.56 0.50 3.73 16 13 C -0.04 -1.32 5.39 -19.88 -0.11 -1.43 16 14 C -0.14 -3.76 9.70 22.28 0.22 -3.55 16 15 C -0.08 -1.71 10.04 22.25 0.22 -1.49 16 16 C -0.21 -4.80 8.80 22.37 0.20 -4.60 16 17 C 0.12 3.38 6.63 22.51 0.15 3.53 16 18 O -0.33 -9.08 9.70 -92.47 -0.90 -9.98 16 19 C 0.07 1.33 2.80 31.32 0.09 1.42 16 20 C -0.15 -2.23 6.14 31.67 0.19 -2.03 16 21 C -0.12 -1.28 6.91 31.89 0.22 -1.06 16 22 C -0.12 -1.53 6.83 31.67 0.22 -1.32 16 23 C -0.13 -2.11 6.61 31.32 0.21 -1.90 16 24 C -0.17 -5.48 9.64 22.37 0.22 -5.26 16 25 C -0.18 -8.03 9.93 30.62 0.30 -7.73 16 26 C -0.16 -7.77 9.17 30.62 0.28 -7.49 16 27 H 0.26 14.36 8.32 -92.71 -0.77 13.58 16 28 H 0.00 -0.01 8.14 -2.38 -0.02 -0.02 16 29 H 0.06 2.34 8.09 -2.39 -0.02 2.32 16 30 H 0.34 15.16 8.02 -89.69 -0.72 14.45 16 31 H 0.02 0.86 8.09 -2.38 -0.02 0.84 16 32 H 0.09 2.69 8.08 -2.39 -0.02 2.67 16 33 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.15 2.54 5.39 -2.91 -0.02 2.53 16 36 H 0.08 1.44 6.30 -2.39 -0.02 1.43 16 37 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.08 1.06 7.57 -2.39 -0.02 1.04 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.06 1.30 7.95 -2.39 -0.02 1.28 16 45 H 0.11 3.76 8.06 -2.91 -0.02 3.73 16 46 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 48 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 49 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -62.51 394.06 2.23 -60.28 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.20 Total: 33.87 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 3.96 Total: -47.71 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -3.05 Total: -82.68 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.90 Total: -9.98 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -62.51 2.23 -60.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430015964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.486 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds