Wall clock time and date at job start Tue Mar 31 2020 12:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47059 * 239.99717 * 3 2 1 5 5 H 1.48500 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46884 * 120.00497 * 3 2 1 7 7 C 1.37875 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47221 * 179.97438 * 9 7 2 11 11 O 1.42893 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.35904 * 117.00216 * 179.97438 * 11 10 9 13 13 C 1.38751 * 120.05412 * 0.02562 * 12 11 10 14 14 C 1.38121 * 119.94641 * 180.02562 * 13 12 11 15 15 C 1.38291 * 120.05218 * 0.02562 * 14 13 12 16 16 C 1.38241 * 120.11180 * 0.25948 * 15 14 13 17 17 C 1.50696 * 119.97243 * 179.70308 * 16 15 14 18 18 N 1.46898 * 109.47368 * 89.99261 * 17 16 15 19 19 C 1.46902 * 111.00040 * 180.02562 * 18 17 16 20 20 C 1.52998 * 115.55194 * 179.91271 * 19 18 17 21 21 C 1.53784 * 113.61335 * 63.08191 * 20 19 18 22 22 C 1.53781 * 87.08131 * 220.01992 * 21 20 19 23 23 C 1.53784 * 113.61229 * 325.58532 * 20 19 18 24 24 C 1.53005 * 117.49848 * 34.20830 * 19 18 17 25 25 C 1.52998 * 117.49874 * 325.58615 * 19 18 17 26 26 C 1.38173 * 120.05599 * 359.44059 * 16 15 14 27 27 H 0.97004 * 119.99409 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46932 * 59.99471 * 9 7 2 29 29 H 1.08994 * 109.46712 * 299.99734 * 9 7 2 30 30 H 1.09001 * 109.46914 * 59.99436 * 10 9 7 31 31 H 1.09007 * 109.47065 * 299.99829 * 10 9 7 32 32 H 1.08007 * 120.02525 * 0.04297 * 13 12 11 33 33 H 1.07998 * 119.97579 * 180.02562 * 14 13 12 34 34 H 1.08002 * 119.93997 * 179.97438 * 15 14 13 35 35 H 1.09003 * 109.47405 * 209.99619 * 17 16 15 36 36 H 1.09005 * 109.46844 * 329.99294 * 17 16 15 37 37 H 1.00895 * 111.00128 * 56.05293 * 18 17 16 38 38 H 1.08998 * 112.85401 * 194.38992 * 20 19 18 39 39 H 1.09002 * 113.61392 * 334.56882 * 21 20 19 40 40 H 1.08997 * 113.61281 * 105.46963 * 21 20 19 41 41 H 1.08996 * 113.61209 * 270.88220 * 22 21 20 42 42 H 1.08999 * 113.61392 * 139.97855 * 22 21 20 43 43 H 1.08995 * 113.61524 * 254.52056 * 23 20 19 44 44 H 1.08993 * 113.61411 * 25.43183 * 23 20 19 45 45 H 1.08994 * 117.49490 * 359.97438 * 24 19 18 46 46 H 1.09003 * 117.49772 * 145.02140 * 24 19 18 47 47 H 1.09008 * 117.49667 * 214.97647 * 25 19 18 48 48 H 1.08991 * 117.50097 * 359.97438 * 25 19 18 49 49 H 1.08001 * 120.02637 * 180.25972 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 0.0011 12 6 2.2708 -6.0394 0.0007 13 6 3.6565 -5.9682 0.0002 14 6 4.4066 -7.1280 -0.0008 15 6 3.7775 -8.3596 -0.0019 16 6 2.3970 -8.4332 -0.0074 17 6 1.7148 -9.7769 -0.0153 18 7 1.4881 -10.2191 1.3671 19 6 0.8237 -11.5289 1.3985 20 6 0.5385 -12.0910 2.7927 21 6 -0.4339 -11.2305 3.6167 22 6 0.4632 -11.5202 4.8317 23 6 1.6131 -11.7328 3.8328 24 6 1.1754 -12.5262 0.2927 25 6 -0.1891 -11.8340 0.2931 26 6 1.6422 -7.2759 -0.0001 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 4.1482 -5.0065 0.0009 33 1 5.4851 -7.0731 -0.0008 34 1 4.3657 -9.2653 -0.0031 35 1 0.7586 -9.6959 -0.5323 36 1 2.3458 -10.5017 -0.5298 37 1 0.9594 -9.5328 1.8842 38 1 0.2812 -13.1500 2.7777 39 1 -0.4450 -10.1810 3.3225 40 1 -1.4329 -11.6585 3.6996 41 1 0.1842 -12.4229 5.3750 42 1 0.6057 -10.6590 5.4845 43 1 2.2664 -12.5664 4.0904 44 1 2.1615 -10.8207 3.5977 45 1 1.8993 -12.2102 -0.4583 46 1 1.2037 -13.5830 0.5584 47 1 -1.0585 -12.4355 0.5590 48 1 -0.3628 -11.0628 -0.4572 49 1 0.5638 -7.3340 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593677249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:42 Heat of formation + Delta-G solvation = 8.484496 kcal Electronic energy + Delta-G solvation = -25303.310934 eV Core-core repulsion = 21809.903702 eV Total energy + Delta-G solvation = -3493.407232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.22235 -40.67813 -38.79765 -37.63702 -35.49797 -34.26915 -32.59675 -31.36134 -30.51236 -27.65812 -27.00364 -26.41634 -25.67644 -23.53462 -23.43544 -23.17852 -21.63786 -21.03731 -19.77037 -19.20898 -18.24126 -17.22799 -17.02577 -16.95820 -16.83112 -16.74996 -16.42682 -15.77476 -15.46170 -15.10737 -14.47123 -14.38000 -14.33767 -14.27905 -14.03747 -13.52100 -13.44071 -13.24078 -13.22129 -12.98005 -12.86972 -12.58184 -12.55236 -12.40608 -12.14192 -11.99428 -11.88939 -11.64758 -11.59510 -11.57017 -11.40997 -11.31314 -10.97406 -10.65558 -10.62817 -9.86265 -9.13725 -9.09982 -8.27925 -6.41908 0.31784 0.53068 1.40044 1.44102 1.52122 2.25616 2.49595 2.69166 2.83961 3.06386 3.26090 3.67761 3.77116 3.81158 3.82287 3.89632 4.03223 4.10410 4.11980 4.19097 4.23008 4.24941 4.30066 4.35569 4.43962 4.54125 4.61701 4.71136 4.71940 4.80110 4.85321 4.90416 5.00342 5.02547 5.09269 5.12431 5.13284 5.20659 5.24425 5.29814 5.40130 5.41542 5.44683 5.51511 5.62901 5.66947 5.70128 5.88915 6.04825 6.07154 6.33076 6.55633 6.72636 7.28298 8.85058 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.002198 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.964511 B =12736.123910 C =13289.138304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.085 3.915 11 O -0.343 6.343 12 C 0.107 3.893 13 C -0.221 4.221 14 C -0.078 4.078 15 C -0.139 4.139 16 C -0.045 4.045 17 C 0.101 3.899 18 N -0.642 5.642 19 C 0.060 3.940 20 C -0.063 4.063 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.127 4.127 24 C -0.167 4.167 25 C -0.223 4.223 26 C -0.164 4.164 27 H 0.267 0.733 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.343 0.657 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -28.621 3.826 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.008 4.008 10 C 0.011 3.989 11 O -0.257 6.257 12 C 0.062 3.938 13 C -0.240 4.240 14 C -0.096 4.096 15 C -0.157 4.157 16 C -0.045 4.045 17 C -0.027 4.027 18 N -0.271 5.271 19 C -0.032 4.032 20 C -0.082 4.082 21 C -0.175 4.175 22 C -0.182 4.182 23 C -0.164 4.164 24 C -0.204 4.204 25 C -0.263 4.263 26 C -0.183 4.183 27 H 0.076 0.924 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.162 0.838 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.126 0.874 47 H 0.118 0.882 48 H 0.107 0.893 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.315 -28.727 3.912 29.476 hybrid contribution -0.897 1.670 -0.416 1.941 sum 4.419 -27.057 3.496 27.637 Atomic orbital electron populations 1.70120 1.08071 1.28321 1.50533 1.26056 0.95836 1.03727 0.94107 0.85333 0.78125 0.77130 0.79464 1.18791 1.20738 1.18800 1.21366 0.93825 0.91008 1.52293 0.91108 1.18957 0.94539 0.91417 0.95932 1.22846 0.95373 0.80242 1.00423 1.86077 1.37518 1.13792 1.88334 1.19469 0.91101 0.86786 0.96472 1.21504 0.92553 1.00955 1.09002 1.21246 1.00870 0.91183 0.96287 1.21154 0.93650 0.98223 1.02707 1.19627 0.93969 0.93377 0.97534 1.20986 0.99023 0.92162 0.90550 1.60281 1.51043 1.03236 1.12556 1.21582 0.98978 0.91119 0.91479 1.22051 0.97345 0.99221 0.89562 1.22900 0.98150 0.99792 0.96622 1.22855 0.96968 1.01968 0.96369 1.22837 0.96182 1.02216 0.95168 1.23283 0.97979 0.98439 1.00734 1.23589 0.94427 1.04538 1.03704 1.20412 1.00226 0.89607 1.08096 0.92412 0.98408 0.98380 0.92273 0.92246 0.85563 0.83173 0.83495 0.93717 0.88313 0.83753 0.87766 0.91225 0.91132 0.89384 0.91956 0.91475 0.89876 0.88400 0.87383 0.88206 0.89273 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.55 -31.16 9.11 25.60 0.23 -30.92 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.59 5.34 29.85 0.16 1.75 16 10 C 0.09 3.82 4.68 71.98 0.34 4.15 16 11 O -0.34 -14.88 10.14 -92.47 -0.94 -15.82 16 12 C 0.11 3.81 6.69 22.50 0.15 3.96 16 13 C -0.22 -6.83 9.04 22.36 0.20 -6.63 16 14 C -0.08 -1.87 10.04 22.25 0.22 -1.64 16 15 C -0.14 -3.03 9.70 22.28 0.22 -2.82 16 16 C -0.04 -1.05 5.39 -19.88 -0.11 -1.16 16 17 C 0.10 1.84 4.92 85.56 0.42 2.27 16 18 N -0.64 -11.36 5.51 -474.14 -2.61 -13.98 16 19 C 0.06 0.90 2.57 3.53 0.01 0.91 16 20 C -0.06 -0.84 3.77 -10.27 -0.04 -0.88 16 21 C -0.14 -1.94 7.59 31.12 0.24 -1.71 16 22 C -0.14 -1.94 8.08 31.12 0.25 -1.69 16 23 C -0.13 -1.84 7.55 31.12 0.23 -1.60 16 24 C -0.17 -2.17 9.56 30.60 0.29 -1.88 16 25 C -0.22 -3.19 9.57 30.59 0.29 -2.90 16 26 C -0.16 -4.95 9.64 22.37 0.22 -4.73 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 31 H 0.06 2.50 7.66 -2.38 -0.02 2.48 16 32 H 0.13 3.88 6.30 -2.91 -0.02 3.86 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.04 0.83 6.15 -2.39 -0.01 0.82 16 36 H 0.10 1.56 6.15 -2.38 -0.01 1.54 16 37 H 0.34 6.71 7.73 -89.70 -0.69 6.02 16 38 H 0.10 1.17 8.13 -2.39 -0.02 1.15 16 39 H 0.07 1.14 7.10 -2.39 -0.02 1.13 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.48 7.14 -2.39 -0.02 1.47 16 45 H 0.10 1.26 6.21 -2.39 -0.01 1.25 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.09 1.41 6.21 -2.39 -0.01 1.40 16 49 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -65.19 390.30 2.79 -62.40 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.24 Total: 23.50 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.79 Total: -44.98 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -2.33 Total: -70.77 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.94 Total: -15.82 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.19 2.79 -62.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593677249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.884 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds