Wall clock time and date at job start Tue Mar 31 2020 12:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.27407 * 57.91476 * 9 7 2 11 11 C 1.54595 * 110.30901 * 295.71336 * 9 7 2 12 12 C 1.54934 * 102.92030 * 219.12903 * 11 9 7 13 13 N 1.48527 * 103.22902 * 37.41483 * 12 11 9 14 14 C 1.46897 * 111.00267 * 200.28047 * 13 12 11 15 15 C 1.50707 * 109.46991 * 287.39621 * 14 13 12 16 16 C 1.38236 * 120.00090 * 269.72569 * 15 14 13 17 17 C 1.38231 * 119.99947 * 179.81265 * 16 15 14 18 18 C 1.38232 * 120.00324 * 0.39271 * 17 16 15 19 19 C 1.50699 * 120.00531 * 179.83857 * 18 17 16 20 20 C 1.54259 * 110.03103 * 57.18857 * 19 18 17 21 21 C 1.54890 * 104.19802 * 217.10713 * 20 19 18 22 22 C 1.54891 * 102.74584 * 37.94352 * 21 20 19 23 23 C 1.53878 * 110.02826 * 300.02226 * 19 18 17 24 24 C 1.38240 * 119.99574 * 359.86211 * 18 17 16 25 25 C 1.38232 * 120.00275 * 359.95026 * 24 18 17 26 26 C 1.47903 * 105.82227 * 320.79082 * 13 12 11 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 0.96706 * 113.99767 * 300.69486 * 10 9 7 29 29 H 1.08999 * 110.72485 * 337.48919 * 11 9 7 30 30 H 1.09002 * 110.71994 * 100.77471 * 11 9 7 31 31 H 1.09007 * 110.66701 * 278.97858 * 12 11 9 32 32 H 1.08997 * 110.81029 * 155.91893 * 12 11 9 33 33 H 1.08996 * 109.47631 * 47.39320 * 14 13 12 34 34 H 1.09005 * 109.47551 * 167.39697 * 14 13 12 35 35 H 1.08002 * 119.99614 * 359.97438 * 16 15 14 36 36 H 1.08005 * 120.00019 * 180.23713 * 17 16 15 37 37 H 1.09002 * 110.01618 * 178.63487 * 19 18 17 38 38 H 1.09005 * 110.49009 * 335.78767 * 20 19 18 39 39 H 1.09002 * 110.49061 * 98.43170 * 20 19 18 40 40 H 1.08993 * 110.75822 * 279.63146 * 21 20 19 41 41 H 1.09001 * 110.92117 * 156.33002 * 21 20 19 42 42 H 1.09005 * 110.48383 * 203.38280 * 22 21 20 43 43 H 1.08999 * 110.60163 * 80.79514 * 22 21 20 44 44 H 1.08998 * 110.03391 * 238.56411 * 23 19 18 45 45 H 1.08993 * 110.03551 * 0.02562 * 23 19 18 46 46 H 1.08003 * 119.99999 * 179.97438 * 24 18 17 47 47 H 1.08000 * 120.00122 * 179.97438 * 25 24 18 48 48 H 1.08994 * 109.92113 * 265.97529 * 26 13 12 49 49 H 1.09002 * 109.91468 * 144.68001 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 8 0.3872 -2.5712 -1.1378 11 6 0.4374 -2.6501 1.3042 12 6 0.6021 -4.1530 1.6431 13 7 2.0055 -4.4384 1.2493 14 6 2.2115 -5.8780 1.0414 15 6 2.2128 -6.5828 2.3735 16 6 3.3981 -6.7534 3.0640 17 6 3.3986 -7.3965 4.2876 18 6 2.2152 -7.8761 4.8170 19 6 2.2163 -8.5803 6.1493 20 6 2.8137 -7.6596 7.2332 21 6 3.6182 -8.6187 8.1453 22 6 4.2300 -9.6194 7.1337 23 6 3.1167 -9.8265 6.0859 24 6 1.0306 -7.7100 4.1240 25 6 1.0295 -7.0636 2.9021 26 6 2.2345 -3.6842 -0.0022 27 1 -0.4849 0.8400 0.0004 28 1 -0.2684 -1.8614 -1.1790 29 1 0.8576 -2.0282 2.0945 30 1 -0.6113 -2.4054 1.1356 31 1 -0.0920 -4.7574 1.0589 32 1 0.4587 -4.3274 2.7094 33 1 1.4074 -6.2744 0.4214 34 1 3.1677 -6.0401 0.5436 35 1 4.3233 -6.3820 2.6486 36 1 4.3242 -7.5265 4.8290 37 1 1.2003 -8.8672 6.4205 38 1 3.4738 -6.9183 6.7827 39 1 2.0201 -7.1713 7.7989 40 1 2.9578 -9.1315 8.8445 41 1 4.4020 -8.0818 8.6796 42 1 4.4699 -10.5616 7.6266 43 1 5.1196 -9.1970 6.6666 44 1 2.5380 -10.7180 6.3274 45 1 3.5533 -9.9216 5.0918 46 1 0.1060 -8.0851 4.5373 47 1 0.1041 -6.9342 2.3605 48 1 2.0430 -4.3253 -0.8626 49 1 3.2599 -3.3157 -0.0312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592155132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:53 Heat of formation + Delta-G solvation = -56.448072 kcal Electronic energy + Delta-G solvation = -26232.537630 eV Core-core repulsion = 22736.314711 eV Total energy + Delta-G solvation = -3496.222919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.94133 -40.00735 -38.40885 -36.58980 -34.13477 -33.52534 -31.78265 -31.24095 -29.85913 -29.51443 -28.78096 -26.64397 -25.29318 -23.67822 -22.63507 -21.63891 -21.41636 -21.26491 -20.39115 -19.12457 -17.57851 -17.05094 -16.90679 -16.62128 -16.45573 -15.89008 -15.79687 -15.57732 -15.28025 -14.81848 -14.39629 -14.26615 -14.20799 -14.05114 -13.84521 -13.54383 -13.39101 -13.18538 -13.06971 -12.68297 -12.54257 -12.38018 -12.27012 -12.17630 -12.03914 -11.93823 -11.91371 -11.87815 -11.84503 -11.51650 -11.38762 -11.29825 -11.08899 -10.61507 -10.11948 -9.74173 -9.49388 -9.23082 -8.21937 -6.35117 0.44907 0.57511 1.39173 1.42110 1.53272 2.39177 2.75434 3.02885 3.31227 3.67055 3.75295 3.86957 3.87246 3.93096 4.00803 4.18638 4.23185 4.30983 4.32429 4.38938 4.47808 4.55637 4.59453 4.62326 4.66924 4.72363 4.73881 4.75343 4.79668 4.87877 4.91573 5.03994 5.07691 5.12096 5.13644 5.22353 5.23974 5.31102 5.36350 5.39429 5.43179 5.51915 5.58011 5.60617 5.75843 5.78477 5.79932 5.98510 6.12758 6.17145 6.22280 6.69231 7.34542 7.44055 8.84576 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.002619 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.622118 B =10689.656075 C =11166.483693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.227 3.773 10 O -0.602 6.602 11 C -0.111 4.111 12 C 0.050 3.950 13 N -0.510 5.510 14 C 0.085 3.915 15 C -0.085 4.085 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.078 4.078 19 C -0.051 4.051 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.119 4.119 26 C 0.061 3.939 27 H 0.269 0.731 28 H 0.378 0.622 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.135 0.865 47 H 0.118 0.882 48 H 0.037 0.963 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -19.240 13.896 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.072 0.928 9 C 0.187 3.813 10 O -0.411 6.411 11 C -0.150 4.150 12 C -0.078 4.078 13 N -0.235 5.235 14 C -0.043 4.043 15 C -0.086 4.086 16 C -0.127 4.127 17 C -0.135 4.135 18 C -0.078 4.078 19 C -0.070 4.070 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.066 4.066 27 H 0.078 0.922 28 H 0.228 0.772 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.153 0.847 47 H 0.136 0.864 48 H 0.055 0.945 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.258 -19.508 14.150 24.666 hybrid contribution -0.769 1.556 -0.927 1.967 sum 4.490 -17.952 13.223 22.744 Atomic orbital electron populations 1.69707 1.06823 1.28065 1.51040 1.25714 0.95876 1.02341 0.93488 0.85466 0.78928 0.79283 0.77670 1.19564 1.20404 1.20452 1.21975 0.93415 0.92068 1.51496 0.92769 1.19609 0.86750 0.92295 0.82631 1.86077 1.51021 1.54958 1.49064 1.22767 0.99225 0.93884 0.99102 1.23139 0.88641 0.96051 0.99971 1.64804 1.23131 1.06789 1.28746 1.21243 1.01762 0.87223 0.94069 1.19706 0.94138 0.98346 0.96389 1.21133 0.97737 0.98482 0.95334 1.21068 0.98464 0.98663 0.95340 1.20068 0.92933 0.98269 0.96537 1.20815 1.00676 0.94791 0.90670 1.22508 0.99474 0.97620 0.96144 1.22500 0.99285 0.96844 0.97326 1.22384 0.97731 0.99700 0.96323 1.22236 0.96707 0.96779 0.99553 1.21217 0.98466 0.99899 0.94740 1.21141 0.97357 0.98662 0.96638 1.22702 0.99425 0.94326 0.90186 0.92173 0.77179 0.93605 0.93250 0.94453 0.90450 0.94180 0.89590 0.85791 0.84957 0.89828 0.92086 0.91573 0.90814 0.91129 0.90725 0.91807 0.90903 0.92205 0.84693 0.86444 0.94507 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.02 10.89 21.45 0.23 -49.79 16 2 C 0.03 1.38 5.27 84.66 0.45 1.82 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -30.51 8.10 25.60 0.21 -30.30 16 8 H 0.05 3.01 7.34 -2.91 -0.02 2.98 16 9 C 0.23 11.65 0.99 -10.66 -0.01 11.64 16 10 O -0.60 -32.43 12.92 -148.98 -1.93 -34.36 16 11 C -0.11 -5.35 5.49 31.80 0.17 -5.18 16 12 C 0.05 1.98 5.68 86.65 0.49 2.47 16 13 N -0.51 -19.96 5.23 -887.57 -4.65 -24.60 16 14 C 0.08 2.69 4.86 85.56 0.42 3.11 16 15 C -0.09 -2.44 5.16 -19.86 -0.10 -2.54 16 16 C -0.11 -2.83 9.70 22.27 0.22 -2.62 16 17 C -0.12 -2.64 8.13 22.27 0.18 -2.46 16 18 C -0.08 -1.65 4.69 -19.87 -0.09 -1.74 16 19 C -0.05 -0.83 3.13 -10.82 -0.03 -0.86 16 20 C -0.12 -1.87 6.26 31.67 0.20 -1.68 16 21 C -0.12 -1.49 6.91 31.89 0.22 -1.27 16 22 C -0.12 -1.49 6.83 31.67 0.22 -1.27 16 23 C -0.12 -1.60 6.25 31.32 0.20 -1.40 16 24 C -0.13 -2.85 9.68 22.27 0.22 -2.63 16 25 C -0.12 -3.15 8.83 22.27 0.20 -2.96 16 26 C 0.06 2.74 6.13 86.45 0.53 3.27 16 27 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.38 20.80 7.08 -74.05 -0.52 20.27 16 29 H 0.05 2.36 7.86 -2.39 -0.02 2.34 16 30 H 0.05 2.47 8.06 -2.39 -0.02 2.45 16 31 H 0.04 1.45 7.81 -2.38 -0.02 1.43 16 32 H 0.08 2.88 7.84 -2.39 -0.02 2.87 16 33 H 0.04 1.27 7.77 -2.39 -0.02 1.25 16 34 H 0.09 2.54 8.02 -2.38 -0.02 2.52 16 35 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.13 2.50 7.73 -2.91 -0.02 2.48 16 37 H 0.08 1.24 7.91 -2.39 -0.02 1.22 16 38 H 0.06 1.09 6.86 -2.38 -0.02 1.08 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.94 7.30 -2.39 -0.02 0.92 16 46 H 0.14 2.48 7.96 -2.91 -0.02 2.45 16 47 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 48 H 0.04 1.61 7.59 -2.39 -0.02 1.59 16 49 H 0.07 3.35 7.39 -2.39 -0.02 3.34 16 Total: -1.00 -59.03 379.80 -0.25 -59.28 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: 0.39 Total: 38.85 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 3.67 Total: -34.60 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -4.41 Total: -74.39 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.93 Total: -34.36 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -59.03 -0.25 -59.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.836 kcal (2) G-P(sol) polarization free energy of solvation -59.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds