Wall clock time and date at job start Tue Mar 31 2020 12:09:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30831 * 1
3 3 Si 1.86795 * 119.99729 * 2 1
4 4 H 1.48507 * 109.47049 * 269.99655 * 3 2 1
5 5 H 1.48497 * 109.47454 * 29.99812 * 3 2 1
6 6 H 1.48502 * 109.46987 * 149.99754 * 3 2 1
7 7 C 1.39947 * 119.99768 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99051 * 161.99881 * 7 2 1
9 9 C 1.41389 * 120.00411 * 342.00447 * 7 2 1
10 10 C 1.40709 * 120.24497 * 155.24651 * 9 7 2
11 11 C 1.37620 * 119.74557 * 180.29569 * 10 9 7
12 12 C 1.38633 * 120.24716 * 359.97438 * 11 10 9
13 13 C 1.50706 * 119.74876 * 179.97438 * 12 11 10
14 14 N 1.46902 * 109.46789 * 270.02061 * 13 12 11
15 15 C 1.46813 * 110.99947 * 66.04604 * 14 13 12
16 16 C 1.53106 * 109.70037 * 185.58078 * 15 14 13
17 17 C 1.53012 * 109.08804 * 301.04284 * 16 15 14
18 18 H 1.08998 * 109.48620 * 298.20230 * 17 16 15
19 19 C 1.52910 * 109.97686 * 177.79662 * 17 16 15
20 20 C 1.53067 * 109.25977 * 179.83074 * 19 17 16
21 21 H 1.08996 * 109.44530 * 299.76159 * 20 19 17
22 22 O 1.42901 * 109.41079 * 179.84953 * 20 19 17
23 23 C 1.52964 * 109.64619 * 59.81958 * 20 19 17
24 24 C 1.53060 * 109.65002 * 300.43599 * 23 20 19
25 25 C 1.52910 * 109.26944 * 59.80724 * 24 23 20
26 26 H 1.09004 * 109.46029 * 59.40136 * 25 24 23
27 27 C 1.46913 * 111.00072 * 190.51020 * 14 13 12
28 28 C 1.38632 * 120.50363 * 0.02562 * 12 11 10
29 29 C 1.37620 * 120.24677 * 0.02562 * 28 12 11
30 30 H 0.96998 * 120.00154 * 0.02562 * 1 2 3
31 31 H 1.08005 * 120.12900 * 0.25396 * 10 9 7
32 32 H 1.08006 * 119.87660 * 179.97438 * 11 10 9
33 33 H 1.08999 * 109.47280 * 30.01653 * 13 12 11
34 34 H 1.09003 * 109.47348 * 150.02249 * 13 12 11
35 35 H 1.08994 * 109.43172 * 305.65396 * 15 14 13
36 36 H 1.09004 * 109.42937 * 65.51009 * 15 14 13
37 37 H 1.08996 * 109.53698 * 60.92478 * 16 15 14
38 38 H 1.08996 * 109.53180 * 181.16372 * 16 15 14
39 39 H 1.08994 * 109.50472 * 299.77107 * 19 17 16
40 40 H 1.08997 * 109.50470 * 59.89676 * 19 17 16
41 41 H 0.96702 * 114.00221 * 179.83557 * 22 20 19
42 42 H 1.09005 * 109.43682 * 180.37812 * 23 20 19
43 43 H 1.08998 * 109.40708 * 60.47585 * 23 20 19
44 44 H 1.08998 * 109.50905 * 299.86577 * 24 23 20
45 45 H 1.09001 * 109.53571 * 179.76564 * 24 23 20
46 46 H 1.09003 * 109.49423 * 294.21469 * 27 14 13
47 47 H 1.09003 * 109.49695 * 54.29275 * 27 14 13
48 48 H 1.08001 * 119.87553 * 180.02562 * 28 12 11
49 49 H 1.07998 * 120.12506 * 179.97438 * 29 28 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 2.4898 2.0464 -1.4001
5 1 1.4397 2.6527 0.7000
6 1 3.5398 1.4402 0.7001
7 6 2.0080 -1.2120 0.0005
8 1 3.0484 -1.2349 -0.2885
9 6 1.3530 -2.4064 0.3793
10 6 1.8210 -3.6494 -0.0851
11 6 1.1720 -4.8051 0.2851
12 6 0.0613 -4.7477 1.1128
13 6 -0.6413 -6.0202 1.5107
14 7 -1.6908 -6.3274 0.5298
15 6 -1.1097 -6.6443 -0.7806
16 6 -2.2276 -6.8227 -1.8114
17 6 -3.1558 -7.9494 -1.3530
18 1 -2.5946 -8.8820 -1.2953
19 6 -4.3118 -8.1085 -2.3412
20 6 -5.2268 -9.2414 -1.8697
21 1 -4.6593 -10.1709 -1.8237
22 8 -6.3104 -9.3906 -2.7892
23 6 -5.7787 -8.9127 -0.4815
24 6 -4.6213 -8.7414 0.5053
25 6 -3.7165 -7.6042 0.0294
26 1 -4.2945 -6.6821 -0.0328
27 6 -2.5574 -7.4128 1.0084
28 6 -0.4087 -3.5286 1.5764
29 6 0.2241 -2.3602 1.2181
30 1 -0.4850 0.8400 -0.0004
31 1 2.6860 -3.6963 -0.7302
32 1 1.5292 -5.7603 -0.0705
33 1 0.0783 -6.8384 1.5410
34 1 -1.0903 -5.8946 2.4960
35 1 -0.4546 -5.8311 -1.0930
36 1 -0.5327 -7.5663 -0.7080
37 1 -2.7947 -5.8959 -1.8982
38 1 -1.7943 -7.0781 -2.7784
39 1 -4.8790 -7.1791 -2.3905
40 1 -3.9164 -8.3471 -3.3285
41 1 -6.9312 -10.0941 -2.5548
42 1 -6.4243 -9.7245 -0.1462
43 1 -6.3540 -7.9881 -0.5300
44 1 -4.0468 -9.6663 0.5567
45 1 -5.0164 -8.5031 1.4928
46 1 -1.9813 -8.3358 1.0750
47 1 -2.9507 -7.1574 1.9924
48 1 -1.2745 -3.4958 2.2210
49 1 -0.1440 -1.4116 1.5801
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451700741.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:19
Heat of formation + Delta-G solvation = -57.667761 kcal
Electronic energy + Delta-G solvation = -26442.770290 eV
Core-core repulsion = 22946.494481 eV
Total energy + Delta-G solvation = -3496.275809 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.11450 -38.09591 -37.10887 -35.24494 -33.64178 -32.77194 -31.06603 -29.62938
-29.15002 -28.95489 -26.54629 -24.09452 -23.53369 -22.19641 -21.87565 -20.92612
-20.21338 -19.78302 -19.49863 -17.36339 -17.25823 -15.58192 -15.39059 -15.29459
-15.13590 -14.60206 -14.26414 -14.16999 -14.01992 -13.75833 -13.43387 -13.36123
-12.91977 -12.70471 -12.49476 -12.29539 -11.90821 -11.75807 -11.67632 -11.50461
-11.49626 -11.32795 -11.10837 -10.98867 -10.87392 -10.75909 -10.54835 -10.46716
-10.36590 -10.22246 -10.00944 -9.79148 -9.51238 -9.33990 -9.08146 -7.86612
-7.39820 -7.24218 -6.72920 -4.31363 2.77221 3.08127 3.10716 3.11920
3.20253 3.91716 3.95116 4.26652 4.47534 4.54559 4.71171 4.82237
4.90128 5.01318 5.08114 5.20878 5.30541 5.35099 5.50214 5.55378
5.61973 5.67332 5.71005 5.75297 5.78801 5.83875 5.87371 5.95080
5.96437 6.02465 6.07886 6.13994 6.25271 6.27289 6.32642 6.40160
6.44939 6.50095 6.57961 6.99187 7.10231 7.33113 7.38548 7.40794
7.54317 7.55867 7.65584 7.92317 8.08944 8.18820 8.33924 8.68303
8.93072 9.01768 10.21426
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.023286 B = 0.002632 C = 0.002543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1202.152781 B =10635.520903 C =11007.244475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.791 5.791
2 C 0.076 3.924
3 Si 0.905 3.095
4 H -0.270 1.270
5 H -0.276 1.276
6 H -0.261 1.261
7 C -0.464 4.464
8 H 0.076 0.924
9 C 0.112 3.888
10 C -0.227 4.227
11 C -0.085 4.085
12 C -0.206 4.206
13 C 0.122 3.878
14 N -0.531 5.531
15 C 0.057 3.943
16 C -0.110 4.110
17 C -0.078 4.078
18 H 0.064 0.936
19 C -0.106 4.106
20 C 0.105 3.895
21 H 0.051 0.949
22 O -0.570 6.570
23 C -0.149 4.149
24 C -0.110 4.110
25 C -0.081 4.081
26 H 0.081 0.919
27 C 0.062 3.938
28 C -0.079 4.079
29 C -0.167 4.167
30 H 0.280 0.720
31 H 0.089 0.911
32 H 0.082 0.918
33 H 0.021 0.979
34 H 0.064 0.936
35 H 0.091 0.909
36 H 0.021 0.979
37 H 0.073 0.927
38 H 0.063 0.937
39 H 0.071 0.929
40 H 0.067 0.933
41 H 0.374 0.626
42 H 0.061 0.939
43 H 0.071 0.929
44 H 0.060 0.940
45 H 0.066 0.934
46 H 0.024 0.976
47 H 0.070 0.930
48 H 0.086 0.914
49 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.510 -15.919 -0.267 18.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.416 5.416
2 C -0.141 4.141
3 Si 0.730 3.270
4 H -0.195 1.195
5 H -0.201 1.201
6 H -0.185 1.185
7 C -0.494 4.494
8 H 0.094 0.906
9 C 0.110 3.890
10 C -0.247 4.247
11 C -0.104 4.104
12 C -0.207 4.207
13 C -0.005 4.005
14 N -0.255 5.255
15 C -0.071 4.071
16 C -0.148 4.148
17 C -0.097 4.097
18 H 0.083 0.917
19 C -0.143 4.143
20 C 0.046 3.954
21 H 0.069 0.931
22 O -0.375 6.375
23 C -0.187 4.187
24 C -0.148 4.148
25 C -0.100 4.100
26 H 0.099 0.901
27 C -0.066 4.066
28 C -0.098 4.098
29 C -0.186 4.186
30 H 0.091 0.909
31 H 0.107 0.893
32 H 0.100 0.900
33 H 0.039 0.961
34 H 0.082 0.918
35 H 0.109 0.891
36 H 0.039 0.961
37 H 0.092 0.908
38 H 0.082 0.918
39 H 0.090 0.910
40 H 0.086 0.914
41 H 0.221 0.779
42 H 0.079 0.921
43 H 0.090 0.910
44 H 0.079 0.921
45 H 0.085 0.915
46 H 0.043 0.957
47 H 0.088 0.912
48 H 0.104 0.896
49 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -9.689 -14.846 -0.623 17.739
hybrid contribution 0.508 -0.419 0.324 0.734
sum -9.181 -15.265 -0.298 17.816
Atomic orbital electron populations
1.69840 1.07544 1.29141 1.35091 1.25900 0.94693 1.01229 0.92324
0.86368 0.80687 0.80805 0.79186 1.19542 1.20112 1.18514 1.19570
0.98142 0.91399 1.40262 0.90600 1.17602 0.91109 0.91929 0.88385
1.20926 1.03839 0.92963 1.06976 1.20339 0.95901 0.96135 0.97999
1.18840 1.00199 0.92996 1.08705 1.20714 0.90902 0.94933 0.93914
1.61929 1.21504 1.39182 1.02922 1.22093 0.95967 0.99695 0.89311
1.21609 0.96773 0.98590 0.97792 1.21134 0.95379 0.98885 0.94300
0.91714 1.21513 0.95625 0.98142 0.99031 1.21855 0.87501 0.98113
0.87900 0.93070 1.86538 1.39721 1.59430 1.51822 1.22241 0.98466
1.02420 0.95543 1.21480 0.96130 0.98725 0.98503 1.21214 0.95902
0.98633 0.94268 0.90061 1.22055 0.94083 0.92580 0.97907 1.20475
0.97638 0.92487 0.99198 1.21290 0.99442 0.96726 1.01190 0.90920
0.89251 0.90009 0.96102 0.91796 0.89123 0.96107 0.90824 0.91797
0.90999 0.91406 0.77911 0.92054 0.91001 0.92100 0.91503 0.95749
0.91182 0.89583 0.86632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.65 10.97 55.55 0.61 -20.04 16
2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16
3 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16
4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16
6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16
7 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16
8 H 0.08 1.95 7.91 -52.48 -0.42 1.54 16
9 C 0.11 3.00 5.57 -106.83 -0.60 2.41 16
10 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16
11 C -0.08 -1.87 7.84 -39.66 -0.31 -2.18 16
12 C -0.21 -4.41 4.92 -104.33 -0.51 -4.93 16
13 C 0.12 2.14 5.11 -4.97 -0.03 2.12 16
14 N -0.53 -8.66 4.64 -236.11 -1.09 -9.76 16
15 C 0.06 0.90 5.15 -3.82 -0.02 0.88 16
16 C -0.11 -1.49 5.42 -26.67 -0.14 -1.63 16
17 C -0.08 -0.90 2.01 -90.59 -0.18 -1.08 16
18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
19 C -0.11 -1.15 4.89 -26.74 -0.13 -1.28 16
20 C 0.10 0.98 3.47 -26.72 -0.09 0.89 16
21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
22 O -0.57 -5.55 13.32 -35.23 -0.47 -6.02 16
23 C -0.15 -1.27 5.54 -26.72 -0.15 -1.41 16
24 C -0.11 -1.00 5.25 -26.75 -0.14 -1.14 16
25 C -0.08 -0.94 2.10 -90.64 -0.19 -1.13 16
26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
27 C 0.06 0.81 4.79 -3.85 -0.02 0.79 16
28 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16
29 C -0.17 -4.36 8.69 -38.87 -0.34 -4.70 16
30 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16
31 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16
32 H 0.08 1.61 7.94 -52.48 -0.42 1.19 16
33 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16
34 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16
35 H 0.09 1.68 5.75 -51.93 -0.30 1.38 16
36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
41 H 0.37 1.99 9.08 45.56 0.41 2.40 16
42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
47 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16
48 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16
49 H 0.12 3.13 6.18 -52.49 -0.32 2.80 16
LS Contribution 375.34 15.07 5.66 5.66
Total: -1.00 -28.21 375.34 -12.14 -40.34
By element:
Atomic # 1 Polarization: 15.32 SS G_CDS: -7.76 Total: 7.56 kcal
Atomic # 6 Polarization: -27.44 SS G_CDS: -4.04 Total: -31.48 kcal
Atomic # 7 Polarization: -29.31 SS G_CDS: -0.49 Total: -29.80 kcal
Atomic # 8 Polarization: -5.55 SS G_CDS: -0.47 Total: -6.02 kcal
Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -28.21 -12.14 -40.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451700741.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.326 kcal
(2) G-P(sol) polarization free energy of solvation -28.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.136 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds