Wall clock time and date at job start Tue Mar 31 2020 12:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47059 * 239.99717 * 3 2 1 5 5 H 1.48500 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46884 * 120.00497 * 3 2 1 7 7 C 1.37875 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47221 * 179.97438 * 9 7 2 11 11 O 1.42893 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.35904 * 117.00216 * 179.97438 * 11 10 9 13 13 C 1.38751 * 120.05412 * 0.02562 * 12 11 10 14 14 C 1.38121 * 119.94641 * 180.02562 * 13 12 11 15 15 C 1.38291 * 120.05218 * 0.02562 * 14 13 12 16 16 C 1.38241 * 120.11180 * 0.25948 * 15 14 13 17 17 C 1.50696 * 119.97243 * 179.70308 * 16 15 14 18 18 N 1.46898 * 109.47368 * 89.99261 * 17 16 15 19 19 C 1.46902 * 111.00040 * 180.02562 * 18 17 16 20 20 C 1.52998 * 115.55194 * 179.91271 * 19 18 17 21 21 C 1.53784 * 113.61335 * 63.08191 * 20 19 18 22 22 C 1.53781 * 87.08131 * 220.01992 * 21 20 19 23 23 C 1.53784 * 113.61229 * 325.58532 * 20 19 18 24 24 C 1.53005 * 117.49848 * 34.20830 * 19 18 17 25 25 C 1.52998 * 117.49874 * 325.58615 * 19 18 17 26 26 C 1.38173 * 120.05599 * 359.44059 * 16 15 14 27 27 H 0.97004 * 119.99409 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46932 * 59.99471 * 9 7 2 29 29 H 1.08994 * 109.46712 * 299.99734 * 9 7 2 30 30 H 1.09001 * 109.46914 * 59.99436 * 10 9 7 31 31 H 1.09007 * 109.47065 * 299.99829 * 10 9 7 32 32 H 1.08007 * 120.02525 * 0.04297 * 13 12 11 33 33 H 1.07998 * 119.97579 * 180.02562 * 14 13 12 34 34 H 1.08002 * 119.93997 * 179.97438 * 15 14 13 35 35 H 1.09003 * 109.47405 * 209.99619 * 17 16 15 36 36 H 1.09005 * 109.46844 * 329.99294 * 17 16 15 37 37 H 1.00895 * 111.00128 * 56.05293 * 18 17 16 38 38 H 1.08998 * 112.85401 * 194.38992 * 20 19 18 39 39 H 1.09002 * 113.61392 * 334.56882 * 21 20 19 40 40 H 1.08997 * 113.61281 * 105.46963 * 21 20 19 41 41 H 1.08996 * 113.61209 * 270.88220 * 22 21 20 42 42 H 1.08999 * 113.61392 * 139.97855 * 22 21 20 43 43 H 1.08995 * 113.61524 * 254.52056 * 23 20 19 44 44 H 1.08993 * 113.61411 * 25.43183 * 23 20 19 45 45 H 1.08994 * 117.49490 * 359.97438 * 24 19 18 46 46 H 1.09003 * 117.49772 * 145.02140 * 24 19 18 47 47 H 1.09008 * 117.49667 * 214.97647 * 25 19 18 48 48 H 1.08991 * 117.50097 * 359.97438 * 25 19 18 49 49 H 1.08001 * 120.02637 * 180.25972 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 0.0011 12 6 2.2708 -6.0394 0.0007 13 6 3.6565 -5.9682 0.0002 14 6 4.4066 -7.1280 -0.0008 15 6 3.7775 -8.3596 -0.0019 16 6 2.3970 -8.4332 -0.0074 17 6 1.7148 -9.7769 -0.0153 18 7 1.4881 -10.2191 1.3671 19 6 0.8237 -11.5289 1.3985 20 6 0.5385 -12.0910 2.7927 21 6 -0.4339 -11.2305 3.6167 22 6 0.4632 -11.5202 4.8317 23 6 1.6131 -11.7328 3.8328 24 6 1.1754 -12.5262 0.2927 25 6 -0.1891 -11.8340 0.2931 26 6 1.6422 -7.2759 -0.0001 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 4.1482 -5.0065 0.0009 33 1 5.4851 -7.0731 -0.0008 34 1 4.3657 -9.2653 -0.0031 35 1 0.7586 -9.6959 -0.5323 36 1 2.3458 -10.5017 -0.5298 37 1 0.9594 -9.5328 1.8842 38 1 0.2812 -13.1500 2.7777 39 1 -0.4450 -10.1810 3.3225 40 1 -1.4329 -11.6585 3.6996 41 1 0.1842 -12.4229 5.3750 42 1 0.6057 -10.6590 5.4845 43 1 2.2664 -12.5664 4.0904 44 1 2.1615 -10.8207 3.5977 45 1 1.8993 -12.2102 -0.4583 46 1 1.2037 -13.5830 0.5584 47 1 -1.0585 -12.4355 0.5590 48 1 -0.3628 -11.0628 -0.4572 49 1 0.5638 -7.3340 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593677249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:43 Heat of formation + Delta-G solvation = 22.756324 kcal Electronic energy + Delta-G solvation = -25302.692061 eV Core-core repulsion = 21809.903702 eV Total energy + Delta-G solvation = -3492.788359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.31088 -39.65708 -37.66195 -36.80106 -33.53667 -33.27884 -30.89658 -30.25868 -29.13500 -26.90969 -25.80810 -25.29677 -24.59069 -22.72208 -22.29158 -21.70024 -20.51697 -20.13246 -19.13030 -17.82690 -16.56598 -16.16312 -16.13140 -15.72696 -15.59554 -15.33508 -15.10290 -14.69011 -14.42446 -14.15055 -13.74271 -13.21753 -12.95740 -12.90860 -12.70626 -12.57073 -12.46895 -12.33568 -12.28919 -11.58229 -11.49513 -11.33383 -11.30640 -11.24650 -11.00733 -10.86177 -10.77572 -10.69027 -10.46734 -10.34565 -10.04687 -9.86422 -9.67121 -9.32588 -8.79072 -8.45895 -8.39068 -7.84501 -6.11386 -4.16190 1.41705 1.68913 3.27938 3.32309 3.34033 3.42073 3.69287 3.83688 4.12565 4.29508 4.38317 4.40047 4.42633 4.64264 4.71683 4.74197 4.82065 4.91708 4.99477 5.10957 5.24937 5.28462 5.34891 5.40124 5.44781 5.46300 5.49569 5.63288 5.63737 5.67796 5.70544 5.71063 5.81609 5.82710 5.85632 6.00697 6.02259 6.05444 6.17158 6.31870 6.53635 6.55405 6.68233 6.72069 6.78041 6.97943 7.11808 7.49134 7.62542 7.80113 8.05076 8.22584 8.89157 9.48136 11.00157 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.002198 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.964511 B =12736.123910 C =13289.138304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.317 6.317 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.081 4.081 15 C -0.148 4.148 16 C -0.052 4.052 17 C 0.095 3.905 18 N -0.639 5.639 19 C 0.068 3.932 20 C -0.068 4.068 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.126 4.126 24 C -0.173 4.173 25 C -0.222 4.222 26 C -0.157 4.157 27 H 0.264 0.736 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.348 0.652 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -26.851 3.762 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.009 4.009 11 O -0.230 6.230 12 C 0.098 3.902 13 C -0.228 4.228 14 C -0.099 4.099 15 C -0.167 4.167 16 C -0.052 4.052 17 C -0.033 4.033 18 N -0.269 5.269 19 C -0.024 4.024 20 C -0.087 4.087 21 C -0.172 4.172 22 C -0.184 4.184 23 C -0.163 4.163 24 C -0.210 4.210 25 C -0.261 4.261 26 C -0.176 4.176 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.169 0.831 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.240 -26.923 3.850 27.389 hybrid contribution -0.234 1.297 -0.404 1.378 sum 3.006 -25.626 3.445 26.031 Atomic orbital electron populations 1.69970 1.06110 1.27097 1.49606 1.24992 0.94913 0.99389 0.94888 0.86542 0.79500 0.82567 0.78735 1.20081 1.21101 1.20072 1.20932 0.93010 0.90221 1.52380 0.92415 1.19116 0.94168 0.89020 0.98836 1.23327 0.97073 0.80813 0.99645 1.86169 1.36579 1.13221 1.87005 1.19138 0.90116 0.87439 0.93481 1.21401 0.93203 0.99874 1.08366 1.20900 0.99440 0.91938 0.97662 1.20755 0.93665 0.97376 1.04906 1.19360 0.93597 0.93147 0.99104 1.21010 0.98951 0.93345 0.89993 1.60264 1.50722 1.02794 1.13159 1.21501 0.98503 0.91548 0.90830 1.22036 0.97777 0.98724 0.90164 1.22910 0.97671 1.00327 0.96321 1.22846 0.97359 1.01671 0.96555 1.22893 0.95999 1.02752 0.94702 1.23202 0.98459 0.97946 1.01408 1.23590 0.93915 1.04512 1.04124 1.20268 0.99947 0.89552 1.07815 0.92636 0.95443 0.95411 0.93129 0.93148 0.85272 0.86163 0.86382 0.93709 0.89744 0.83146 0.88978 0.90076 0.91706 0.90578 0.91355 0.92032 0.88315 0.88479 0.88626 0.88833 0.88562 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.41 4.68 37.16 0.17 1.58 16 11 O -0.32 -6.54 10.14 -19.44 -0.20 -6.74 16 12 C 0.15 2.53 6.69 -39.22 -0.26 2.26 16 13 C -0.21 -3.28 9.04 -39.43 -0.36 -3.64 16 14 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 15 C -0.15 -1.83 9.70 -39.56 -0.38 -2.21 16 16 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16 17 C 0.09 0.95 4.92 -4.98 -0.02 0.93 16 18 N -0.64 -6.08 5.51 -101.22 -0.56 -6.64 16 19 C 0.07 0.57 2.57 -131.60 -0.34 0.23 16 20 C -0.07 -0.52 3.77 -89.81 -0.34 -0.85 16 21 C -0.13 -1.02 7.59 -25.92 -0.20 -1.21 16 22 C -0.15 -1.07 8.08 -25.92 -0.21 -1.28 16 23 C -0.13 -1.00 7.55 -25.91 -0.20 -1.20 16 24 C -0.17 -1.34 9.56 -26.73 -0.26 -1.59 16 25 C -0.22 -1.77 9.57 -26.73 -0.26 -2.02 16 26 C -0.16 -2.33 9.64 -39.43 -0.38 -2.71 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 31 H 0.05 1.03 7.66 -51.92 -0.40 0.64 16 32 H 0.13 2.00 6.30 -52.48 -0.33 1.67 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.04 0.44 6.15 -51.93 -0.32 0.12 16 36 H 0.08 0.79 6.15 -51.93 -0.32 0.47 16 37 H 0.35 3.47 7.73 -39.29 -0.30 3.17 16 38 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 39 H 0.08 0.67 7.10 -51.93 -0.37 0.30 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.92 7.14 -51.93 -0.37 0.55 16 45 H 0.10 0.76 6.21 -51.93 -0.32 0.44 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 48 H 0.10 0.82 6.21 -51.93 -0.32 0.49 16 49 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -29.46 390.30 -11.77 -41.23 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.07 Total: 3.06 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -4.54 Total: -27.28 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.18 Total: -32.41 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.20 Total: -6.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.46 -11.77 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593677249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.986 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds