Wall clock time and date at job start Tue Mar 31 2020 12:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39666 * 120.04760 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99487 * 0.02803 * 17 16 15 19 19 C 1.52941 * 109.41345 * 275.35547 * 18 17 16 20 20 C 1.53185 * 109.45230 * 176.91240 * 19 18 17 21 21 C 1.53143 * 108.88101 * 56.56625 * 20 19 18 22 22 C 1.52851 * 117.67619 * 91.49412 * 21 20 19 23 23 C 1.52808 * 117.74993 * 160.37396 * 21 20 19 24 24 C 1.53154 * 115.01084 * 306.06336 * 21 20 19 25 25 C 1.52946 * 109.41196 * 154.99647 * 18 17 16 26 26 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 27 27 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08000 * 119.95233 * 359.97438 * 13 12 11 33 33 H 1.08007 * 119.93154 * 180.25528 * 14 13 12 34 34 H 1.07998 * 119.98115 * 179.70100 * 15 14 13 35 35 H 0.96996 * 120.00573 * 180.02562 * 17 16 15 36 36 H 1.08995 * 109.41596 * 35.14631 * 18 17 16 37 37 H 1.09003 * 109.47446 * 296.91261 * 19 18 17 38 38 H 1.09000 * 109.47183 * 56.92334 * 19 18 17 39 39 H 1.08998 * 109.56848 * 296.75029 * 20 19 18 40 40 H 1.09003 * 109.66490 * 176.44512 * 20 19 18 41 41 H 1.08999 * 117.50614 * 215.21846 * 22 21 20 42 42 H 1.09001 * 117.50273 * 0.27543 * 22 21 20 43 43 H 1.09002 * 117.50418 * 359.85485 * 23 21 20 44 44 H 1.08998 * 117.50368 * 144.89761 * 23 21 20 45 45 H 1.09003 * 109.56699 * 294.11637 * 24 21 20 46 46 H 1.09009 * 109.57017 * 173.76040 * 24 21 20 47 47 H 1.09003 * 109.47310 * 303.08590 * 25 18 17 48 48 H 1.09003 * 109.47121 * 63.08881 * 25 18 17 49 49 H 1.07998 * 120.06257 * 359.97421 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 8 5.4506 -2.6364 0.0034 12 6 6.0677 -3.8472 0.0040 13 6 5.3120 -5.0117 0.0093 14 6 5.9378 -6.2436 0.0041 15 6 7.3172 -6.3208 0.0052 16 6 8.0786 -5.1588 0.0057 17 7 9.4731 -5.2364 0.0073 18 6 10.1338 -6.5440 0.0080 19 6 10.2412 -7.0586 1.4442 20 6 10.8619 -8.4590 1.4393 21 6 12.2199 -8.3968 0.7342 22 6 13.4561 -8.1398 1.5957 23 6 13.2122 -9.5281 0.9999 24 6 12.1928 -7.7875 -0.6707 25 6 11.5306 -6.4081 -0.6001 26 6 7.4514 -3.9202 0.0057 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 3.6587 -3.1509 -0.8875 31 1 3.6580 -3.1497 0.8925 32 1 4.2335 -4.9546 0.0134 33 1 5.3473 -7.1480 0.0041 34 1 7.8038 -7.2850 0.0060 35 1 10.0041 -4.4247 0.0080 36 1 9.5477 -7.2464 -0.5846 37 1 10.8700 -6.3844 2.0257 38 1 9.2473 -7.1032 1.8894 39 1 10.2055 -9.1474 0.9070 40 1 10.9983 -8.8035 2.4644 41 1 14.2559 -7.5394 1.1621 42 1 13.3057 -8.0188 2.6685 43 1 12.9015 -10.3206 1.6808 44 1 13.8516 -9.8410 0.1746 45 1 11.6213 -8.4330 -1.3376 46 1 13.2118 -7.6847 -1.0439 47 1 11.4509 -5.9914 -1.6041 48 1 12.1345 -5.7464 0.0210 49 1 8.0409 -3.0153 0.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488332924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:31 Heat of formation + Delta-G solvation = -25.902686 kcal Electronic energy + Delta-G solvation = -25226.015140 eV Core-core repulsion = 21731.116768 eV Total energy + Delta-G solvation = -3494.898372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.16839 -40.42658 -38.91332 -36.79498 -35.39446 -33.87277 -32.90916 -31.91676 -30.97377 -29.66705 -27.43022 -26.70001 -24.10419 -23.56130 -23.47215 -23.07349 -22.02620 -21.46106 -19.71980 -19.40223 -18.58379 -17.42563 -16.95615 -16.89631 -16.60126 -16.35448 -16.21284 -15.91304 -15.70301 -14.99966 -14.77112 -14.48010 -14.42866 -14.35151 -14.10736 -13.83920 -13.43484 -13.28724 -13.22259 -13.10791 -12.89333 -12.62431 -12.38434 -12.34393 -12.24537 -12.01685 -11.96412 -11.83127 -11.70898 -11.52852 -11.41317 -11.24003 -10.86069 -10.81812 -10.71750 -10.47469 -9.22223 -8.35125 -8.32361 -6.41860 0.57778 0.70089 1.35593 1.36993 1.50029 2.16422 2.33019 2.66553 2.94137 2.96790 2.99637 3.65181 3.76629 3.92598 3.99168 4.07825 4.11822 4.19601 4.23874 4.23972 4.28045 4.34351 4.39501 4.44996 4.48498 4.55978 4.65027 4.69425 4.79778 4.83490 4.87432 4.94481 5.01159 5.03645 5.08990 5.12471 5.14752 5.21266 5.26566 5.30213 5.31645 5.33680 5.44020 5.49970 5.51110 5.52990 5.67203 5.75492 6.16218 6.43261 6.59451 6.63590 6.85011 7.23205 8.80597 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.037644 B = 0.001953 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.627162 B =14334.181670 C =14716.212303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.538 4.538 8 H 0.042 0.958 9 C -0.006 4.006 10 C 0.089 3.911 11 O -0.336 6.336 12 C 0.154 3.846 13 C -0.284 4.284 14 C -0.034 4.034 15 C -0.237 4.237 16 C 0.256 3.744 17 N -0.735 5.735 18 C 0.156 3.844 19 C -0.126 4.126 20 C -0.076 4.076 21 C -0.129 4.129 22 C -0.178 4.178 23 C -0.174 4.174 24 C -0.074 4.074 25 C -0.117 4.117 26 C -0.250 4.250 27 H 0.270 0.730 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.403 0.597 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.712 -19.999 0.677 36.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.575 4.575 8 H 0.060 0.940 9 C -0.044 4.044 10 C 0.014 3.986 11 O -0.250 6.250 12 C 0.107 3.893 13 C -0.305 4.305 14 C -0.053 4.053 15 C -0.259 4.259 16 C 0.151 3.849 17 N -0.363 5.363 18 C 0.051 3.949 19 C -0.165 4.165 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.215 4.215 23 C -0.211 4.211 24 C -0.112 4.112 25 C -0.155 4.155 26 C -0.273 4.273 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 30.714 -19.881 0.673 36.593 hybrid contribution -0.465 1.126 0.144 1.227 sum 30.249 -18.755 0.817 35.601 Atomic orbital electron populations 1.70026 1.08066 1.28503 1.51537 1.25880 0.95645 1.03295 0.93628 0.85673 0.79398 0.78293 0.79435 1.18905 1.20331 1.17522 1.21114 0.90512 0.93924 1.51982 0.94009 1.19447 0.94399 0.92744 0.97768 1.22640 0.75933 0.99392 1.00624 1.85998 1.22749 1.28179 1.88123 1.19085 0.92459 0.84339 0.93391 1.21206 1.00085 0.93006 1.16170 1.20939 0.94488 0.96684 0.93144 1.20750 0.93458 0.97375 1.14337 1.17417 0.84609 0.92176 0.90678 1.44803 1.01481 1.08682 1.81368 1.20970 0.93624 0.84192 0.96113 1.21945 1.00678 0.96962 0.96931 1.21082 0.94074 0.96193 1.00054 1.21542 0.91404 1.03187 0.96784 1.23058 0.99488 0.99653 0.99270 1.23044 1.02555 0.91903 1.03593 1.21071 1.01249 0.94859 0.93980 1.21707 0.94218 0.98324 1.01264 1.19775 0.91247 0.97665 1.18649 0.92081 0.95466 0.95518 0.92513 0.92570 0.86493 0.83705 0.84007 0.76123 0.90330 0.92149 0.92443 0.90978 0.91512 0.88599 0.89154 0.88669 0.88266 0.90907 0.90636 0.91004 0.91213 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 7 C -0.54 -31.50 9.66 25.60 0.25 -31.26 16 8 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 9 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16 10 C 0.09 3.86 4.68 71.98 0.34 4.20 16 11 O -0.34 -13.86 10.13 -92.39 -0.94 -14.80 16 12 C 0.15 5.45 6.68 22.49 0.15 5.60 16 13 C -0.28 -9.19 9.04 22.39 0.20 -8.99 16 14 C -0.03 -0.86 10.03 22.23 0.22 -0.64 16 15 C -0.24 -5.40 8.80 22.42 0.20 -5.20 16 16 C 0.26 6.16 6.63 38.20 0.25 6.41 16 17 N -0.74 -12.74 5.24 -319.19 -1.67 -14.41 16 18 C 0.16 2.04 2.06 44.95 0.09 2.14 16 19 C -0.13 -1.66 5.41 30.64 0.17 -1.49 16 20 C -0.08 -0.80 5.67 30.70 0.17 -0.63 16 21 C -0.13 -1.23 1.97 -52.20 -0.10 -1.33 16 22 C -0.18 -1.66 9.93 30.56 0.30 -1.36 16 23 C -0.17 -1.50 9.99 30.54 0.31 -1.19 16 24 C -0.07 -0.63 5.67 30.70 0.17 -0.46 16 25 C -0.12 -1.17 5.39 30.63 0.17 -1.01 16 26 C -0.25 -7.48 9.83 22.49 0.22 -7.26 16 27 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 29 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 30 H 0.06 2.42 7.67 -2.39 -0.02 2.40 16 31 H 0.06 2.40 7.65 -2.39 -0.02 2.38 16 32 H 0.12 3.91 6.29 -2.91 -0.02 3.89 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.14 2.50 6.12 -2.91 -0.02 2.48 16 35 H 0.40 6.14 8.61 -92.71 -0.80 5.34 16 36 H 0.08 1.08 6.49 -2.39 -0.02 1.06 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.92 7.69 -2.39 -0.02 0.90 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 0.56 8.09 -2.38 -0.02 0.54 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -66.83 386.06 3.35 -63.48 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.07 Total: 18.89 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 3.70 Total: -41.36 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.37 Total: -72.95 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.94 Total: -14.80 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -66.83 3.35 -63.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488332924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.575 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds