Wall clock time and date at job start Tue Mar 31 2020 10:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47349 * 2 1 4 4 C 1.53006 * 109.47214 * 239.99830 * 2 1 3 5 5 C 1.50698 * 109.46590 * 60.00163 * 4 2 1 6 6 H 1.07996 * 120.00357 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99736 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00357 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00319 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46911 * 59.99533 * 9 7 5 11 11 H 1.48492 * 109.47405 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47226 * 300.00178 * 9 7 5 13 13 C 1.53006 * 109.47252 * 119.99956 * 2 1 3 14 14 N 1.46900 * 109.46955 * 299.99926 * 13 2 1 15 15 C 1.46898 * 110.99499 * 179.97438 * 14 13 2 16 16 C 1.50707 * 109.47008 * 179.97438 * 15 14 13 17 17 N 1.30647 * 125.85063 * 275.32434 * 16 15 14 18 18 C 1.33997 * 109.77994 * 180.16954 * 17 16 15 19 19 C 1.48365 * 125.64684 * 179.80964 * 18 17 16 20 20 C 1.39331 * 119.72758 * 179.71817 * 19 18 17 21 21 C 1.38397 * 119.06970 * 180.25747 * 20 19 18 22 22 C 1.38795 * 118.50751 * 359.50184 * 21 20 19 23 23 C 1.38242 * 119.36853 * 0.48047 * 22 21 20 24 24 N 1.31770 * 120.89128 * 359.76567 * 23 22 21 25 25 N 1.31509 * 108.70253 * 359.55117 * 18 17 16 26 26 N 1.34558 * 125.84972 * 94.99657 * 16 15 14 27 27 H 0.97005 * 126.74570 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.46796 * 300.00207 * 1 2 3 29 29 H 1.08998 * 109.47113 * 59.99595 * 1 2 3 30 30 H 1.08990 * 109.47625 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46853 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47022 * 299.99851 * 3 2 1 33 33 H 1.08998 * 109.47255 * 60.00105 * 3 2 1 34 34 H 1.08998 * 109.47062 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46620 * 300.00743 * 4 2 1 36 36 H 0.96996 * 120.00532 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47081 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.46557 * 59.99534 * 13 2 1 39 39 H 1.00898 * 110.99755 * 56.04599 * 14 13 2 40 40 H 1.08999 * 109.47362 * 60.00640 * 15 14 13 41 41 H 1.08996 * 109.47538 * 300.00051 * 15 14 13 42 42 H 1.08002 * 120.46227 * 359.97438 * 20 19 18 43 43 H 1.07994 * 120.74562 * 179.72473 * 21 20 19 44 44 H 1.08000 * 120.31188 * 180.24171 * 22 21 20 45 45 H 1.08002 * 119.55889 * 179.74536 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8703 -0.4822 -3.7319 8 7 2.6264 -1.5515 -3.8527 9 14 1.2471 0.3980 -5.2572 10 1 1.7420 1.7981 -5.2577 11 1 1.7421 -0.3020 -6.4696 12 1 -0.2380 0.3980 -5.2567 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 6 1.5004 0.0421 4.8772 17 7 2.0520 1.0889 5.4311 18 6 1.3235 1.4811 6.4851 19 6 1.6323 2.6314 7.3697 20 6 0.7828 2.9337 8.4319 21 6 1.0810 4.0130 9.2453 22 6 2.2262 4.7493 8.9756 23 6 3.0248 4.3929 7.9050 24 7 2.7151 3.3634 7.1430 25 7 0.2865 0.6809 6.6021 26 7 0.3845 -0.2611 5.5652 27 1 -0.2316 -0.9874 5.3809 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7209 -1.2495 35 1 1.6765 -1.7489 -1.2492 36 1 2.8607 -1.8829 -4.7337 37 1 3.1300 -0.7216 1.2490 38 1 1.6765 -1.7489 1.2492 39 1 0.5438 0.0413 2.4401 40 1 3.1108 -0.6954 3.6873 41 1 1.6571 -1.7226 3.6869 42 1 -0.0985 2.3369 8.6151 43 1 0.4389 4.2742 10.0734 44 1 2.4888 5.5948 9.5940 45 1 3.9145 4.9662 7.6898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449713272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:43 Heat of formation + Delta-G solvation = 113.068210 kcal Electronic energy + Delta-G solvation = -24866.016649 eV Core-core repulsion = 21305.896916 eV Total energy + Delta-G solvation = -3560.119734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32560 -40.23149 -37.78996 -34.89328 -33.42327 -32.76297 -32.34893 -31.84416 -30.44805 -27.40092 -26.57695 -26.32376 -24.85179 -24.53435 -23.69680 -22.24720 -21.45923 -20.87848 -18.41566 -17.80284 -17.21714 -16.34474 -16.18570 -16.03018 -15.99153 -15.60505 -14.78377 -14.56730 -14.27990 -14.04828 -13.93719 -13.47819 -13.32397 -13.15801 -12.68583 -12.60453 -12.21164 -12.01420 -11.86840 -11.75671 -10.98546 -10.89499 -10.80818 -10.77981 -10.49822 -10.31601 -10.20263 -10.19709 -10.15812 -9.98578 -9.73798 -9.70499 -9.10004 -9.02456 -8.86604 -8.31560 -8.29352 -5.96286 -3.96378 0.37957 0.94713 1.46423 2.26089 2.68380 3.35171 3.39829 3.40107 3.42373 3.67531 3.94148 4.29906 4.46413 4.49870 4.51230 4.62425 4.71394 4.83465 5.01922 5.20342 5.39369 5.39517 5.41706 5.62272 5.64960 5.68587 5.77794 5.93673 5.97485 6.00972 6.15176 6.27155 6.31995 6.45734 6.66199 6.71783 6.77741 6.83295 7.06688 7.18629 7.25608 7.30780 7.46095 7.61381 7.68890 7.83852 7.92156 8.03603 8.47801 9.08544 9.66386 11.15240 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.002153 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.864315 B =13003.480004 C =13536.283839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.117 4.117 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.071 3.929 14 N -0.675 5.675 15 C 0.134 3.866 16 C 0.296 3.704 17 N -0.484 5.484 18 C 0.268 3.732 19 C 0.207 3.793 20 C -0.137 4.137 21 C -0.078 4.078 22 C -0.164 4.164 23 C 0.103 3.897 24 N -0.443 5.443 25 N -0.297 5.297 26 N -0.477 5.477 27 H 0.442 0.558 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.339 0.661 40 H 0.112 0.888 41 H 0.053 0.947 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 6.052 26.789 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.175 4.175 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.057 4.057 14 N -0.308 5.308 15 C 0.003 3.997 16 C 0.017 3.983 17 N -0.211 5.211 18 C -0.013 4.013 19 C 0.068 3.932 20 C -0.159 4.159 21 C -0.104 4.104 22 C -0.185 4.185 23 C -0.056 4.056 24 N -0.153 5.153 25 N -0.129 5.129 26 N -0.196 5.196 27 H 0.288 0.712 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.158 0.842 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.847 6.421 26.374 27.293 hybrid contribution -1.816 -0.779 -0.497 2.038 sum -4.663 5.642 25.876 26.892 Atomic orbital electron populations 1.21784 0.96149 1.00317 1.00484 1.20641 0.94658 0.96326 0.94179 1.21610 1.00009 0.95586 1.00259 1.19121 0.96236 0.94909 0.90039 1.21187 1.30907 1.11893 0.90594 0.92353 1.25014 0.95410 0.95127 0.99055 1.69948 1.37190 1.23165 1.23415 0.86720 0.79099 0.79873 0.82669 1.20285 1.21461 1.20402 1.22194 1.00393 0.94612 0.88507 1.60502 1.16426 1.53701 1.00218 1.20474 1.02487 0.92768 0.84014 1.24506 0.85354 0.93031 0.95425 1.70649 1.30521 1.11266 1.08670 1.21747 0.90297 0.95314 0.93959 1.18037 0.91834 0.91629 0.91732 1.22052 1.00589 0.98326 0.94960 1.21543 0.96515 0.93744 0.98596 1.22322 0.95872 1.01111 0.99213 1.22849 0.99121 0.92885 0.90726 1.67596 1.15610 1.04589 1.27480 1.78106 1.21939 1.03734 1.09120 1.48081 1.22062 1.26531 1.22962 0.71221 0.95005 0.91558 0.94049 0.93931 0.92674 0.93835 0.96510 0.96883 0.93103 0.90777 0.95359 0.84170 0.86988 0.92893 0.83943 0.84218 0.84330 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 7.89 37.15 0.29 -2.04 16 2 C -0.06 -1.11 0.60 -154.51 -0.09 -1.20 16 3 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.72 7.65 -34.44 -0.26 -13.98 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.13 4.65 -3.82 -0.02 1.11 16 14 N -0.68 -9.23 5.70 -115.05 -0.66 -9.88 16 15 C 0.13 1.50 6.31 -4.97 -0.03 1.47 16 16 C 0.30 3.69 7.73 -155.73 -1.20 2.48 16 17 N -0.48 -7.46 11.17 -8.56 -0.10 -7.56 16 18 C 0.27 3.83 7.86 -156.62 -1.23 2.60 16 19 C 0.21 2.65 6.75 -82.94 -0.56 2.09 16 20 C -0.14 -1.30 9.72 -39.12 -0.38 -1.68 16 21 C -0.08 -0.54 10.17 -39.32 -0.40 -0.94 16 22 C -0.16 -1.09 10.11 -39.37 -0.40 -1.49 16 23 C 0.10 0.93 11.17 -17.58 -0.20 0.73 16 24 N -0.44 -5.80 10.28 -9.77 -0.10 -5.90 16 25 N -0.30 -3.78 12.41 32.10 0.40 -3.39 16 26 N -0.48 -5.02 7.44 32.61 0.24 -4.77 16 27 H 0.44 3.01 8.96 -182.34 -1.63 1.37 16 28 H 0.03 0.49 6.57 -51.92 -0.34 0.15 16 29 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 33 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.34 4.42 6.76 -39.29 -0.27 4.15 16 40 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.14 1.18 7.82 -52.49 -0.41 0.77 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -33.90 373.58 -11.08 -44.97 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.82 Total: 0.87 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.39 Total: -10.66 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.53 Total: -57.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.90 -11.08 -44.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449713272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.041 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds