Wall clock time and date at job start Tue Mar 31 2020 10:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47349 * 2 1 4 4 C 1.53006 * 109.47214 * 239.99830 * 2 1 3 5 5 C 1.50698 * 109.46590 * 60.00163 * 4 2 1 6 6 H 1.07996 * 120.00357 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99736 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00357 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00319 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46911 * 59.99533 * 9 7 5 11 11 H 1.48492 * 109.47405 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47226 * 300.00178 * 9 7 5 13 13 C 1.53006 * 109.47252 * 119.99956 * 2 1 3 14 14 N 1.46900 * 109.46955 * 299.99926 * 13 2 1 15 15 C 1.46898 * 110.99499 * 179.97438 * 14 13 2 16 16 C 1.50707 * 109.47008 * 179.97438 * 15 14 13 17 17 N 1.30647 * 125.85063 * 275.32434 * 16 15 14 18 18 C 1.33997 * 109.77994 * 180.16954 * 17 16 15 19 19 C 1.48365 * 125.64684 * 179.80964 * 18 17 16 20 20 C 1.39331 * 119.72758 * 179.71817 * 19 18 17 21 21 C 1.38397 * 119.06970 * 180.25747 * 20 19 18 22 22 C 1.38795 * 118.50751 * 359.50184 * 21 20 19 23 23 C 1.38242 * 119.36853 * 0.48047 * 22 21 20 24 24 N 1.31770 * 120.89128 * 359.76567 * 23 22 21 25 25 N 1.31509 * 108.70253 * 359.55117 * 18 17 16 26 26 N 1.34558 * 125.84972 * 94.99657 * 16 15 14 27 27 H 0.97005 * 126.74570 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.46796 * 300.00207 * 1 2 3 29 29 H 1.08998 * 109.47113 * 59.99595 * 1 2 3 30 30 H 1.08990 * 109.47625 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46853 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47022 * 299.99851 * 3 2 1 33 33 H 1.08998 * 109.47255 * 60.00105 * 3 2 1 34 34 H 1.08998 * 109.47062 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46620 * 300.00743 * 4 2 1 36 36 H 0.96996 * 120.00532 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47081 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.46557 * 59.99534 * 13 2 1 39 39 H 1.00898 * 110.99755 * 56.04599 * 14 13 2 40 40 H 1.08999 * 109.47362 * 60.00640 * 15 14 13 41 41 H 1.08996 * 109.47538 * 300.00051 * 15 14 13 42 42 H 1.08002 * 120.46227 * 359.97438 * 20 19 18 43 43 H 1.07994 * 120.74562 * 179.72473 * 21 20 19 44 44 H 1.08000 * 120.31188 * 180.24171 * 22 21 20 45 45 H 1.08002 * 119.55889 * 179.74536 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8703 -0.4822 -3.7319 8 7 2.6264 -1.5515 -3.8527 9 14 1.2471 0.3980 -5.2572 10 1 1.7420 1.7981 -5.2577 11 1 1.7421 -0.3020 -6.4696 12 1 -0.2380 0.3980 -5.2567 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 6 1.5004 0.0421 4.8772 17 7 2.0520 1.0889 5.4311 18 6 1.3235 1.4811 6.4851 19 6 1.6323 2.6314 7.3697 20 6 0.7828 2.9337 8.4319 21 6 1.0810 4.0130 9.2453 22 6 2.2262 4.7493 8.9756 23 6 3.0248 4.3929 7.9050 24 7 2.7151 3.3634 7.1430 25 7 0.2865 0.6809 6.6021 26 7 0.3845 -0.2611 5.5652 27 1 -0.2316 -0.9874 5.3809 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7209 -1.2495 35 1 1.6765 -1.7489 -1.2492 36 1 2.8607 -1.8829 -4.7337 37 1 3.1300 -0.7216 1.2490 38 1 1.6765 -1.7489 1.2492 39 1 0.5438 0.0413 2.4401 40 1 3.1108 -0.6954 3.6873 41 1 1.6571 -1.7226 3.6869 42 1 -0.0985 2.3369 8.6151 43 1 0.4389 4.2742 10.0734 44 1 2.4888 5.5948 9.5940 45 1 3.9145 4.9662 7.6898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449713272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:42 Heat of formation + Delta-G solvation = 90.354313 kcal Electronic energy + Delta-G solvation = -24867.001598 eV Core-core repulsion = 21305.896916 eV Total energy + Delta-G solvation = -3561.104682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.24936 -40.90016 -39.22706 -36.20689 -34.49527 -34.07318 -33.40437 -32.87261 -31.32080 -29.13234 -27.91684 -27.87930 -26.02875 -25.60062 -24.41840 -23.90718 -22.30908 -21.76927 -19.68800 -18.99708 -18.30539 -17.86592 -17.17588 -16.95469 -16.65984 -16.62816 -16.53302 -15.66600 -15.56746 -14.96055 -14.84425 -14.75164 -14.48807 -14.12698 -13.95949 -13.94422 -13.83214 -13.34901 -12.91608 -12.76169 -12.73696 -12.71453 -12.41167 -12.22769 -12.14479 -11.92208 -11.60819 -11.36892 -11.18313 -11.03616 -10.85799 -10.83325 -10.72907 -10.47649 -10.43389 -9.79203 -9.38226 -8.12188 -6.18305 -0.35175 0.33155 0.59325 1.41625 1.43505 1.45332 1.50690 1.78510 2.44850 2.58465 2.95306 3.14023 3.21706 3.30399 3.67406 3.84247 4.03692 4.11389 4.14751 4.18229 4.24472 4.36404 4.39967 4.50699 4.59280 4.77555 4.80032 4.81973 4.97780 4.98119 5.03645 5.08174 5.20263 5.21847 5.22877 5.26186 5.53733 5.56763 5.59975 5.64603 5.72625 5.87661 5.90481 5.95818 6.06130 6.36684 6.39518 6.86007 6.96445 7.07715 7.48439 8.99542 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.002153 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.864315 B =13003.480004 C =13536.283839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 C -0.108 4.108 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.063 0.937 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.085 3.915 14 N -0.682 5.682 15 C 0.139 3.861 16 C 0.296 3.704 17 N -0.526 5.526 18 C 0.253 3.747 19 C 0.167 3.833 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.148 4.148 23 C 0.086 3.914 24 N -0.489 5.489 25 N -0.303 5.303 26 N -0.461 5.461 27 H 0.458 0.542 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.059 0.941 34 H -0.013 1.013 35 H -0.009 1.009 36 H 0.259 0.741 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.345 0.655 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.149 0.851 43 H 0.178 0.822 44 H 0.178 0.822 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 7.299 28.860 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.165 4.165 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.044 4.044 14 N -0.316 5.316 15 C 0.008 3.992 16 C 0.017 3.983 17 N -0.254 5.254 18 C -0.028 4.028 19 C 0.029 3.971 20 C -0.162 4.162 21 C -0.098 4.098 22 C -0.168 4.168 23 C -0.072 4.072 24 N -0.199 5.199 25 N -0.135 5.135 26 N -0.182 5.182 27 H 0.308 0.692 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.005 0.995 35 H 0.010 0.990 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.165 0.835 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.166 0.834 43 H 0.195 0.805 44 H 0.196 0.804 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.344 7.654 28.457 29.787 hybrid contribution -1.334 -1.114 -1.031 2.021 sum -5.678 6.541 27.426 28.761 Atomic orbital electron populations 1.21689 0.94705 1.00750 1.00888 1.20490 0.95767 0.95747 0.93479 1.21509 0.99246 0.95737 1.00056 1.18995 0.94237 0.94188 0.92265 1.21586 1.30255 1.11821 0.91589 0.91926 1.25878 0.95810 0.95946 1.02419 1.70083 1.38731 1.24804 1.24026 0.85680 0.78929 0.78730 0.78784 1.19665 1.21354 1.19323 1.21863 0.99819 0.94724 0.87973 1.60331 1.16864 1.54163 1.00223 1.20502 1.02327 0.94060 0.82297 1.24544 0.85617 0.92592 0.95547 1.70597 1.32135 1.12821 1.09894 1.22202 0.90400 0.96083 0.94103 1.18243 0.93238 0.92310 0.93270 1.22209 1.00233 0.99258 0.94461 1.22021 0.96847 0.92315 0.98658 1.22746 0.94662 1.01328 0.98043 1.23339 1.00329 0.92293 0.91262 1.67490 1.16592 1.06279 1.29534 1.78032 1.21714 1.03974 1.09775 1.47981 1.21786 1.26431 1.22047 0.69234 0.91977 0.93710 0.93604 0.95005 0.94477 0.92210 0.99513 0.99044 0.93193 0.91614 0.94341 0.83498 0.87414 0.89324 0.83355 0.80495 0.80415 0.80110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 7.89 71.98 0.57 -3.69 16 2 C -0.05 -2.09 0.60 -52.18 -0.03 -2.12 16 3 C -0.11 -4.22 8.06 71.98 0.58 -3.64 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -28.22 7.65 25.60 0.20 -28.02 16 6 H 0.06 3.32 5.68 -2.91 -0.02 3.31 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -56.60 13.29 21.45 0.28 -56.32 16 9 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.08 2.62 4.65 86.31 0.40 3.02 16 14 N -0.68 -17.52 5.70 -517.92 -2.95 -20.47 16 15 C 0.14 2.89 6.31 85.56 0.54 3.43 16 16 C 0.30 7.12 7.73 138.24 1.07 8.19 16 17 N -0.53 -16.40 11.17 -180.99 -2.02 -18.42 16 18 C 0.25 7.34 7.86 137.45 1.08 8.42 16 19 C 0.17 4.34 6.75 41.98 0.28 4.62 16 20 C -0.14 -2.51 9.72 22.57 0.22 -2.29 16 21 C -0.07 -0.80 10.17 22.44 0.23 -0.57 16 22 C -0.15 -1.53 10.11 22.40 0.23 -1.30 16 23 C 0.09 1.47 11.17 84.70 0.95 2.41 16 24 N -0.49 -12.99 10.28 -184.83 -1.90 -14.89 16 25 N -0.30 -7.58 12.41 -52.37 -0.65 -8.23 16 26 N -0.46 -9.11 7.44 -50.73 -0.38 -9.49 16 27 H 0.46 5.32 8.96 -213.10 -1.91 3.41 16 28 H 0.06 1.76 6.57 -2.38 -0.02 1.75 16 29 H 0.04 1.73 6.62 -2.39 -0.02 1.71 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 33 H 0.06 2.12 7.60 -2.39 -0.02 2.10 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.35 8.15 6.76 -89.70 -0.61 7.54 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.15 2.33 7.82 -2.91 -0.02 2.31 16 43 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 44 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 45 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -76.64 373.58 -0.20 -76.83 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -1.50 Total: 13.56 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 6.89 Total: -9.10 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -7.62 Total: -127.81 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -76.64 -0.20 -76.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449713272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.189 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds