Wall clock time and date at job start Tue Mar 31 2020 11:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37709 * 127.18365 * 2 1 4 4 C 1.47225 * 126.50146 * 359.97438 * 3 2 1 5 5 C 1.36528 * 126.09430 * 163.72146 * 4 3 2 6 6 C 1.40343 * 107.32809 * 180.02562 * 5 4 3 7 7 C 1.35105 * 107.74899 * 359.73889 * 6 5 4 8 8 N 1.36343 * 108.53763 * 0.42295 * 7 6 5 9 9 H 0.96999 * 125.71775 * 179.82416 * 8 7 6 10 10 N 1.31469 * 106.99134 * 180.26090 * 3 2 1 11 11 N 1.28498 * 109.93365 * 359.61613 * 10 3 2 12 12 C 1.31298 * 110.15255 * 0.39499 * 11 10 3 13 13 N 1.38488 * 126.35704 * 179.78212 * 12 11 10 14 14 C 1.46845 * 110.99939 * 106.26586 * 13 12 11 15 15 C 1.53039 * 109.52606 * 174.15982 * 14 13 12 16 16 C 1.53121 * 109.27487 * 59.17963 * 15 14 13 17 17 C 1.52992 * 109.52346 * 182.44055 * 16 15 14 18 18 C 1.50700 * 109.47456 * 294.68304 * 17 16 15 19 19 H 1.07996 * 119.99780 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00254 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00047 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47436 * 60.00178 * 22 20 18 24 24 H 1.48510 * 109.47193 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47028 * 300.00032 * 22 20 18 26 26 C 1.53124 * 109.16224 * 302.34659 * 16 15 14 27 27 C 1.46844 * 110.99918 * 342.06034 * 13 12 11 28 28 H 1.09005 * 109.46969 * 84.55485 * 1 2 3 29 29 H 1.09002 * 109.47118 * 204.54901 * 1 2 3 30 30 H 1.08995 * 109.47043 * 324.55264 * 1 2 3 31 31 H 1.08000 * 126.33305 * 0.03700 * 5 4 3 32 32 H 1.07996 * 126.12229 * 179.97438 * 6 5 4 33 33 H 1.08004 * 125.73323 * 180.25887 * 7 6 5 34 34 H 1.08998 * 109.46503 * 294.17809 * 14 13 12 35 35 H 1.09004 * 109.46121 * 54.14481 * 14 13 12 36 36 H 1.08997 * 109.50664 * 299.24351 * 15 14 13 37 37 H 1.08997 * 109.50479 * 179.12242 * 15 14 13 38 38 H 1.09005 * 109.52353 * 62.25342 * 16 15 14 39 39 H 1.09007 * 109.47349 * 54.68649 * 17 16 15 40 40 H 1.09004 * 109.47379 * 174.67974 * 17 16 15 41 41 H 0.97001 * 120.00217 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.50113 * 297.71841 * 26 16 15 43 43 H 1.08995 * 109.50213 * 177.58933 * 26 16 15 44 44 H 1.09004 * 109.45917 * 305.84763 * 27 13 12 45 45 H 1.09000 * 109.46816 * 65.81810 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2973 1.0971 0.0000 4 6 1.8837 2.5101 -0.0005 5 6 2.6740 3.5796 0.3087 6 6 1.8847 4.7331 0.1821 7 6 0.6485 4.3461 -0.2022 8 7 0.6342 2.9872 -0.3116 9 1 -0.1296 2.4479 -0.5698 10 7 3.5312 0.6433 -0.0057 11 7 3.5254 -0.6416 -0.0011 12 6 2.2908 -1.0884 -0.0007 13 7 1.8983 -2.4165 -0.0006 14 6 1.3814 -2.8124 1.3156 15 6 0.8246 -4.2359 1.2395 16 6 1.9373 -5.1910 0.7990 17 6 1.3721 -6.6061 0.6622 18 6 0.9393 -7.1073 2.0159 19 1 1.0553 -6.4791 2.8867 20 6 0.3941 -8.3673 2.1426 21 7 0.2514 -9.1317 1.0820 22 14 -0.1430 -8.9882 3.8205 23 1 -1.1886 -8.0881 4.3700 24 1 -0.6916 -10.3618 3.6877 25 1 1.0246 -9.0086 4.7378 26 6 2.4914 -4.7285 -0.5515 27 6 2.9999 -3.2908 -0.4233 28 1 -0.3633 0.0975 -1.0231 29 1 -0.3633 -0.9348 0.4270 30 1 -0.3633 0.8371 0.5960 31 1 3.7142 3.5444 0.5971 32 1 2.2085 5.7484 0.3566 33 1 -0.1885 5.0028 -0.3886 34 1 2.1876 -2.7765 2.0483 35 1 0.5880 -2.1276 1.6151 36 1 0.0091 -4.2695 0.5171 37 1 0.4552 -4.5351 2.2203 38 1 2.7358 -5.1869 1.5411 39 1 0.5148 -6.5915 -0.0110 40 1 2.1396 -7.2666 0.2586 41 1 -0.1318 -10.0184 1.1712 42 1 1.7021 -4.7698 -1.3020 43 1 3.3129 -5.3797 -0.8500 44 1 3.3819 -2.9535 -1.3868 45 1 3.7986 -3.2527 0.3175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573722781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:14 Heat of formation + Delta-G solvation = 106.774343 kcal Electronic energy + Delta-G solvation = -25924.386169 eV Core-core repulsion = 22363.993513 eV Total energy + Delta-G solvation = -3560.392656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.06300 -41.86326 -40.23826 -36.49637 -36.01910 -34.34454 -32.19586 -31.98323 -31.88081 -30.01212 -28.54604 -28.40594 -26.04882 -24.50799 -23.57859 -23.18031 -22.12196 -21.68114 -20.96011 -20.44417 -19.29561 -18.39519 -18.14377 -17.57946 -17.16295 -16.53657 -15.97805 -15.64767 -15.29242 -15.16309 -15.06879 -14.75802 -14.67160 -14.48276 -14.24800 -13.97313 -13.61734 -13.47714 -13.32902 -13.15056 -13.05234 -12.85676 -12.70482 -12.54919 -12.29740 -12.16292 -11.89729 -11.67250 -11.38068 -11.30940 -11.07383 -10.98015 -10.78004 -10.50336 -9.92646 -9.79478 -8.77493 -8.15515 -6.24615 0.14600 0.97991 1.20919 1.41214 1.43249 1.50717 1.78785 2.03557 2.21960 2.42909 2.55915 3.18002 3.30979 3.49468 3.67185 3.84332 3.91104 4.04832 4.11488 4.15058 4.27303 4.30466 4.36751 4.42726 4.46297 4.54965 4.61269 4.65636 4.72899 4.75639 4.85167 4.94419 5.07622 5.20979 5.30132 5.31673 5.33606 5.40197 5.45363 5.56876 5.64005 5.82173 5.86890 5.90915 5.97080 6.09066 6.30796 6.55258 6.91546 7.43686 7.54526 8.95920 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.002507 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.108913 B =11165.227540 C =11618.793330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.477 5.477 3 C 0.250 3.750 4 C 0.042 3.958 5 C -0.141 4.141 6 C -0.219 4.219 7 C 0.038 3.962 8 N -0.547 5.547 9 H 0.425 0.575 10 N -0.304 5.304 11 N -0.349 5.349 12 C 0.362 3.638 13 N -0.450 5.450 14 C 0.069 3.931 15 C -0.089 4.089 16 C -0.078 4.078 17 C 0.036 3.964 18 C -0.529 4.529 19 H 0.062 0.938 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.957 3.043 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.271 1.271 26 C -0.103 4.103 27 C 0.085 3.915 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.162 0.838 33 H 0.215 0.785 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.050 0.950 39 H -0.005 1.005 40 H -0.013 1.013 41 H 0.261 0.739 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 27.958 -2.905 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.172 5.172 3 C -0.015 4.015 4 C -0.071 4.071 5 C -0.170 4.170 6 C -0.242 4.242 7 C -0.096 4.096 8 N -0.146 5.146 9 H 0.265 0.735 10 N -0.144 5.144 11 N -0.194 5.194 12 C 0.005 3.995 13 N -0.175 5.175 14 C -0.057 4.057 15 C -0.127 4.127 16 C -0.097 4.097 17 C -0.001 4.001 18 C -0.567 4.567 19 H 0.080 0.920 20 C -0.198 4.198 21 N -0.575 5.575 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.196 1.196 26 C -0.141 4.141 27 C -0.042 4.042 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.153 0.847 32 H 0.180 0.820 33 H 0.232 0.768 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.013 0.987 40 H 0.006 0.994 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.683 27.536 -3.337 27.981 hybrid contribution -1.094 -1.348 0.989 1.998 sum -4.776 26.188 -2.348 26.724 Atomic orbital electron populations 1.22569 0.72887 1.06764 1.05855 1.46354 1.09804 1.04495 1.56534 1.21961 0.86656 0.87488 1.05443 1.16796 0.88201 0.86339 1.15763 1.21201 0.99874 0.91426 1.04457 1.21207 0.93839 0.99140 1.10049 1.22741 1.00873 0.82208 1.03800 1.42192 1.09712 1.08239 1.54424 0.73485 1.74305 1.17631 1.02624 1.19886 1.74571 1.17518 1.03599 1.23710 1.22628 0.86087 0.88446 1.02318 1.58766 1.34763 0.95296 1.28685 1.22308 0.99241 0.98178 0.86015 1.21438 0.97939 0.90966 1.02345 1.21137 0.97078 0.95548 0.95908 1.18974 0.94249 0.91432 0.95477 1.21617 1.39894 1.00121 0.95034 0.92033 1.25910 0.96269 0.97415 1.00227 1.70090 1.46353 1.10088 1.30941 0.85622 0.78844 0.77324 0.79983 1.18966 1.21293 1.19633 1.21641 1.01046 0.93454 0.97969 1.21953 0.89830 0.91503 1.00870 0.87696 0.87585 0.87530 0.84684 0.82005 0.76834 0.94357 0.88873 0.91504 0.90923 0.93193 0.98679 0.99449 0.93007 0.91428 0.90854 0.90043 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 9.87 127.77 1.26 2.00 16 2 N -0.48 -11.05 3.24 -540.35 -1.75 -12.81 16 3 C 0.25 6.58 7.90 135.92 1.07 7.65 16 4 C 0.04 0.84 6.92 40.25 0.28 1.12 16 5 C -0.14 -2.78 10.80 22.38 0.24 -2.54 16 6 C -0.22 -2.81 10.83 22.06 0.24 -2.57 16 7 C 0.04 0.31 11.92 83.27 0.99 1.30 16 8 N -0.55 -6.11 5.70 -183.99 -1.05 -7.16 16 9 H 0.43 2.37 6.94 -92.71 -0.64 1.72 16 10 N -0.30 -10.21 12.23 -51.08 -0.62 -10.83 16 11 N -0.35 -12.22 11.42 -57.92 -0.66 -12.88 16 12 C 0.36 10.74 6.89 260.04 1.79 12.53 16 13 N -0.45 -12.96 4.63 -706.01 -3.27 -16.23 16 14 C 0.07 1.92 5.22 86.33 0.45 2.37 16 15 C -0.09 -2.98 5.15 30.65 0.16 -2.82 16 16 C -0.08 -3.04 2.20 -10.71 -0.02 -3.06 16 17 C 0.04 1.80 4.45 29.85 0.13 1.94 16 18 C -0.53 -28.76 8.45 25.60 0.22 -28.55 16 19 H 0.06 3.19 7.08 -2.91 -0.02 3.17 16 20 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 21 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 22 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.10 -3.44 5.38 30.65 0.16 -3.28 16 27 C 0.09 2.62 4.87 86.33 0.42 3.04 16 28 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.11 1.34 6.29 -2.39 -0.02 1.32 16 30 H 0.11 0.75 6.91 -2.39 -0.02 0.73 16 31 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.22 -0.14 8.06 -2.91 -0.02 -0.16 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 2.10 6.37 -2.38 -0.02 2.09 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.58 7.05 -2.39 -0.02 2.56 16 38 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 39 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 40 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.08 2.44 8.10 -2.38 -0.02 2.42 16 45 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -74.58 362.13 3.17 -71.40 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.36 Total: 9.24 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 7.86 Total: -10.45 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -7.07 Total: -115.65 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.58 3.17 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573722781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.179 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds