Wall clock time and date at job start Tue Mar 31 2020 12:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.27407 * 57.91476 * 9 7 2 11 11 C 1.54595 * 110.30901 * 295.71336 * 9 7 2 12 12 C 1.54934 * 102.92030 * 219.12903 * 11 9 7 13 13 N 1.48527 * 103.22902 * 37.41483 * 12 11 9 14 14 C 1.46897 * 111.00267 * 200.28047 * 13 12 11 15 15 C 1.50707 * 109.46991 * 287.39621 * 14 13 12 16 16 C 1.38236 * 120.00090 * 269.72569 * 15 14 13 17 17 C 1.38231 * 119.99947 * 179.81265 * 16 15 14 18 18 C 1.38232 * 120.00324 * 0.39271 * 17 16 15 19 19 C 1.50699 * 120.00531 * 179.83857 * 18 17 16 20 20 C 1.54259 * 110.03103 * 57.18857 * 19 18 17 21 21 C 1.54890 * 104.19802 * 217.10713 * 20 19 18 22 22 C 1.54891 * 102.74584 * 37.94352 * 21 20 19 23 23 C 1.53878 * 110.02826 * 300.02226 * 19 18 17 24 24 C 1.38240 * 119.99574 * 359.86211 * 18 17 16 25 25 C 1.38232 * 120.00275 * 359.95026 * 24 18 17 26 26 C 1.47903 * 105.82227 * 320.79082 * 13 12 11 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 0.96706 * 113.99767 * 300.69486 * 10 9 7 29 29 H 1.08999 * 110.72485 * 337.48919 * 11 9 7 30 30 H 1.09002 * 110.71994 * 100.77471 * 11 9 7 31 31 H 1.09007 * 110.66701 * 278.97858 * 12 11 9 32 32 H 1.08997 * 110.81029 * 155.91893 * 12 11 9 33 33 H 1.08996 * 109.47631 * 47.39320 * 14 13 12 34 34 H 1.09005 * 109.47551 * 167.39697 * 14 13 12 35 35 H 1.08002 * 119.99614 * 359.97438 * 16 15 14 36 36 H 1.08005 * 120.00019 * 180.23713 * 17 16 15 37 37 H 1.09002 * 110.01618 * 178.63487 * 19 18 17 38 38 H 1.09005 * 110.49009 * 335.78767 * 20 19 18 39 39 H 1.09002 * 110.49061 * 98.43170 * 20 19 18 40 40 H 1.08993 * 110.75822 * 279.63146 * 21 20 19 41 41 H 1.09001 * 110.92117 * 156.33002 * 21 20 19 42 42 H 1.09005 * 110.48383 * 203.38280 * 22 21 20 43 43 H 1.08999 * 110.60163 * 80.79514 * 22 21 20 44 44 H 1.08998 * 110.03391 * 238.56411 * 23 19 18 45 45 H 1.08993 * 110.03551 * 0.02562 * 23 19 18 46 46 H 1.08003 * 119.99999 * 179.97438 * 24 18 17 47 47 H 1.08000 * 120.00122 * 179.97438 * 25 24 18 48 48 H 1.08994 * 109.92113 * 265.97529 * 26 13 12 49 49 H 1.09002 * 109.91468 * 144.68001 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 8 0.3872 -2.5712 -1.1378 11 6 0.4374 -2.6501 1.3042 12 6 0.6021 -4.1530 1.6431 13 7 2.0055 -4.4384 1.2493 14 6 2.2115 -5.8780 1.0414 15 6 2.2128 -6.5828 2.3735 16 6 3.3981 -6.7534 3.0640 17 6 3.3986 -7.3965 4.2876 18 6 2.2152 -7.8761 4.8170 19 6 2.2163 -8.5803 6.1493 20 6 2.8137 -7.6596 7.2332 21 6 3.6182 -8.6187 8.1453 22 6 4.2300 -9.6194 7.1337 23 6 3.1167 -9.8265 6.0859 24 6 1.0306 -7.7100 4.1240 25 6 1.0295 -7.0636 2.9021 26 6 2.2345 -3.6842 -0.0022 27 1 -0.4849 0.8400 0.0004 28 1 -0.2684 -1.8614 -1.1790 29 1 0.8576 -2.0282 2.0945 30 1 -0.6113 -2.4054 1.1356 31 1 -0.0920 -4.7574 1.0589 32 1 0.4587 -4.3274 2.7094 33 1 1.4074 -6.2744 0.4214 34 1 3.1677 -6.0401 0.5436 35 1 4.3233 -6.3820 2.6486 36 1 4.3242 -7.5265 4.8290 37 1 1.2003 -8.8672 6.4205 38 1 3.4738 -6.9183 6.7827 39 1 2.0201 -7.1713 7.7989 40 1 2.9578 -9.1315 8.8445 41 1 4.4020 -8.0818 8.6796 42 1 4.4699 -10.5616 7.6266 43 1 5.1196 -9.1970 6.6666 44 1 2.5380 -10.7180 6.3274 45 1 3.5533 -9.9216 5.0918 46 1 0.1060 -8.0851 4.5373 47 1 0.1041 -6.9342 2.3605 48 1 2.0430 -4.3253 -0.8626 49 1 3.2599 -3.3157 -0.0312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592155132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:54 Heat of formation + Delta-G solvation = -41.577541 kcal Electronic energy + Delta-G solvation = -26231.892796 eV Core-core repulsion = 22736.314711 eV Total energy + Delta-G solvation = -3495.578085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.95186 -38.49890 -37.40908 -34.85852 -32.32795 -32.04680 -30.79403 -29.84760 -28.89187 -28.11006 -27.54371 -25.03202 -23.77961 -22.67578 -21.44979 -20.82673 -20.14468 -19.59546 -19.35438 -17.08221 -16.66582 -15.92637 -15.42108 -15.22393 -14.93217 -14.82324 -14.44289 -14.12289 -13.90670 -13.60463 -13.35891 -13.28240 -13.05880 -12.79475 -12.30686 -12.07095 -11.91018 -11.54695 -11.43157 -11.34587 -11.28339 -11.25456 -11.15975 -11.01542 -10.85200 -10.82080 -10.64652 -10.52598 -10.49196 -10.39434 -10.24121 -9.90015 -9.14334 -8.75108 -8.56893 -8.40172 -8.05931 -7.74090 -6.17285 -4.22800 1.46357 1.56903 3.24681 3.33077 3.38023 3.81645 4.34793 4.37814 4.45944 4.49877 4.77253 4.93131 5.01120 5.10256 5.11974 5.13841 5.22733 5.31654 5.35896 5.41230 5.44507 5.55798 5.61008 5.68008 5.69755 5.75038 5.78361 5.84969 5.89778 6.00777 6.05957 6.06917 6.13925 6.15879 6.20039 6.25158 6.27859 6.44174 6.51790 6.60380 6.72283 6.84119 6.95723 7.09254 7.15691 7.32620 7.54497 7.68859 7.73749 7.87988 8.19550 8.78850 9.43930 9.55199 10.90635 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.002619 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.622118 B =10689.656075 C =11166.483693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.595 6.595 11 C -0.118 4.118 12 C 0.034 3.966 13 N -0.507 5.507 14 C 0.081 3.919 15 C -0.066 4.066 16 C -0.098 4.098 17 C -0.117 4.117 18 C -0.082 4.082 19 C -0.051 4.051 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.110 4.110 26 C 0.053 3.947 27 H 0.266 0.734 28 H 0.383 0.617 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.036 0.964 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -18.019 12.322 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.203 3.797 10 O -0.405 6.405 11 C -0.157 4.157 12 C -0.093 4.093 13 N -0.232 5.232 14 C -0.047 4.047 15 C -0.066 4.066 16 C -0.117 4.117 17 C -0.135 4.135 18 C -0.082 4.082 19 C -0.070 4.070 20 C -0.156 4.156 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.138 4.138 25 C -0.128 4.128 26 C -0.074 4.074 27 H 0.076 0.924 28 H 0.235 0.765 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.054 0.946 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.666 -18.268 12.573 22.662 hybrid contribution -0.577 1.220 -0.475 1.430 sum 4.090 -17.048 12.098 21.301 Atomic orbital electron populations 1.69631 1.05949 1.27244 1.51274 1.25017 0.95000 0.99468 0.93957 0.86408 0.80180 0.83069 0.77561 1.19661 1.20942 1.20940 1.21737 0.93553 0.90601 1.50484 0.91938 1.19355 0.86265 0.91559 0.82526 1.86084 1.50972 1.55251 1.48204 1.22982 1.00693 0.91600 1.00424 1.23307 0.88131 0.98765 0.99134 1.64829 1.23611 1.04553 1.30158 1.21222 1.01292 0.89510 0.92654 1.19803 0.93175 0.96950 0.96690 1.20995 0.97911 0.98088 0.94690 1.20876 0.97474 0.99265 0.95857 1.19756 0.93397 0.99262 0.95827 1.20751 0.99811 0.94469 0.91943 1.22510 0.99456 0.97595 0.96001 1.22509 0.99224 0.97166 0.97445 1.22379 0.98163 0.99136 0.96585 1.22254 0.96549 0.97011 0.99669 1.20955 0.97294 1.00318 0.95247 1.21037 0.97645 0.98222 0.95907 1.22873 1.00581 0.95016 0.88900 0.92448 0.76541 0.91453 0.91786 0.95041 0.91772 0.94239 0.90538 0.86127 0.86504 0.90612 0.90933 0.91611 0.91656 0.91620 0.91900 0.91637 0.91892 0.91357 0.86611 0.86503 0.94608 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 10.89 55.43 0.60 -23.74 16 2 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.31 8.10 -34.44 -0.28 -14.58 16 8 H 0.06 1.70 7.34 -52.49 -0.39 1.32 16 9 C 0.24 6.13 0.99 -90.41 -0.09 6.04 16 10 O -0.60 -15.75 12.92 -35.23 -0.46 -16.20 16 11 C -0.12 -2.80 5.49 -24.87 -0.14 -2.94 16 12 C 0.03 0.69 5.68 -1.90 -0.01 0.68 16 13 N -0.51 -10.00 5.23 -231.89 -1.21 -11.21 16 14 C 0.08 1.32 4.86 -4.97 -0.02 1.30 16 15 C -0.07 -0.97 5.16 -104.62 -0.54 -1.51 16 16 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 17 C -0.12 -1.40 8.13 -39.59 -0.32 -1.72 16 18 C -0.08 -0.95 4.69 -104.62 -0.49 -1.44 16 19 C -0.05 -0.47 3.13 -90.66 -0.28 -0.76 16 20 C -0.12 -1.04 6.26 -25.08 -0.16 -1.20 16 21 C -0.13 -0.92 6.91 -24.74 -0.17 -1.10 16 22 C -0.13 -0.91 6.83 -25.07 -0.17 -1.08 16 23 C -0.12 -0.96 6.25 -25.61 -0.16 -1.12 16 24 C -0.12 -1.47 9.68 -39.58 -0.38 -1.86 16 25 C -0.11 -1.51 8.83 -39.58 -0.35 -1.86 16 26 C 0.05 1.19 6.13 -2.75 -0.02 1.17 16 27 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.38 10.29 7.08 45.56 0.32 10.61 16 29 H 0.07 1.70 7.86 -51.93 -0.41 1.29 16 30 H 0.06 1.57 8.06 -51.93 -0.42 1.15 16 31 H 0.03 0.62 7.81 -51.92 -0.41 0.21 16 32 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 33 H 0.04 0.64 7.77 -51.93 -0.40 0.24 16 34 H 0.08 1.16 8.02 -51.93 -0.42 0.74 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.12 1.21 7.73 -52.48 -0.41 0.81 16 37 H 0.08 0.67 7.91 -51.93 -0.41 0.25 16 38 H 0.07 0.71 6.86 -51.93 -0.36 0.35 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.61 7.30 -51.93 -0.38 0.23 16 46 H 0.12 1.20 7.96 -52.48 -0.42 0.78 16 47 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 48 H 0.04 0.78 7.59 -51.93 -0.39 0.38 16 49 H 0.08 1.76 7.39 -51.93 -0.38 1.37 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -27.92 379.80 -12.21 -40.13 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.79 Total: 11.32 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -4.06 Total: -22.00 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.61 Total: -34.95 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.46 Total: -16.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -27.92 -12.21 -40.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.447 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds