Wall clock time and date at job start Tue Mar 31 2020 11:03:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.37709 * 127.18365 * 2 1
4 4 C 1.47225 * 126.50146 * 359.97438 * 3 2 1
5 5 C 1.36528 * 126.09430 * 163.72146 * 4 3 2
6 6 C 1.40343 * 107.32809 * 180.02562 * 5 4 3
7 7 C 1.35105 * 107.74899 * 359.73889 * 6 5 4
8 8 N 1.36343 * 108.53763 * 0.42295 * 7 6 5
9 9 H 0.96999 * 125.71775 * 179.82416 * 8 7 6
10 10 N 1.31469 * 106.99134 * 180.26090 * 3 2 1
11 11 N 1.28498 * 109.93365 * 359.61613 * 10 3 2
12 12 C 1.31298 * 110.15255 * 0.39499 * 11 10 3
13 13 N 1.38488 * 126.35704 * 179.78212 * 12 11 10
14 14 C 1.46845 * 110.99939 * 106.26586 * 13 12 11
15 15 C 1.53039 * 109.52606 * 174.15982 * 14 13 12
16 16 C 1.53121 * 109.27487 * 59.17963 * 15 14 13
17 17 C 1.52992 * 109.52346 * 182.44055 * 16 15 14
18 18 C 1.50700 * 109.47456 * 294.68304 * 17 16 15
19 19 H 1.07996 * 119.99780 * 0.02562 * 18 17 16
20 20 C 1.37872 * 120.00254 * 179.97438 * 18 17 16
21 21 N 1.31517 * 120.00109 * 359.97438 * 20 18 17
22 22 Si 1.86798 * 120.00047 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47436 * 60.00178 * 22 20 18
24 24 H 1.48510 * 109.47193 * 180.02562 * 22 20 18
25 25 H 1.48497 * 109.47028 * 300.00032 * 22 20 18
26 26 C 1.53124 * 109.16224 * 302.34659 * 16 15 14
27 27 C 1.46844 * 110.99918 * 342.06034 * 13 12 11
28 28 H 1.09005 * 109.46969 * 84.55485 * 1 2 3
29 29 H 1.09002 * 109.47118 * 204.54901 * 1 2 3
30 30 H 1.08995 * 109.47043 * 324.55264 * 1 2 3
31 31 H 1.08000 * 126.33305 * 0.03700 * 5 4 3
32 32 H 1.07996 * 126.12229 * 179.97438 * 6 5 4
33 33 H 1.08004 * 125.73323 * 180.25887 * 7 6 5
34 34 H 1.08998 * 109.46503 * 294.17809 * 14 13 12
35 35 H 1.09004 * 109.46121 * 54.14481 * 14 13 12
36 36 H 1.08997 * 109.50664 * 299.24351 * 15 14 13
37 37 H 1.08997 * 109.50479 * 179.12242 * 15 14 13
38 38 H 1.09005 * 109.52353 * 62.25342 * 16 15 14
39 39 H 1.09007 * 109.47349 * 54.68649 * 17 16 15
40 40 H 1.09004 * 109.47379 * 174.67974 * 17 16 15
41 41 H 0.97001 * 120.00217 * 179.97438 * 21 20 18
42 42 H 1.09000 * 109.50113 * 297.71841 * 26 16 15
43 43 H 1.08995 * 109.50213 * 177.58933 * 26 16 15
44 44 H 1.09004 * 109.45917 * 305.84763 * 27 13 12
45 45 H 1.09000 * 109.46816 * 65.81810 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2973 1.0971 0.0000
4 6 1.8837 2.5101 -0.0005
5 6 2.6740 3.5796 0.3087
6 6 1.8847 4.7331 0.1821
7 6 0.6485 4.3461 -0.2022
8 7 0.6342 2.9872 -0.3116
9 1 -0.1296 2.4479 -0.5698
10 7 3.5312 0.6433 -0.0057
11 7 3.5254 -0.6416 -0.0011
12 6 2.2908 -1.0884 -0.0007
13 7 1.8983 -2.4165 -0.0006
14 6 1.3814 -2.8124 1.3156
15 6 0.8246 -4.2359 1.2395
16 6 1.9373 -5.1910 0.7990
17 6 1.3721 -6.6061 0.6622
18 6 0.9393 -7.1073 2.0159
19 1 1.0553 -6.4791 2.8867
20 6 0.3941 -8.3673 2.1426
21 7 0.2514 -9.1317 1.0820
22 14 -0.1430 -8.9882 3.8205
23 1 -1.1886 -8.0881 4.3700
24 1 -0.6916 -10.3618 3.6877
25 1 1.0246 -9.0086 4.7378
26 6 2.4914 -4.7285 -0.5515
27 6 2.9999 -3.2908 -0.4233
28 1 -0.3633 0.0975 -1.0231
29 1 -0.3633 -0.9348 0.4270
30 1 -0.3633 0.8371 0.5960
31 1 3.7142 3.5444 0.5971
32 1 2.2085 5.7484 0.3566
33 1 -0.1885 5.0028 -0.3886
34 1 2.1876 -2.7765 2.0483
35 1 0.5880 -2.1276 1.6151
36 1 0.0091 -4.2695 0.5171
37 1 0.4552 -4.5351 2.2203
38 1 2.7358 -5.1869 1.5411
39 1 0.5148 -6.5915 -0.0110
40 1 2.1396 -7.2666 0.2586
41 1 -0.1318 -10.0184 1.1712
42 1 1.7021 -4.7698 -1.3020
43 1 3.3129 -5.3797 -0.8500
44 1 3.3819 -2.9535 -1.3868
45 1 3.7986 -3.2527 0.3175
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000573722781.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:14
Heat of formation + Delta-G solvation = 106.774343 kcal
Electronic energy + Delta-G solvation = -25924.386169 eV
Core-core repulsion = 22363.993513 eV
Total energy + Delta-G solvation = -3560.392656 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.175 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-44.06300 -41.86326 -40.23826 -36.49637 -36.01910 -34.34454 -32.19586 -31.98323
-31.88081 -30.01212 -28.54604 -28.40594 -26.04882 -24.50799 -23.57859 -23.18031
-22.12196 -21.68114 -20.96011 -20.44417 -19.29561 -18.39519 -18.14377 -17.57946
-17.16295 -16.53657 -15.97805 -15.64767 -15.29242 -15.16309 -15.06879 -14.75802
-14.67160 -14.48276 -14.24800 -13.97313 -13.61734 -13.47714 -13.32902 -13.15056
-13.05234 -12.85676 -12.70482 -12.54919 -12.29740 -12.16292 -11.89729 -11.67250
-11.38068 -11.30940 -11.07383 -10.98015 -10.78004 -10.50336 -9.92646 -9.79478
-8.77493 -8.15515 -6.24615 0.14600 0.97991 1.20919 1.41214 1.43249
1.50717 1.78785 2.03557 2.21960 2.42909 2.55915 3.18002 3.30979
3.49468 3.67185 3.84332 3.91104 4.04832 4.11488 4.15058 4.27303
4.30466 4.36751 4.42726 4.46297 4.54965 4.61269 4.65636 4.72899
4.75639 4.85167 4.94419 5.07622 5.20979 5.30132 5.31673 5.33606
5.40197 5.45363 5.56876 5.64005 5.82173 5.86890 5.90915 5.97080
6.09066 6.30796 6.55258 6.91546 7.43686 7.54526 8.95920
Molecular weight = 315.18amu
Principal moments of inertia in cm(-1)
A = 0.028796 B = 0.002507 C = 0.002409
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.108913 B =11165.227540 C =11618.793330
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.060 3.940
2 N -0.477 5.477
3 C 0.250 3.750
4 C 0.042 3.958
5 C -0.141 4.141
6 C -0.219 4.219
7 C 0.038 3.962
8 N -0.547 5.547
9 H 0.425 0.575
10 N -0.304 5.304
11 N -0.349 5.349
12 C 0.362 3.638
13 N -0.450 5.450
14 C 0.069 3.931
15 C -0.089 4.089
16 C -0.078 4.078
17 C 0.036 3.964
18 C -0.529 4.529
19 H 0.062 0.938
20 C -0.001 4.001
21 N -0.934 5.934
22 Si 0.957 3.043
23 H -0.265 1.265
24 H -0.287 1.287
25 H -0.271 1.271
26 C -0.103 4.103
27 C 0.085 3.915
28 H 0.105 0.895
29 H 0.106 0.894
30 H 0.106 0.894
31 H 0.135 0.865
32 H 0.162 0.838
33 H 0.215 0.785
34 H 0.038 0.962
35 H 0.093 0.907
36 H 0.066 0.934
37 H 0.072 0.928
38 H 0.050 0.950
39 H -0.005 1.005
40 H -0.013 1.013
41 H 0.261 0.739
42 H 0.067 0.933
43 H 0.073 0.927
44 H 0.081 0.919
45 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.583 27.958 -2.905 28.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 N -0.172 5.172
3 C -0.015 4.015
4 C -0.071 4.071
5 C -0.170 4.170
6 C -0.242 4.242
7 C -0.096 4.096
8 N -0.146 5.146
9 H 0.265 0.735
10 N -0.144 5.144
11 N -0.194 5.194
12 C 0.005 3.995
13 N -0.175 5.175
14 C -0.057 4.057
15 C -0.127 4.127
16 C -0.097 4.097
17 C -0.001 4.001
18 C -0.567 4.567
19 H 0.080 0.920
20 C -0.198 4.198
21 N -0.575 5.575
22 Si 0.782 3.218
23 H -0.190 1.190
24 H -0.213 1.213
25 H -0.196 1.196
26 C -0.141 4.141
27 C -0.042 4.042
28 H 0.123 0.877
29 H 0.124 0.876
30 H 0.125 0.875
31 H 0.153 0.847
32 H 0.180 0.820
33 H 0.232 0.768
34 H 0.056 0.944
35 H 0.111 0.889
36 H 0.085 0.915
37 H 0.091 0.909
38 H 0.068 0.932
39 H 0.013 0.987
40 H 0.006 0.994
41 H 0.070 0.930
42 H 0.086 0.914
43 H 0.091 0.909
44 H 0.100 0.900
45 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -3.683 27.536 -3.337 27.981
hybrid contribution -1.094 -1.348 0.989 1.998
sum -4.776 26.188 -2.348 26.724
Atomic orbital electron populations
1.22569 0.72887 1.06764 1.05855 1.46354 1.09804 1.04495 1.56534
1.21961 0.86656 0.87488 1.05443 1.16796 0.88201 0.86339 1.15763
1.21201 0.99874 0.91426 1.04457 1.21207 0.93839 0.99140 1.10049
1.22741 1.00873 0.82208 1.03800 1.42192 1.09712 1.08239 1.54424
0.73485 1.74305 1.17631 1.02624 1.19886 1.74571 1.17518 1.03599
1.23710 1.22628 0.86087 0.88446 1.02318 1.58766 1.34763 0.95296
1.28685 1.22308 0.99241 0.98178 0.86015 1.21438 0.97939 0.90966
1.02345 1.21137 0.97078 0.95548 0.95908 1.18974 0.94249 0.91432
0.95477 1.21617 1.39894 1.00121 0.95034 0.92033 1.25910 0.96269
0.97415 1.00227 1.70090 1.46353 1.10088 1.30941 0.85622 0.78844
0.77324 0.79983 1.18966 1.21293 1.19633 1.21641 1.01046 0.93454
0.97969 1.21953 0.89830 0.91503 1.00870 0.87696 0.87585 0.87530
0.84684 0.82005 0.76834 0.94357 0.88873 0.91504 0.90923 0.93193
0.98679 0.99449 0.93007 0.91428 0.90854 0.90043 0.93590
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.74 9.87 127.77 1.26 2.00 16
2 N -0.48 -11.05 3.24 -540.35 -1.75 -12.81 16
3 C 0.25 6.58 7.90 135.92 1.07 7.65 16
4 C 0.04 0.84 6.92 40.25 0.28 1.12 16
5 C -0.14 -2.78 10.80 22.38 0.24 -2.54 16
6 C -0.22 -2.81 10.83 22.06 0.24 -2.57 16
7 C 0.04 0.31 11.92 83.27 0.99 1.30 16
8 N -0.55 -6.11 5.70 -183.99 -1.05 -7.16 16
9 H 0.43 2.37 6.94 -92.71 -0.64 1.72 16
10 N -0.30 -10.21 12.23 -51.08 -0.62 -10.83 16
11 N -0.35 -12.22 11.42 -57.92 -0.66 -12.88 16
12 C 0.36 10.74 6.89 260.04 1.79 12.53 16
13 N -0.45 -12.96 4.63 -706.01 -3.27 -16.23 16
14 C 0.07 1.92 5.22 86.33 0.45 2.37 16
15 C -0.09 -2.98 5.15 30.65 0.16 -2.82 16
16 C -0.08 -3.04 2.20 -10.71 -0.02 -3.06 16
17 C 0.04 1.80 4.45 29.85 0.13 1.94 16
18 C -0.53 -28.76 8.45 25.60 0.22 -28.55 16
19 H 0.06 3.19 7.08 -2.91 -0.02 3.17 16
20 C 0.00 -0.04 5.46 84.65 0.46 0.42 16
21 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16
22 Si 0.96 43.43 29.54 68.60 2.03 45.45 16
23 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16
24 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16
25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
26 C -0.10 -3.44 5.38 30.65 0.16 -3.28 16
27 C 0.09 2.62 4.87 86.33 0.42 3.04 16
28 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16
29 H 0.11 1.34 6.29 -2.39 -0.02 1.32 16
30 H 0.11 0.75 6.91 -2.39 -0.02 0.73 16
31 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16
32 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16
33 H 0.22 -0.14 8.06 -2.91 -0.02 -0.16 16
34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.09 2.10 6.37 -2.38 -0.02 2.09 16
36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16
37 H 0.07 2.58 7.05 -2.39 -0.02 2.56 16
38 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16
39 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16
40 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16
41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16
42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16
43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
44 H 0.08 2.44 8.10 -2.38 -0.02 2.42 16
45 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16
Total: -1.00 -74.58 362.13 3.17 -71.40
By element:
Atomic # 1 Polarization: 8.88 SS G_CDS: 0.36 Total: 9.24 kcal
Atomic # 6 Polarization: -18.31 SS G_CDS: 7.86 Total: -10.45 kcal
Atomic # 7 Polarization: -108.58 SS G_CDS: -7.07 Total: -115.65 kcal
Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal
Total: -74.58 3.17 -71.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000573722781.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 178.179 kcal
(2) G-P(sol) polarization free energy of solvation -74.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.774 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds