Wall clock time and date at job start Tue Mar 31 2020 12:35:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 119.99787 * 2 1
4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1
5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1
6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1
7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2
11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7
12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9
13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10
14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11
15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12
16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13
17 17 N 1.39666 * 120.04760 * 179.97438 * 16 15 14
18 18 C 1.46504 * 119.99487 * 0.02803 * 17 16 15
19 19 C 1.52941 * 109.41345 * 275.35547 * 18 17 16
20 20 C 1.53185 * 109.45230 * 176.91240 * 19 18 17
21 21 C 1.53143 * 108.88101 * 56.56625 * 20 19 18
22 22 C 1.52851 * 117.67619 * 91.49412 * 21 20 19
23 23 C 1.52808 * 117.74993 * 160.37396 * 21 20 19
24 24 C 1.53154 * 115.01084 * 306.06336 * 21 20 19
25 25 C 1.52946 * 109.41196 * 154.99647 * 18 17 16
26 26 C 1.38564 * 120.02346 * 180.02562 * 12 11 10
27 27 H 0.96994 * 119.99814 * 0.02562 * 1 2 3
28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2
29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2
30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
32 32 H 1.08000 * 119.95233 * 359.97438 * 13 12 11
33 33 H 1.08007 * 119.93154 * 180.25528 * 14 13 12
34 34 H 1.07998 * 119.98115 * 179.70100 * 15 14 13
35 35 H 0.96996 * 120.00573 * 180.02562 * 17 16 15
36 36 H 1.08995 * 109.41596 * 35.14631 * 18 17 16
37 37 H 1.09003 * 109.47446 * 296.91261 * 19 18 17
38 38 H 1.09000 * 109.47183 * 56.92334 * 19 18 17
39 39 H 1.08998 * 109.56848 * 296.75029 * 20 19 18
40 40 H 1.09003 * 109.66490 * 176.44512 * 20 19 18
41 41 H 1.08999 * 117.50614 * 215.21846 * 22 21 20
42 42 H 1.09001 * 117.50273 * 0.27543 * 22 21 20
43 43 H 1.09002 * 117.50418 * 359.85485 * 23 21 20
44 44 H 1.08998 * 117.50368 * 144.89761 * 23 21 20
45 45 H 1.09003 * 109.56699 * 294.11637 * 24 21 20
46 46 H 1.09009 * 109.57017 * 173.76040 * 24 21 20
47 47 H 1.09003 * 109.47310 * 303.08590 * 25 18 17
48 48 H 1.09003 * 109.47121 * 63.08881 * 25 18 17
49 49 H 1.07998 * 120.06257 * 359.97421 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4968 2.0464 -1.4001
5 1 1.4465 2.6528 0.6998
6 1 3.5467 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0014
9 6 3.5116 -1.1940 0.0011
10 6 4.0217 -2.6365 0.0023
11 8 5.4506 -2.6364 0.0034
12 6 6.0677 -3.8472 0.0040
13 6 5.3120 -5.0117 0.0093
14 6 5.9378 -6.2436 0.0041
15 6 7.3172 -6.3208 0.0052
16 6 8.0786 -5.1588 0.0057
17 7 9.4731 -5.2364 0.0073
18 6 10.1338 -6.5440 0.0080
19 6 10.2412 -7.0586 1.4442
20 6 10.8619 -8.4590 1.4393
21 6 12.2199 -8.3968 0.7342
22 6 13.4561 -8.1398 1.5957
23 6 13.2122 -9.5281 0.9999
24 6 12.1928 -7.7875 -0.6707
25 6 11.5306 -6.4081 -0.6001
26 6 7.4514 -3.9202 0.0057
27 1 -0.4849 0.8400 -0.0004
28 1 3.8746 -0.6799 0.8911
29 1 3.8752 -0.6803 -0.8888
30 1 3.6587 -3.1509 -0.8875
31 1 3.6580 -3.1497 0.8925
32 1 4.2335 -4.9546 0.0134
33 1 5.3473 -7.1480 0.0041
34 1 7.8038 -7.2850 0.0060
35 1 10.0041 -4.4247 0.0080
36 1 9.5477 -7.2464 -0.5846
37 1 10.8700 -6.3844 2.0257
38 1 9.2473 -7.1032 1.8894
39 1 10.2055 -9.1474 0.9070
40 1 10.9983 -8.8035 2.4644
41 1 14.2559 -7.5394 1.1621
42 1 13.3057 -8.0188 2.6685
43 1 12.9015 -10.3206 1.6808
44 1 13.8516 -9.8410 0.1746
45 1 11.6213 -8.4330 -1.3376
46 1 13.2118 -7.6847 -1.0439
47 1 11.4509 -5.9914 -1.6041
48 1 12.1345 -5.7464 0.0210
49 1 8.0409 -3.0153 0.0061
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000488332924.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:35:32
Heat of formation + Delta-G solvation = -10.520820 kcal
Electronic energy + Delta-G solvation = -25225.348132 eV
Core-core repulsion = 21731.116768 eV
Total energy + Delta-G solvation = -3494.231364 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.24506 -39.52390 -37.81827 -35.92652 -33.35327 -33.03387 -31.40970 -31.04001
-29.70782 -28.63819 -26.47911 -25.04931 -23.41651 -22.96510 -22.49473 -21.95263
-20.83554 -20.21872 -19.13953 -18.00268 -16.73908 -16.55062 -15.83080 -15.73681
-15.45051 -15.35686 -15.21285 -14.76533 -14.33416 -14.12724 -13.88547 -13.38478
-13.31507 -13.01439 -12.93218 -12.71667 -12.50803 -12.45307 -12.35739 -12.01054
-11.82025 -11.59326 -11.48632 -11.35125 -11.06972 -10.82283 -10.71139 -10.61991
-10.39812 -10.13677 -10.04041 -10.00777 -9.83574 -9.70701 -9.31368 -8.60282
-7.98392 -7.32635 -6.11412 -4.11972 1.70787 1.85964 3.13480 3.30082
3.37132 3.39271 3.43059 3.96600 4.08677 4.14517 4.26856 4.41029
4.41033 4.52514 4.63421 4.74969 4.88462 4.97679 5.06208 5.07713
5.22770 5.22833 5.27421 5.35150 5.37730 5.47008 5.48136 5.50982
5.54042 5.64150 5.66284 5.69544 5.73132 5.76565 5.79060 5.93892
5.99065 6.01886 6.04862 6.12471 6.40748 6.48601 6.62314 6.75917
6.86170 7.10818 7.26919 7.40598 7.64393 7.69601 8.02506 8.41463
8.89751 9.49066 11.01136
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.037644 B = 0.001953 C = 0.001902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 743.627162 B =14334.181670 C =14716.212303
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.072 3.928
3 Si 0.880 3.120
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.263 1.263
7 C -0.526 4.526
8 H 0.075 0.925
9 C -0.009 4.009
10 C 0.074 3.926
11 O -0.321 6.321
12 C 0.187 3.813
13 C -0.264 4.264
14 C -0.037 4.037
15 C -0.244 4.244
16 C 0.249 3.751
17 N -0.745 5.745
18 C 0.157 3.843
19 C -0.132 4.132
20 C -0.079 4.079
21 C -0.124 4.124
22 C -0.174 4.174
23 C -0.177 4.177
24 C -0.076 4.076
25 C -0.123 4.123
26 C -0.239 4.239
27 H 0.265 0.735
28 H 0.027 0.973
29 H 0.023 0.977
30 H 0.057 0.943
31 H 0.057 0.943
32 H 0.127 0.873
33 H 0.119 0.881
34 H 0.116 0.884
35 H 0.397 0.603
36 H 0.079 0.921
37 H 0.064 0.936
38 H 0.070 0.930
39 H 0.068 0.932
40 H 0.065 0.935
41 H 0.092 0.908
42 H 0.092 0.908
43 H 0.093 0.907
44 H 0.092 0.908
45 H 0.070 0.930
46 H 0.067 0.933
47 H 0.070 0.930
48 H 0.067 0.933
49 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 27.757 -19.122 0.892 33.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.130 4.130
3 Si 0.707 3.293
4 H -0.201 1.201
5 H -0.212 1.212
6 H -0.188 1.188
7 C -0.564 4.564
8 H 0.093 0.907
9 C -0.047 4.047
10 C 0.000 4.000
11 O -0.234 6.234
12 C 0.139 3.861
13 C -0.284 4.284
14 C -0.055 4.055
15 C -0.266 4.266
16 C 0.146 3.854
17 N -0.374 5.374
18 C 0.051 3.949
19 C -0.171 4.171
20 C -0.117 4.117
21 C -0.124 4.124
22 C -0.211 4.211
23 C -0.214 4.214
24 C -0.114 4.114
25 C -0.161 4.161
26 C -0.262 4.262
27 H 0.075 0.925
28 H 0.045 0.955
29 H 0.041 0.959
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.145 0.855
33 H 0.137 0.863
34 H 0.134 0.866
35 H 0.231 0.769
36 H 0.097 0.903
37 H 0.083 0.917
38 H 0.089 0.911
39 H 0.087 0.913
40 H 0.084 0.916
41 H 0.110 0.890
42 H 0.111 0.889
43 H 0.111 0.889
44 H 0.111 0.889
45 H 0.088 0.912
46 H 0.085 0.915
47 H 0.088 0.912
48 H 0.086 0.914
49 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 27.709 -18.977 0.887 33.596
hybrid contribution 0.352 1.038 0.061 1.097
sum 28.061 -17.939 0.949 33.318
Atomic orbital electron populations
1.69894 1.06259 1.27167 1.50310 1.24935 0.94760 0.99188 0.94156
0.86758 0.80466 0.83307 0.78745 1.20081 1.21199 1.18758 1.20854
0.88384 0.94936 1.52191 0.90720 1.19588 0.96881 0.90392 0.97827
1.23056 0.74669 1.01716 1.00595 1.86090 1.23991 1.26279 1.87003
1.18774 0.91495 0.84942 0.90912 1.21160 1.00444 0.92221 1.14579
1.20635 0.93721 0.96784 0.94393 1.20433 0.93753 0.96403 1.16041
1.17349 0.83204 0.92888 0.91937 1.44668 1.02616 1.07343 1.82794
1.20819 0.92893 0.85354 0.95801 1.22025 1.01422 0.96201 0.97443
1.21113 0.93748 0.97080 0.99753 1.21536 0.91637 1.02584 0.96639
1.23019 0.99483 0.99276 0.99348 1.22991 1.02913 0.92019 1.03452
1.21077 1.00807 0.95444 0.94104 1.21761 0.95320 0.97697 1.01357
1.19651 0.92055 0.96414 1.18108 0.92484 0.95467 0.95886 0.92491
0.92476 0.85503 0.86331 0.86567 0.76866 0.90345 0.91700 0.91130
0.91339 0.91637 0.88978 0.88930 0.88868 0.88909 0.91172 0.91462
0.91160 0.91411 0.85902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16
2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16
3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16
4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16
7 C -0.53 -15.00 9.66 -34.44 -0.33 -15.33 16
8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16
9 C -0.01 -0.23 4.41 -27.89 -0.12 -0.36 16
10 C 0.07 1.56 4.68 37.16 0.17 1.74 16
11 O -0.32 -6.50 10.13 -19.42 -0.20 -6.70 16
12 C 0.19 3.29 6.68 -39.25 -0.26 3.02 16
13 C -0.26 -4.25 9.04 -39.39 -0.36 -4.60 16
14 C -0.04 -0.49 10.03 -39.64 -0.40 -0.89 16
15 C -0.24 -3.06 8.80 -39.36 -0.35 -3.41 16
16 C 0.25 3.21 6.63 -83.81 -0.56 2.65 16
17 N -0.75 -7.26 5.24 -52.24 -0.27 -7.53 16
18 C 0.16 1.22 2.06 -67.99 -0.14 1.08 16
19 C -0.13 -1.01 5.41 -26.67 -0.14 -1.15 16
20 C -0.08 -0.50 5.67 -26.56 -0.15 -0.66 16
21 C -0.12 -0.74 1.97 -154.53 -0.31 -1.04 16
22 C -0.17 -0.99 9.93 -26.79 -0.27 -1.26 16
23 C -0.18 -0.96 9.99 -26.81 -0.27 -1.23 16
24 C -0.08 -0.43 5.67 -26.56 -0.15 -0.58 16
25 C -0.12 -0.78 5.39 -26.67 -0.14 -0.92 16
26 C -0.24 -3.65 9.83 -39.24 -0.39 -4.03 16
27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16
28 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16
29 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16
30 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16
31 H 0.06 1.17 7.65 -51.93 -0.40 0.78 16
32 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16
33 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16
34 H 0.12 1.22 6.12 -52.49 -0.32 0.90 16
35 H 0.40 3.43 8.61 -40.82 -0.35 3.08 16
36 H 0.08 0.66 6.49 -51.93 -0.34 0.32 16
37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.07 0.64 7.69 -51.93 -0.40 0.24 16
39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16
41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16
43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16
45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
46 H 0.07 0.34 8.09 -51.92 -0.42 -0.08 16
47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
49 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16
LS Contribution 386.06 15.07 5.82 5.82
Total: -1.00 -30.76 386.06 -11.18 -41.93
By element:
Atomic # 1 Polarization: 9.41 SS G_CDS: -8.38 Total: 1.03 kcal
Atomic # 6 Polarization: -20.72 SS G_CDS: -4.25 Total: -24.97 kcal
Atomic # 7 Polarization: -34.74 SS G_CDS: 0.50 Total: -34.24 kcal
Atomic # 8 Polarization: -6.50 SS G_CDS: -0.20 Total: -6.70 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -30.76 -11.18 -41.93 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000488332924.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.413 kcal
(2) G-P(sol) polarization free energy of solvation -30.755 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.658 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.521 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds