Wall clock time and date at job start Tue Mar 31 2020 11:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37709 * 127.18365 * 2 1 4 4 C 1.47225 * 126.50146 * 359.97438 * 3 2 1 5 5 C 1.36528 * 126.09430 * 163.72146 * 4 3 2 6 6 C 1.40343 * 107.32809 * 180.02562 * 5 4 3 7 7 C 1.35105 * 107.74899 * 359.73889 * 6 5 4 8 8 N 1.36343 * 108.53763 * 0.42295 * 7 6 5 9 9 H 0.96999 * 125.71775 * 179.82416 * 8 7 6 10 10 N 1.31469 * 106.99134 * 180.26090 * 3 2 1 11 11 N 1.28498 * 109.93365 * 359.61613 * 10 3 2 12 12 C 1.31298 * 110.15255 * 0.39499 * 11 10 3 13 13 N 1.38488 * 126.35704 * 179.78212 * 12 11 10 14 14 C 1.46845 * 110.99939 * 106.26586 * 13 12 11 15 15 C 1.53039 * 109.52606 * 174.15982 * 14 13 12 16 16 C 1.53121 * 109.27487 * 59.17963 * 15 14 13 17 17 C 1.52992 * 109.52346 * 182.44055 * 16 15 14 18 18 C 1.50700 * 109.47456 * 294.68304 * 17 16 15 19 19 H 1.07996 * 119.99780 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00254 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47436 * 60.00178 * 22 20 18 24 24 H 1.48510 * 109.47193 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47028 * 300.00032 * 22 20 18 26 26 C 1.53124 * 109.16224 * 302.34659 * 16 15 14 27 27 C 1.46844 * 110.99918 * 342.06034 * 13 12 11 28 28 H 1.09005 * 109.46969 * 84.55485 * 1 2 3 29 29 H 1.09002 * 109.47118 * 204.54901 * 1 2 3 30 30 H 1.08995 * 109.47043 * 324.55264 * 1 2 3 31 31 H 1.08000 * 126.33305 * 0.03700 * 5 4 3 32 32 H 1.07996 * 126.12229 * 179.97438 * 6 5 4 33 33 H 1.08004 * 125.73323 * 180.25887 * 7 6 5 34 34 H 1.08998 * 109.46503 * 294.17809 * 14 13 12 35 35 H 1.09004 * 109.46121 * 54.14481 * 14 13 12 36 36 H 1.08997 * 109.50664 * 299.24351 * 15 14 13 37 37 H 1.08997 * 109.50479 * 179.12242 * 15 14 13 38 38 H 1.09005 * 109.52353 * 62.25342 * 16 15 14 39 39 H 1.09007 * 109.47349 * 54.68649 * 17 16 15 40 40 H 1.09004 * 109.47379 * 174.67974 * 17 16 15 41 41 H 0.97001 * 120.00217 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.50113 * 297.71841 * 26 16 15 43 43 H 1.08995 * 109.50213 * 177.58933 * 26 16 15 44 44 H 1.09004 * 109.45917 * 305.84763 * 27 13 12 45 45 H 1.09000 * 109.46816 * 65.81810 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2973 1.0971 0.0000 4 6 1.8837 2.5101 -0.0005 5 6 2.6740 3.5796 0.3087 6 6 1.8847 4.7331 0.1821 7 6 0.6485 4.3461 -0.2022 8 7 0.6342 2.9872 -0.3116 9 1 -0.1296 2.4479 -0.5698 10 7 3.5312 0.6433 -0.0057 11 7 3.5254 -0.6416 -0.0011 12 6 2.2908 -1.0884 -0.0007 13 7 1.8983 -2.4165 -0.0006 14 6 1.3814 -2.8124 1.3156 15 6 0.8246 -4.2359 1.2395 16 6 1.9373 -5.1910 0.7990 17 6 1.3721 -6.6061 0.6622 18 6 0.9393 -7.1073 2.0159 19 1 1.0553 -6.4791 2.8867 20 6 0.3941 -8.3673 2.1426 21 7 0.2514 -9.1317 1.0820 22 14 -0.1430 -8.9882 3.8205 23 1 -1.1886 -8.0881 4.3700 24 1 -0.6916 -10.3618 3.6877 25 1 1.0246 -9.0086 4.7378 26 6 2.4914 -4.7285 -0.5515 27 6 2.9999 -3.2908 -0.4233 28 1 -0.3633 0.0975 -1.0231 29 1 -0.3633 -0.9348 0.4270 30 1 -0.3633 0.8371 0.5960 31 1 3.7142 3.5444 0.5971 32 1 2.2085 5.7484 0.3566 33 1 -0.1885 5.0028 -0.3886 34 1 2.1876 -2.7765 2.0483 35 1 0.5880 -2.1276 1.6151 36 1 0.0091 -4.2695 0.5171 37 1 0.4552 -4.5351 2.2203 38 1 2.7358 -5.1869 1.5411 39 1 0.5148 -6.5915 -0.0110 40 1 2.1396 -7.2666 0.2586 41 1 -0.1318 -10.0184 1.1712 42 1 1.7021 -4.7698 -1.3020 43 1 3.3129 -5.3797 -0.8500 44 1 3.3819 -2.9535 -1.3868 45 1 3.7986 -3.2527 0.3175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573722781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:15 Heat of formation + Delta-G solvation = 124.814028 kcal Electronic energy + Delta-G solvation = -25923.603910 eV Core-core repulsion = 22363.993513 eV Total energy + Delta-G solvation = -3559.610397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.03205 -41.21884 -38.93454 -35.30624 -34.69063 -32.46360 -31.41261 -31.00088 -30.66065 -28.63927 -27.77623 -27.12978 -24.34089 -23.34841 -22.43566 -21.87965 -21.02461 -20.85286 -20.09152 -19.07677 -18.48410 -17.15624 -16.59714 -16.34716 -16.06764 -14.99018 -14.69727 -14.58108 -14.41812 -14.13919 -14.09498 -13.66895 -13.60481 -13.23852 -13.03693 -12.92210 -12.62481 -12.51109 -12.14414 -11.84320 -11.63974 -11.29978 -11.00049 -10.86940 -10.81260 -10.65933 -10.43957 -10.40801 -10.09995 -10.01503 -9.67044 -9.29585 -9.18538 -8.97294 -8.76589 -8.37289 -7.90289 -6.02186 -4.04273 1.02865 1.92402 2.09689 2.56757 2.65390 3.06631 3.29912 3.35312 3.37046 3.63384 4.06568 4.19685 4.42942 4.62292 4.71219 4.81138 4.91872 4.93556 5.07494 5.18704 5.24282 5.33658 5.39982 5.44600 5.53413 5.65153 5.69534 5.75618 5.80840 5.99147 6.00600 6.08161 6.21847 6.31809 6.39104 6.51831 6.56049 6.65186 6.74271 6.96544 6.96942 7.02915 7.06570 7.19589 7.64496 7.79280 7.97506 8.39801 8.62130 9.01971 9.59550 11.08920 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.002507 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.108913 B =11165.227540 C =11618.793330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.483 5.483 3 C 0.233 3.767 4 C 0.077 3.923 5 C -0.130 4.130 6 C -0.200 4.200 7 C 0.008 3.992 8 N -0.559 5.559 9 H 0.412 0.588 10 N -0.257 5.257 11 N -0.315 5.315 12 C 0.375 3.625 13 N -0.456 5.456 14 C 0.059 3.941 15 C -0.098 4.098 16 C -0.084 4.084 17 C 0.029 3.971 18 C -0.517 4.517 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.113 4.113 27 C 0.075 3.925 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.171 0.829 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 25.158 -3.536 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.179 5.179 3 C -0.031 4.031 4 C -0.036 4.036 5 C -0.157 4.157 6 C -0.225 4.225 7 C -0.125 4.125 8 N -0.156 5.156 9 H 0.250 0.750 10 N -0.098 5.098 11 N -0.161 5.161 12 C 0.019 3.981 13 N -0.181 5.181 14 C -0.068 4.068 15 C -0.136 4.136 16 C -0.103 4.103 17 C -0.008 4.008 18 C -0.556 4.556 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.151 4.151 27 C -0.051 4.051 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.188 0.812 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.426 24.729 -3.970 25.086 hybrid contribution -1.754 -0.634 1.224 2.230 sum -3.180 24.095 -2.746 24.459 Atomic orbital electron populations 1.22171 0.75688 1.05542 1.03775 1.46179 1.08327 1.05814 1.57568 1.21560 0.87185 0.86241 1.08151 1.16928 0.86336 0.87651 1.12693 1.21016 0.99923 0.90112 1.04683 1.20907 0.93404 0.98993 1.09178 1.22006 1.00385 0.82557 1.07516 1.42187 1.10549 1.07640 1.55265 0.75046 1.74399 1.15584 1.02789 1.17070 1.74704 1.15855 1.02849 1.22668 1.22720 0.85830 0.88152 1.01354 1.58768 1.35277 0.95281 1.28764 1.22440 0.98841 0.99347 0.86138 1.21609 0.98891 0.89982 1.03142 1.21295 0.96636 0.97924 0.94431 1.19101 0.95920 0.88760 0.96990 1.21196 1.40549 0.99886 0.93944 0.92755 1.25013 0.96038 0.97008 0.96363 1.69949 1.45169 1.09698 1.28603 0.86714 0.78953 0.77922 0.84723 1.20344 1.21345 1.20289 1.21781 1.01126 0.92519 0.99693 1.22135 0.89843 0.92352 1.00795 0.89919 0.87672 0.90135 0.83419 0.83850 0.81172 0.93446 0.91628 0.91484 0.89921 0.92428 0.96475 0.96490 0.92978 0.91402 0.90949 0.90524 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 9.87 59.85 0.59 1.14 16 2 N -0.48 -5.96 3.24 -122.14 -0.40 -6.36 16 3 C 0.23 3.14 7.90 -153.74 -1.21 1.93 16 4 C 0.08 0.83 6.92 -82.37 -0.57 0.26 16 5 C -0.13 -1.34 10.80 -39.41 -0.43 -1.77 16 6 C -0.20 -1.57 10.83 -39.90 -0.43 -2.00 16 7 C 0.01 0.05 11.92 -16.66 -0.20 -0.15 16 8 N -0.56 -4.11 5.70 -9.51 -0.05 -4.17 16 9 H 0.41 2.01 6.94 -40.82 -0.28 1.73 16 10 N -0.26 -4.23 12.23 32.50 0.40 -3.83 16 11 N -0.32 -5.42 11.42 30.34 0.35 -5.08 16 12 C 0.37 5.66 6.89 -318.67 -2.20 3.46 16 13 N -0.46 -6.72 4.63 -174.50 -0.81 -7.53 16 14 C 0.06 0.85 5.22 -3.83 -0.02 0.83 16 15 C -0.10 -1.67 5.15 -26.65 -0.14 -1.80 16 16 C -0.08 -1.61 2.20 -90.50 -0.20 -1.81 16 17 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 18 C -0.52 -13.88 8.45 -34.44 -0.29 -14.17 16 19 H 0.05 1.41 7.08 -52.49 -0.37 1.04 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 22 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 C -0.11 -1.86 5.38 -26.65 -0.14 -2.01 16 27 C 0.08 1.15 4.87 -3.83 -0.02 1.13 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.82 6.29 -51.93 -0.33 0.50 16 30 H 0.08 0.44 6.91 -51.93 -0.36 0.08 16 31 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.17 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.81 6.37 -51.93 -0.33 0.48 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.49 7.05 -51.93 -0.37 1.12 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 45 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -33.03 362.13 -11.48 -44.51 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.66 Total: -0.71 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -5.48 Total: -12.88 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.22 Total: -52.50 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.03 -11.48 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573722781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.326 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds