Wall clock time and date at job start Tue Mar 31 2020 12:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39666 * 120.04760 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99487 * 0.02803 * 17 16 15 19 19 C 1.52941 * 109.41345 * 275.35547 * 18 17 16 20 20 C 1.53185 * 109.45230 * 176.91240 * 19 18 17 21 21 C 1.53143 * 108.88101 * 56.56625 * 20 19 18 22 22 C 1.52851 * 117.67619 * 91.49412 * 21 20 19 23 23 C 1.52808 * 117.74993 * 160.37396 * 21 20 19 24 24 C 1.53154 * 115.01084 * 306.06336 * 21 20 19 25 25 C 1.52946 * 109.41196 * 154.99647 * 18 17 16 26 26 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 27 27 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08000 * 119.95233 * 359.97438 * 13 12 11 33 33 H 1.08007 * 119.93154 * 180.25528 * 14 13 12 34 34 H 1.07998 * 119.98115 * 179.70100 * 15 14 13 35 35 H 0.96996 * 120.00573 * 180.02562 * 17 16 15 36 36 H 1.08995 * 109.41596 * 35.14631 * 18 17 16 37 37 H 1.09003 * 109.47446 * 296.91261 * 19 18 17 38 38 H 1.09000 * 109.47183 * 56.92334 * 19 18 17 39 39 H 1.08998 * 109.56848 * 296.75029 * 20 19 18 40 40 H 1.09003 * 109.66490 * 176.44512 * 20 19 18 41 41 H 1.08999 * 117.50614 * 215.21846 * 22 21 20 42 42 H 1.09001 * 117.50273 * 0.27543 * 22 21 20 43 43 H 1.09002 * 117.50418 * 359.85485 * 23 21 20 44 44 H 1.08998 * 117.50368 * 144.89761 * 23 21 20 45 45 H 1.09003 * 109.56699 * 294.11637 * 24 21 20 46 46 H 1.09009 * 109.57017 * 173.76040 * 24 21 20 47 47 H 1.09003 * 109.47310 * 303.08590 * 25 18 17 48 48 H 1.09003 * 109.47121 * 63.08881 * 25 18 17 49 49 H 1.07998 * 120.06257 * 359.97421 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 8 5.4506 -2.6364 0.0034 12 6 6.0677 -3.8472 0.0040 13 6 5.3120 -5.0117 0.0093 14 6 5.9378 -6.2436 0.0041 15 6 7.3172 -6.3208 0.0052 16 6 8.0786 -5.1588 0.0057 17 7 9.4731 -5.2364 0.0073 18 6 10.1338 -6.5440 0.0080 19 6 10.2412 -7.0586 1.4442 20 6 10.8619 -8.4590 1.4393 21 6 12.2199 -8.3968 0.7342 22 6 13.4561 -8.1398 1.5957 23 6 13.2122 -9.5281 0.9999 24 6 12.1928 -7.7875 -0.6707 25 6 11.5306 -6.4081 -0.6001 26 6 7.4514 -3.9202 0.0057 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 3.6587 -3.1509 -0.8875 31 1 3.6580 -3.1497 0.8925 32 1 4.2335 -4.9546 0.0134 33 1 5.3473 -7.1480 0.0041 34 1 7.8038 -7.2850 0.0060 35 1 10.0041 -4.4247 0.0080 36 1 9.5477 -7.2464 -0.5846 37 1 10.8700 -6.3844 2.0257 38 1 9.2473 -7.1032 1.8894 39 1 10.2055 -9.1474 0.9070 40 1 10.9983 -8.8035 2.4644 41 1 14.2559 -7.5394 1.1621 42 1 13.3057 -8.0188 2.6685 43 1 12.9015 -10.3206 1.6808 44 1 13.8516 -9.8410 0.1746 45 1 11.6213 -8.4330 -1.3376 46 1 13.2118 -7.6847 -1.0439 47 1 11.4509 -5.9914 -1.6041 48 1 12.1345 -5.7464 0.0210 49 1 8.0409 -3.0153 0.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488332924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:32 Heat of formation + Delta-G solvation = -10.520820 kcal Electronic energy + Delta-G solvation = -25225.348132 eV Core-core repulsion = 21731.116768 eV Total energy + Delta-G solvation = -3494.231364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.24506 -39.52390 -37.81827 -35.92652 -33.35327 -33.03387 -31.40970 -31.04001 -29.70782 -28.63819 -26.47911 -25.04931 -23.41651 -22.96510 -22.49473 -21.95263 -20.83554 -20.21872 -19.13953 -18.00268 -16.73908 -16.55062 -15.83080 -15.73681 -15.45051 -15.35686 -15.21285 -14.76533 -14.33416 -14.12724 -13.88547 -13.38478 -13.31507 -13.01439 -12.93218 -12.71667 -12.50803 -12.45307 -12.35739 -12.01054 -11.82025 -11.59326 -11.48632 -11.35125 -11.06972 -10.82283 -10.71139 -10.61991 -10.39812 -10.13677 -10.04041 -10.00777 -9.83574 -9.70701 -9.31368 -8.60282 -7.98392 -7.32635 -6.11412 -4.11972 1.70787 1.85964 3.13480 3.30082 3.37132 3.39271 3.43059 3.96600 4.08677 4.14517 4.26856 4.41029 4.41033 4.52514 4.63421 4.74969 4.88462 4.97679 5.06208 5.07713 5.22770 5.22833 5.27421 5.35150 5.37730 5.47008 5.48136 5.50982 5.54042 5.64150 5.66284 5.69544 5.73132 5.76565 5.79060 5.93892 5.99065 6.01886 6.04862 6.12471 6.40748 6.48601 6.62314 6.75917 6.86170 7.10818 7.26919 7.40598 7.64393 7.69601 8.02506 8.41463 8.89751 9.49066 11.01136 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.037644 B = 0.001953 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.627162 B =14334.181670 C =14716.212303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.187 3.813 13 C -0.264 4.264 14 C -0.037 4.037 15 C -0.244 4.244 16 C 0.249 3.751 17 N -0.745 5.745 18 C 0.157 3.843 19 C -0.132 4.132 20 C -0.079 4.079 21 C -0.124 4.124 22 C -0.174 4.174 23 C -0.177 4.177 24 C -0.076 4.076 25 C -0.123 4.123 26 C -0.239 4.239 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.757 -19.122 0.892 33.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.139 3.861 13 C -0.284 4.284 14 C -0.055 4.055 15 C -0.266 4.266 16 C 0.146 3.854 17 N -0.374 5.374 18 C 0.051 3.949 19 C -0.171 4.171 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.211 4.211 23 C -0.214 4.214 24 C -0.114 4.114 25 C -0.161 4.161 26 C -0.262 4.262 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 27.709 -18.977 0.887 33.596 hybrid contribution 0.352 1.038 0.061 1.097 sum 28.061 -17.939 0.949 33.318 Atomic orbital electron populations 1.69894 1.06259 1.27167 1.50310 1.24935 0.94760 0.99188 0.94156 0.86758 0.80466 0.83307 0.78745 1.20081 1.21199 1.18758 1.20854 0.88384 0.94936 1.52191 0.90720 1.19588 0.96881 0.90392 0.97827 1.23056 0.74669 1.01716 1.00595 1.86090 1.23991 1.26279 1.87003 1.18774 0.91495 0.84942 0.90912 1.21160 1.00444 0.92221 1.14579 1.20635 0.93721 0.96784 0.94393 1.20433 0.93753 0.96403 1.16041 1.17349 0.83204 0.92888 0.91937 1.44668 1.02616 1.07343 1.82794 1.20819 0.92893 0.85354 0.95801 1.22025 1.01422 0.96201 0.97443 1.21113 0.93748 0.97080 0.99753 1.21536 0.91637 1.02584 0.96639 1.23019 0.99483 0.99276 0.99348 1.22991 1.02913 0.92019 1.03452 1.21077 1.00807 0.95444 0.94104 1.21761 0.95320 0.97697 1.01357 1.19651 0.92055 0.96414 1.18108 0.92484 0.95467 0.95886 0.92491 0.92476 0.85503 0.86331 0.86567 0.76866 0.90345 0.91700 0.91130 0.91339 0.91637 0.88978 0.88930 0.88868 0.88909 0.91172 0.91462 0.91160 0.91411 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.53 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.23 4.41 -27.89 -0.12 -0.36 16 10 C 0.07 1.56 4.68 37.16 0.17 1.74 16 11 O -0.32 -6.50 10.13 -19.42 -0.20 -6.70 16 12 C 0.19 3.29 6.68 -39.25 -0.26 3.02 16 13 C -0.26 -4.25 9.04 -39.39 -0.36 -4.60 16 14 C -0.04 -0.49 10.03 -39.64 -0.40 -0.89 16 15 C -0.24 -3.06 8.80 -39.36 -0.35 -3.41 16 16 C 0.25 3.21 6.63 -83.81 -0.56 2.65 16 17 N -0.75 -7.26 5.24 -52.24 -0.27 -7.53 16 18 C 0.16 1.22 2.06 -67.99 -0.14 1.08 16 19 C -0.13 -1.01 5.41 -26.67 -0.14 -1.15 16 20 C -0.08 -0.50 5.67 -26.56 -0.15 -0.66 16 21 C -0.12 -0.74 1.97 -154.53 -0.31 -1.04 16 22 C -0.17 -0.99 9.93 -26.79 -0.27 -1.26 16 23 C -0.18 -0.96 9.99 -26.81 -0.27 -1.23 16 24 C -0.08 -0.43 5.67 -26.56 -0.15 -0.58 16 25 C -0.12 -0.78 5.39 -26.67 -0.14 -0.92 16 26 C -0.24 -3.65 9.83 -39.24 -0.39 -4.03 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 29 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 30 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 31 H 0.06 1.17 7.65 -51.93 -0.40 0.78 16 32 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.12 1.22 6.12 -52.49 -0.32 0.90 16 35 H 0.40 3.43 8.61 -40.82 -0.35 3.08 16 36 H 0.08 0.66 6.49 -51.93 -0.34 0.32 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.64 7.69 -51.93 -0.40 0.24 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.34 8.09 -51.92 -0.42 -0.08 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -30.76 386.06 -11.18 -41.93 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.38 Total: 1.03 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -4.25 Total: -24.97 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.50 Total: -34.24 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.20 Total: -6.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.76 -11.18 -41.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488332924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.413 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds