Wall clock time and date at job start Tue Mar 31 2020 12:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 119.99729 * 2 1 4 4 H 1.48507 * 109.47049 * 269.99655 * 3 2 1 5 5 H 1.48497 * 109.47454 * 29.99812 * 3 2 1 6 6 H 1.48502 * 109.46987 * 149.99754 * 3 2 1 7 7 C 1.39947 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99051 * 161.99881 * 7 2 1 9 9 C 1.41389 * 120.00411 * 342.00447 * 7 2 1 10 10 C 1.40709 * 120.24497 * 155.24651 * 9 7 2 11 11 C 1.37620 * 119.74557 * 180.29569 * 10 9 7 12 12 C 1.38633 * 120.24716 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.74876 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.46789 * 270.02061 * 13 12 11 15 15 C 1.46813 * 110.99947 * 66.04604 * 14 13 12 16 16 C 1.53106 * 109.70037 * 185.58078 * 15 14 13 17 17 C 1.53012 * 109.08804 * 301.04284 * 16 15 14 18 18 H 1.08998 * 109.48620 * 298.20230 * 17 16 15 19 19 C 1.52910 * 109.97686 * 177.79662 * 17 16 15 20 20 C 1.53067 * 109.25977 * 179.83074 * 19 17 16 21 21 H 1.08996 * 109.44530 * 299.76159 * 20 19 17 22 22 O 1.42901 * 109.41079 * 179.84953 * 20 19 17 23 23 C 1.52964 * 109.64619 * 59.81958 * 20 19 17 24 24 C 1.53060 * 109.65002 * 300.43599 * 23 20 19 25 25 C 1.52910 * 109.26944 * 59.80724 * 24 23 20 26 26 H 1.09004 * 109.46029 * 59.40136 * 25 24 23 27 27 C 1.46913 * 111.00072 * 190.51020 * 14 13 12 28 28 C 1.38632 * 120.50363 * 0.02562 * 12 11 10 29 29 C 1.37620 * 120.24677 * 0.02562 * 28 12 11 30 30 H 0.96998 * 120.00154 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.12900 * 0.25396 * 10 9 7 32 32 H 1.08006 * 119.87660 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.47280 * 30.01653 * 13 12 11 34 34 H 1.09003 * 109.47348 * 150.02249 * 13 12 11 35 35 H 1.08994 * 109.43172 * 305.65396 * 15 14 13 36 36 H 1.09004 * 109.42937 * 65.51009 * 15 14 13 37 37 H 1.08996 * 109.53698 * 60.92478 * 16 15 14 38 38 H 1.08996 * 109.53180 * 181.16372 * 16 15 14 39 39 H 1.08994 * 109.50472 * 299.77107 * 19 17 16 40 40 H 1.08997 * 109.50470 * 59.89676 * 19 17 16 41 41 H 0.96702 * 114.00221 * 179.83557 * 22 20 19 42 42 H 1.09005 * 109.43682 * 180.37812 * 23 20 19 43 43 H 1.08998 * 109.40708 * 60.47585 * 23 20 19 44 44 H 1.08998 * 109.50905 * 299.86577 * 24 23 20 45 45 H 1.09001 * 109.53571 * 179.76564 * 24 23 20 46 46 H 1.09003 * 109.49423 * 294.21469 * 27 14 13 47 47 H 1.09003 * 109.49695 * 54.29275 * 27 14 13 48 48 H 1.08001 * 119.87553 * 180.02562 * 28 12 11 49 49 H 1.07998 * 120.12506 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0484 -1.2349 -0.2885 9 6 1.3530 -2.4064 0.3793 10 6 1.8210 -3.6494 -0.0851 11 6 1.1720 -4.8051 0.2851 12 6 0.0613 -4.7477 1.1128 13 6 -0.6413 -6.0202 1.5107 14 7 -1.6908 -6.3274 0.5298 15 6 -1.1097 -6.6443 -0.7806 16 6 -2.2276 -6.8227 -1.8114 17 6 -3.1558 -7.9494 -1.3530 18 1 -2.5946 -8.8820 -1.2953 19 6 -4.3118 -8.1085 -2.3412 20 6 -5.2268 -9.2414 -1.8697 21 1 -4.6593 -10.1709 -1.8237 22 8 -6.3104 -9.3906 -2.7892 23 6 -5.7787 -8.9127 -0.4815 24 6 -4.6213 -8.7414 0.5053 25 6 -3.7165 -7.6042 0.0294 26 1 -4.2945 -6.6821 -0.0328 27 6 -2.5574 -7.4128 1.0084 28 6 -0.4087 -3.5286 1.5764 29 6 0.2241 -2.3602 1.2181 30 1 -0.4850 0.8400 -0.0004 31 1 2.6860 -3.6963 -0.7302 32 1 1.5292 -5.7603 -0.0705 33 1 0.0783 -6.8384 1.5410 34 1 -1.0903 -5.8946 2.4960 35 1 -0.4546 -5.8311 -1.0930 36 1 -0.5327 -7.5663 -0.7080 37 1 -2.7947 -5.8959 -1.8982 38 1 -1.7943 -7.0781 -2.7784 39 1 -4.8790 -7.1791 -2.3905 40 1 -3.9164 -8.3471 -3.3285 41 1 -6.9312 -10.0941 -2.5548 42 1 -6.4243 -9.7245 -0.1462 43 1 -6.3540 -7.9881 -0.5300 44 1 -4.0468 -9.6663 0.5567 45 1 -5.0164 -8.5031 1.4928 46 1 -1.9813 -8.3358 1.0750 47 1 -2.9507 -7.1574 1.9924 48 1 -1.2745 -3.4958 2.2210 49 1 -0.1440 -1.4116 1.5801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451700741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:19 Heat of formation + Delta-G solvation = -57.667761 kcal Electronic energy + Delta-G solvation = -26442.770290 eV Core-core repulsion = 22946.494481 eV Total energy + Delta-G solvation = -3496.275809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.11450 -38.09591 -37.10887 -35.24494 -33.64178 -32.77194 -31.06603 -29.62938 -29.15002 -28.95489 -26.54629 -24.09452 -23.53369 -22.19641 -21.87565 -20.92612 -20.21338 -19.78302 -19.49863 -17.36339 -17.25823 -15.58192 -15.39059 -15.29459 -15.13590 -14.60206 -14.26414 -14.16999 -14.01992 -13.75833 -13.43387 -13.36123 -12.91977 -12.70471 -12.49476 -12.29539 -11.90821 -11.75807 -11.67632 -11.50461 -11.49626 -11.32795 -11.10837 -10.98867 -10.87392 -10.75909 -10.54835 -10.46716 -10.36590 -10.22246 -10.00944 -9.79148 -9.51238 -9.33990 -9.08146 -7.86612 -7.39820 -7.24218 -6.72920 -4.31363 2.77221 3.08127 3.10716 3.11920 3.20253 3.91716 3.95116 4.26652 4.47534 4.54559 4.71171 4.82237 4.90128 5.01318 5.08114 5.20878 5.30541 5.35099 5.50214 5.55378 5.61973 5.67332 5.71005 5.75297 5.78801 5.83875 5.87371 5.95080 5.96437 6.02465 6.07886 6.13994 6.25271 6.27289 6.32642 6.40160 6.44939 6.50095 6.57961 6.99187 7.10231 7.33113 7.38548 7.40794 7.54317 7.55867 7.65584 7.92317 8.08944 8.18820 8.33924 8.68303 8.93072 9.01768 10.21426 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023286 B = 0.002632 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.152781 B =10635.520903 C =11007.244475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.227 4.227 11 C -0.085 4.085 12 C -0.206 4.206 13 C 0.122 3.878 14 N -0.531 5.531 15 C 0.057 3.943 16 C -0.110 4.110 17 C -0.078 4.078 18 H 0.064 0.936 19 C -0.106 4.106 20 C 0.105 3.895 21 H 0.051 0.949 22 O -0.570 6.570 23 C -0.149 4.149 24 C -0.110 4.110 25 C -0.081 4.081 26 H 0.081 0.919 27 C 0.062 3.938 28 C -0.079 4.079 29 C -0.167 4.167 30 H 0.280 0.720 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.374 0.626 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.024 0.976 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -15.919 -0.267 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.247 4.247 11 C -0.104 4.104 12 C -0.207 4.207 13 C -0.005 4.005 14 N -0.255 5.255 15 C -0.071 4.071 16 C -0.148 4.148 17 C -0.097 4.097 18 H 0.083 0.917 19 C -0.143 4.143 20 C 0.046 3.954 21 H 0.069 0.931 22 O -0.375 6.375 23 C -0.187 4.187 24 C -0.148 4.148 25 C -0.100 4.100 26 H 0.099 0.901 27 C -0.066 4.066 28 C -0.098 4.098 29 C -0.186 4.186 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.221 0.779 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.689 -14.846 -0.623 17.739 hybrid contribution 0.508 -0.419 0.324 0.734 sum -9.181 -15.265 -0.298 17.816 Atomic orbital electron populations 1.69840 1.07544 1.29141 1.35091 1.25900 0.94693 1.01229 0.92324 0.86368 0.80687 0.80805 0.79186 1.19542 1.20112 1.18514 1.19570 0.98142 0.91399 1.40262 0.90600 1.17602 0.91109 0.91929 0.88385 1.20926 1.03839 0.92963 1.06976 1.20339 0.95901 0.96135 0.97999 1.18840 1.00199 0.92996 1.08705 1.20714 0.90902 0.94933 0.93914 1.61929 1.21504 1.39182 1.02922 1.22093 0.95967 0.99695 0.89311 1.21609 0.96773 0.98590 0.97792 1.21134 0.95379 0.98885 0.94300 0.91714 1.21513 0.95625 0.98142 0.99031 1.21855 0.87501 0.98113 0.87900 0.93070 1.86538 1.39721 1.59430 1.51822 1.22241 0.98466 1.02420 0.95543 1.21480 0.96130 0.98725 0.98503 1.21214 0.95902 0.98633 0.94268 0.90061 1.22055 0.94083 0.92580 0.97907 1.20475 0.97638 0.92487 0.99198 1.21290 0.99442 0.96726 1.01190 0.90920 0.89251 0.90009 0.96102 0.91796 0.89123 0.96107 0.90824 0.91797 0.90999 0.91406 0.77911 0.92054 0.91001 0.92100 0.91503 0.95749 0.91182 0.89583 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.65 10.97 55.55 0.61 -20.04 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 8 H 0.08 1.95 7.91 -52.48 -0.42 1.54 16 9 C 0.11 3.00 5.57 -106.83 -0.60 2.41 16 10 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 11 C -0.08 -1.87 7.84 -39.66 -0.31 -2.18 16 12 C -0.21 -4.41 4.92 -104.33 -0.51 -4.93 16 13 C 0.12 2.14 5.11 -4.97 -0.03 2.12 16 14 N -0.53 -8.66 4.64 -236.11 -1.09 -9.76 16 15 C 0.06 0.90 5.15 -3.82 -0.02 0.88 16 16 C -0.11 -1.49 5.42 -26.67 -0.14 -1.63 16 17 C -0.08 -0.90 2.01 -90.59 -0.18 -1.08 16 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.11 -1.15 4.89 -26.74 -0.13 -1.28 16 20 C 0.10 0.98 3.47 -26.72 -0.09 0.89 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 O -0.57 -5.55 13.32 -35.23 -0.47 -6.02 16 23 C -0.15 -1.27 5.54 -26.72 -0.15 -1.41 16 24 C -0.11 -1.00 5.25 -26.75 -0.14 -1.14 16 25 C -0.08 -0.94 2.10 -90.64 -0.19 -1.13 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 C 0.06 0.81 4.79 -3.85 -0.02 0.79 16 28 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 29 C -0.17 -4.36 8.69 -38.87 -0.34 -4.70 16 30 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 31 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.08 1.61 7.94 -52.48 -0.42 1.19 16 33 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 34 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16 35 H 0.09 1.68 5.75 -51.93 -0.30 1.38 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.37 1.99 9.08 45.56 0.41 2.40 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 48 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 49 H 0.12 3.13 6.18 -52.49 -0.32 2.80 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -28.21 375.34 -12.14 -40.34 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.76 Total: 7.56 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -4.04 Total: -31.48 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: -0.49 Total: -29.80 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.47 Total: -6.02 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.21 -12.14 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451700741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.326 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds