Wall clock time and date at job start Tue Mar 31 2020 12:34:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99822 * 2 1
4 4 H 1.48502 * 109.47059 * 239.99717 * 3 2 1
5 5 H 1.48500 * 109.47476 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.46884 * 120.00497 * 3 2 1
7 7 C 1.37875 * 119.99756 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99832 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00182 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47221 * 179.97438 * 9 7 2
11 11 O 1.42893 * 109.47230 * 179.97438 * 10 9 7
12 12 C 1.35904 * 117.00216 * 179.97438 * 11 10 9
13 13 C 1.38751 * 120.05412 * 0.02562 * 12 11 10
14 14 C 1.38121 * 119.94641 * 180.02562 * 13 12 11
15 15 C 1.38291 * 120.05218 * 0.02562 * 14 13 12
16 16 C 1.38241 * 120.11180 * 0.25948 * 15 14 13
17 17 C 1.50696 * 119.97243 * 179.70308 * 16 15 14
18 18 N 1.46898 * 109.47368 * 89.99261 * 17 16 15
19 19 C 1.46902 * 111.00040 * 180.02562 * 18 17 16
20 20 C 1.52998 * 115.55194 * 179.91271 * 19 18 17
21 21 C 1.53784 * 113.61335 * 63.08191 * 20 19 18
22 22 C 1.53781 * 87.08131 * 220.01992 * 21 20 19
23 23 C 1.53784 * 113.61229 * 325.58532 * 20 19 18
24 24 C 1.53005 * 117.49848 * 34.20830 * 19 18 17
25 25 C 1.52998 * 117.49874 * 325.58615 * 19 18 17
26 26 C 1.38173 * 120.05599 * 359.44059 * 16 15 14
27 27 H 0.97004 * 119.99409 * 359.97438 * 1 2 3
28 28 H 1.08998 * 109.46932 * 59.99471 * 9 7 2
29 29 H 1.08994 * 109.46712 * 299.99734 * 9 7 2
30 30 H 1.09001 * 109.46914 * 59.99436 * 10 9 7
31 31 H 1.09007 * 109.47065 * 299.99829 * 10 9 7
32 32 H 1.08007 * 120.02525 * 0.04297 * 13 12 11
33 33 H 1.07998 * 119.97579 * 180.02562 * 14 13 12
34 34 H 1.08002 * 119.93997 * 179.97438 * 15 14 13
35 35 H 1.09003 * 109.47405 * 209.99619 * 17 16 15
36 36 H 1.09005 * 109.46844 * 329.99294 * 17 16 15
37 37 H 1.00895 * 111.00128 * 56.05293 * 18 17 16
38 38 H 1.08998 * 112.85401 * 194.38992 * 20 19 18
39 39 H 1.09002 * 113.61392 * 334.56882 * 21 20 19
40 40 H 1.08997 * 113.61281 * 105.46963 * 21 20 19
41 41 H 1.08996 * 113.61209 * 270.88220 * 22 21 20
42 42 H 1.08999 * 113.61392 * 139.97855 * 22 21 20
43 43 H 1.08995 * 113.61524 * 254.52056 * 23 20 19
44 44 H 1.08993 * 113.61411 * 25.43183 * 23 20 19
45 45 H 1.08994 * 117.49490 * 359.97438 * 24 19 18
46 46 H 1.09003 * 117.49772 * 145.02140 * 24 19 18
47 47 H 1.09008 * 117.49667 * 214.97647 * 25 19 18
48 48 H 1.08991 * 117.50097 * 359.97438 * 25 19 18
49 49 H 1.08001 * 120.02637 * 180.25972 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1030 1.6964 -1.2125
5 1 1.2842 2.7465 0.0006
6 1 3.1030 1.6963 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 8 1.5307 -4.8996 0.0011
12 6 2.2708 -6.0394 0.0007
13 6 3.6565 -5.9682 0.0002
14 6 4.4066 -7.1280 -0.0008
15 6 3.7775 -8.3596 -0.0019
16 6 2.3970 -8.4332 -0.0074
17 6 1.7148 -9.7769 -0.0153
18 7 1.4881 -10.2191 1.3671
19 6 0.8237 -11.5289 1.3985
20 6 0.5385 -12.0910 2.7927
21 6 -0.4339 -11.2305 3.6167
22 6 0.4632 -11.5202 4.8317
23 6 1.6131 -11.7328 3.8328
24 6 1.1754 -12.5262 0.2927
25 6 -0.1891 -11.8340 0.2931
26 6 1.6422 -7.2759 -0.0001
27 1 -0.4849 0.8401 0.0004
28 1 0.6246 -2.5570 -0.8896
29 1 0.6241 -2.5567 0.8903
30 1 2.8719 -3.6043 0.8905
31 1 2.8719 -3.6044 -0.8895
32 1 4.1482 -5.0065 0.0009
33 1 5.4851 -7.0731 -0.0008
34 1 4.3657 -9.2653 -0.0031
35 1 0.7586 -9.6959 -0.5323
36 1 2.3458 -10.5017 -0.5298
37 1 0.9594 -9.5328 1.8842
38 1 0.2812 -13.1500 2.7777
39 1 -0.4450 -10.1810 3.3225
40 1 -1.4329 -11.6585 3.6996
41 1 0.1842 -12.4229 5.3750
42 1 0.6057 -10.6590 5.4845
43 1 2.2664 -12.5664 4.0904
44 1 2.1615 -10.8207 3.5977
45 1 1.8993 -12.2102 -0.4583
46 1 1.2037 -13.5830 0.5584
47 1 -1.0585 -12.4355 0.5590
48 1 -0.3628 -11.0628 -0.4572
49 1 0.5638 -7.3340 -0.0001
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000593677249.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:43
Heat of formation + Delta-G solvation = 22.756324 kcal
Electronic energy + Delta-G solvation = -25302.692061 eV
Core-core repulsion = 21809.903702 eV
Total energy + Delta-G solvation = -3492.788359 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-40.31088 -39.65708 -37.66195 -36.80106 -33.53667 -33.27884 -30.89658 -30.25868
-29.13500 -26.90969 -25.80810 -25.29677 -24.59069 -22.72208 -22.29158 -21.70024
-20.51697 -20.13246 -19.13030 -17.82690 -16.56598 -16.16312 -16.13140 -15.72696
-15.59554 -15.33508 -15.10290 -14.69011 -14.42446 -14.15055 -13.74271 -13.21753
-12.95740 -12.90860 -12.70626 -12.57073 -12.46895 -12.33568 -12.28919 -11.58229
-11.49513 -11.33383 -11.30640 -11.24650 -11.00733 -10.86177 -10.77572 -10.69027
-10.46734 -10.34565 -10.04687 -9.86422 -9.67121 -9.32588 -8.79072 -8.45895
-8.39068 -7.84501 -6.11386 -4.16190 1.41705 1.68913 3.27938 3.32309
3.34033 3.42073 3.69287 3.83688 4.12565 4.29508 4.38317 4.40047
4.42633 4.64264 4.71683 4.74197 4.82065 4.91708 4.99477 5.10957
5.24937 5.28462 5.34891 5.40124 5.44781 5.46300 5.49569 5.63288
5.63737 5.67796 5.70544 5.71063 5.81609 5.82710 5.85632 6.00697
6.02259 6.05444 6.17158 6.31870 6.53635 6.55405 6.68233 6.72069
6.78041 6.97943 7.11808 7.49134 7.62542 7.80113 8.05076 8.22584
8.89157 9.48136 11.00157
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.018738 B = 0.002198 C = 0.002106
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1493.964511 B =12736.123910 C =13289.138304
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.061 3.939
3 Si 0.899 3.101
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.275 1.275
7 C -0.527 4.527
8 H 0.058 0.942
9 C 0.026 3.974
10 C 0.065 3.935
11 O -0.317 6.317
12 C 0.145 3.855
13 C -0.209 4.209
14 C -0.081 4.081
15 C -0.148 4.148
16 C -0.052 4.052
17 C 0.095 3.905
18 N -0.639 5.639
19 C 0.068 3.932
20 C -0.068 4.068
21 C -0.135 4.135
22 C -0.147 4.147
23 C -0.126 4.126
24 C -0.173 4.173
25 C -0.222 4.222
26 C -0.157 4.157
27 H 0.264 0.736
28 H 0.027 0.973
29 H 0.028 0.972
30 H 0.050 0.950
31 H 0.050 0.950
32 H 0.129 0.871
33 H 0.120 0.880
34 H 0.118 0.882
35 H 0.045 0.955
36 H 0.084 0.916
37 H 0.348 0.652
38 H 0.092 0.908
39 H 0.081 0.919
40 H 0.064 0.936
41 H 0.076 0.924
42 H 0.068 0.932
43 H 0.061 0.939
44 H 0.098 0.902
45 H 0.097 0.903
46 H 0.095 0.905
47 H 0.093 0.907
48 H 0.096 0.904
49 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.980 -26.851 3.762 27.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.142 4.142
3 Si 0.727 3.273
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.565 4.565
8 H 0.076 0.924
9 C -0.011 4.011
10 C -0.009 4.009
11 O -0.230 6.230
12 C 0.098 3.902
13 C -0.228 4.228
14 C -0.099 4.099
15 C -0.167 4.167
16 C -0.052 4.052
17 C -0.033 4.033
18 N -0.269 5.269
19 C -0.024 4.024
20 C -0.087 4.087
21 C -0.172 4.172
22 C -0.184 4.184
23 C -0.163 4.163
24 C -0.210 4.210
25 C -0.261 4.261
26 C -0.176 4.176
27 H 0.074 0.926
28 H 0.046 0.954
29 H 0.046 0.954
30 H 0.069 0.931
31 H 0.069 0.931
32 H 0.147 0.853
33 H 0.138 0.862
34 H 0.136 0.864
35 H 0.063 0.937
36 H 0.103 0.897
37 H 0.169 0.831
38 H 0.110 0.890
39 H 0.099 0.901
40 H 0.083 0.917
41 H 0.094 0.906
42 H 0.086 0.914
43 H 0.080 0.920
44 H 0.117 0.883
45 H 0.115 0.885
46 H 0.114 0.886
47 H 0.112 0.888
48 H 0.114 0.886
49 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 3.240 -26.923 3.850 27.389
hybrid contribution -0.234 1.297 -0.404 1.378
sum 3.006 -25.626 3.445 26.031
Atomic orbital electron populations
1.69970 1.06110 1.27097 1.49606 1.24992 0.94913 0.99389 0.94888
0.86542 0.79500 0.82567 0.78735 1.20081 1.21101 1.20072 1.20932
0.93010 0.90221 1.52380 0.92415 1.19116 0.94168 0.89020 0.98836
1.23327 0.97073 0.80813 0.99645 1.86169 1.36579 1.13221 1.87005
1.19138 0.90116 0.87439 0.93481 1.21401 0.93203 0.99874 1.08366
1.20900 0.99440 0.91938 0.97662 1.20755 0.93665 0.97376 1.04906
1.19360 0.93597 0.93147 0.99104 1.21010 0.98951 0.93345 0.89993
1.60264 1.50722 1.02794 1.13159 1.21501 0.98503 0.91548 0.90830
1.22036 0.97777 0.98724 0.90164 1.22910 0.97671 1.00327 0.96321
1.22846 0.97359 1.01671 0.96555 1.22893 0.95999 1.02752 0.94702
1.23202 0.98459 0.97946 1.01408 1.23590 0.93915 1.04512 1.04124
1.20268 0.99947 0.89552 1.07815 0.92636 0.95443 0.95411 0.93129
0.93148 0.85272 0.86163 0.86382 0.93709 0.89744 0.83146 0.88978
0.90076 0.91706 0.90578 0.91355 0.92032 0.88315 0.88479 0.88626
0.88833 0.88562 0.85848
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16
2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16
4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16
5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16
8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16
9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16
10 C 0.07 1.41 4.68 37.16 0.17 1.58 16
11 O -0.32 -6.54 10.14 -19.44 -0.20 -6.74 16
12 C 0.15 2.53 6.69 -39.22 -0.26 2.26 16
13 C -0.21 -3.28 9.04 -39.43 -0.36 -3.64 16
14 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16
15 C -0.15 -1.83 9.70 -39.56 -0.38 -2.21 16
16 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16
17 C 0.09 0.95 4.92 -4.98 -0.02 0.93 16
18 N -0.64 -6.08 5.51 -101.22 -0.56 -6.64 16
19 C 0.07 0.57 2.57 -131.60 -0.34 0.23 16
20 C -0.07 -0.52 3.77 -89.81 -0.34 -0.85 16
21 C -0.13 -1.02 7.59 -25.92 -0.20 -1.21 16
22 C -0.15 -1.07 8.08 -25.92 -0.21 -1.28 16
23 C -0.13 -1.00 7.55 -25.91 -0.20 -1.20 16
24 C -0.17 -1.34 9.56 -26.73 -0.26 -1.59 16
25 C -0.22 -1.77 9.57 -26.73 -0.26 -2.02 16
26 C -0.16 -2.33 9.64 -39.43 -0.38 -2.71 16
27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16
31 H 0.05 1.03 7.66 -51.92 -0.40 0.64 16
32 H 0.13 2.00 6.30 -52.48 -0.33 1.67 16
33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16
34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16
35 H 0.04 0.44 6.15 -51.93 -0.32 0.12 16
36 H 0.08 0.79 6.15 -51.93 -0.32 0.47 16
37 H 0.35 3.47 7.73 -39.29 -0.30 3.17 16
38 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16
39 H 0.08 0.67 7.10 -51.93 -0.37 0.30 16
40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.10 0.92 7.14 -51.93 -0.37 0.55 16
45 H 0.10 0.76 6.21 -51.93 -0.32 0.44 16
46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
47 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16
48 H 0.10 0.82 6.21 -51.93 -0.32 0.49 16
49 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16
LS Contribution 390.30 15.07 5.88 5.88
Total: -1.00 -29.46 390.30 -11.77 -41.23
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: -8.07 Total: 3.06 kcal
Atomic # 6 Polarization: -22.74 SS G_CDS: -4.54 Total: -27.28 kcal
Atomic # 7 Polarization: -32.58 SS G_CDS: 0.18 Total: -32.41 kcal
Atomic # 8 Polarization: -6.54 SS G_CDS: -0.20 Total: -6.74 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -29.46 -11.77 -41.23 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593677249.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.986 kcal
(2) G-P(sol) polarization free energy of solvation -29.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.756 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds