Wall clock time and date at job start Tue Mar 31 2020 11:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36355 * 125.71628 * 2 1 4 4 C 1.35104 * 108.53867 * 179.73083 * 3 2 1 5 5 C 1.40348 * 107.74572 * 0.26006 * 4 3 2 6 6 C 1.36521 * 107.33176 * 0.02562 * 5 4 3 7 7 C 1.47226 * 126.09520 * 179.97438 * 6 5 4 8 8 N 1.31466 * 126.50359 * 173.51273 * 7 6 5 9 9 N 1.28511 * 109.92815 * 179.82312 * 8 7 6 10 10 C 1.31297 * 110.15340 * 0.45473 * 9 8 7 11 11 N 1.38485 * 126.35555 * 179.75180 * 10 9 8 12 12 C 1.46852 * 110.99571 * 236.01737 * 11 10 9 13 13 C 1.53038 * 109.52277 * 185.83612 * 12 11 10 14 14 C 1.53120 * 109.27869 * 300.82629 * 13 12 11 15 15 C 1.53111 * 109.16573 * 57.65104 * 14 13 12 16 16 H 1.09000 * 109.50171 * 62.32299 * 15 14 13 17 17 C 1.50692 * 109.50638 * 182.40694 * 15 14 13 18 18 H 1.08002 * 120.00349 * 120.00355 * 17 15 14 19 19 C 1.37878 * 119.99940 * 299.99635 * 17 15 14 20 20 N 1.31517 * 120.00071 * 180.02562 * 19 17 15 21 21 Si 1.86799 * 120.00058 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.46993 * 89.99559 * 21 19 17 23 23 H 1.48498 * 109.47592 * 209.99529 * 21 19 17 24 24 H 1.48497 * 109.47203 * 330.00117 * 21 19 17 25 25 C 1.46844 * 111.00120 * 0.22483 * 11 10 9 26 26 N 1.36622 * 107.28713 * 359.72507 * 10 9 8 27 27 C 1.46507 * 127.17967 * 180.02562 * 26 10 9 28 28 H 1.09000 * 109.46811 * 95.49693 * 1 2 3 29 29 H 1.08997 * 109.47431 * 215.49476 * 1 2 3 30 30 H 1.08996 * 109.47158 * 335.49986 * 1 2 3 31 31 H 1.07996 * 125.72662 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.12993 * 180.28895 * 4 3 2 33 33 H 1.07997 * 126.33218 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46580 * 305.85574 * 12 11 10 35 35 H 1.08999 * 109.46427 * 65.83633 * 12 11 10 36 36 H 1.08999 * 109.50317 * 60.76365 * 13 12 11 37 37 H 1.08997 * 109.50658 * 180.87805 * 13 12 11 38 38 H 1.09003 * 109.52244 * 177.56137 * 14 13 12 39 39 H 1.09006 * 109.51903 * 297.68192 * 14 13 12 40 40 H 0.96997 * 119.99744 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.46315 * 294.18114 * 25 11 10 42 42 H 1.08998 * 109.45923 * 54.14562 * 25 11 10 43 43 H 1.09008 * 109.46871 * 264.07941 * 27 26 10 44 44 H 1.08995 * 109.47291 * 24.08103 * 27 26 10 45 45 H 1.09002 * 109.47118 * 144.08201 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2609 1.1071 0.0000 4 6 3.5517 0.7081 0.0060 5 6 3.5656 -0.6953 0.0039 6 6 2.2665 -1.1149 -0.0041 7 6 1.8068 -2.5136 -0.0094 8 7 0.5645 -2.9289 0.1023 9 7 0.5258 -4.2125 0.0544 10 6 1.7387 -4.6969 -0.0809 11 7 2.0836 -6.0356 -0.1628 12 6 3.0629 -6.3910 0.8722 13 6 3.5288 -7.8334 0.6618 14 6 2.3200 -8.7706 0.7331 15 6 1.2942 -8.3491 -0.3225 16 1 1.7323 -8.4483 -1.3157 17 6 0.0756 -9.2296 -0.2198 18 1 -0.8896 -8.7934 -0.0087 19 6 0.1928 -10.5921 -0.3955 20 7 -0.8708 -11.3605 -0.3064 21 14 1.8622 -11.3466 -0.7602 22 1 2.5333 -11.7038 0.5155 23 1 1.6838 -12.5688 -1.5846 24 1 2.6969 -10.3672 -1.5012 25 6 0.8931 -6.8916 -0.0836 26 7 2.5972 -3.6351 -0.1264 27 6 4.0545 -3.6804 -0.2703 28 1 -0.3633 -0.0984 -1.0230 29 1 -0.3634 -0.8367 0.5967 30 1 -0.3633 0.9351 0.4261 31 1 1.9172 2.1309 -0.0004 32 1 4.4177 1.3534 0.0119 33 1 4.4420 -1.3265 0.0070 34 1 3.9192 -5.7197 0.8078 35 1 2.6019 -6.2982 1.8555 36 1 4.0023 -7.9240 -0.3158 37 1 4.2439 -8.1020 1.4393 38 1 2.6410 -9.7944 0.5407 39 1 1.8701 -8.7101 1.7241 40 1 -0.7883 -12.3191 -0.4296 41 1 0.4423 -6.7963 0.9042 42 1 0.1734 -6.5839 -0.8422 43 1 4.5187 -3.6223 0.7142 44 1 4.3430 -4.6137 -0.7537 45 1 4.3858 -2.8386 -0.8785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597279275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:01 Heat of formation + Delta-G solvation = 151.512000 kcal Electronic energy + Delta-G solvation = -26594.760814 eV Core-core repulsion = 23036.308128 eV Total energy + Delta-G solvation = -3558.452686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.83834 -41.17238 -38.70539 -35.19782 -34.06251 -32.97780 -32.31135 -30.67198 -30.48508 -27.82622 -27.77252 -26.53258 -25.19435 -24.25143 -22.68746 -21.50216 -21.24380 -20.32606 -19.72646 -18.96727 -17.66470 -16.97833 -16.52440 -16.44772 -15.84086 -15.31273 -15.03421 -14.65929 -14.28579 -14.17163 -13.70855 -13.54346 -13.31212 -13.21474 -13.05925 -12.97180 -12.60218 -12.53169 -12.40721 -12.35965 -12.06505 -11.42895 -11.27436 -11.15827 -10.70782 -10.51122 -10.28181 -10.18339 -10.14312 -9.93206 -9.73876 -9.28718 -9.02860 -8.90092 -8.60170 -8.55634 -7.60263 -6.08924 -4.09044 1.19997 2.04561 2.30888 2.66377 2.82504 3.21519 3.24061 3.35736 3.38096 3.85437 4.15735 4.38549 4.48070 4.66652 4.78802 4.88077 4.94061 5.01665 5.08562 5.14079 5.19744 5.20925 5.29684 5.34890 5.45036 5.52589 5.65276 5.67615 5.89788 5.91823 5.99357 6.01356 6.06119 6.15874 6.28045 6.47231 6.53695 6.61722 6.65525 6.73182 6.88412 6.98803 7.06248 7.11871 7.40934 7.50868 7.73231 8.48654 8.84338 8.95525 9.52058 11.04192 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.003123 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.576157 B = 8964.583986 C = 9713.243947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.425 5.425 3 C 0.002 3.998 4 C -0.199 4.199 5 C -0.180 4.180 6 C 0.093 3.907 7 C 0.225 3.775 8 N -0.278 5.278 9 N -0.315 5.315 10 C 0.384 3.616 11 N -0.453 5.453 12 C 0.058 3.942 13 C -0.119 4.119 14 C -0.127 4.127 15 C 0.020 3.980 16 H 0.038 0.962 17 C -0.514 4.514 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.264 1.264 25 C 0.092 3.908 26 N -0.478 5.478 27 C 0.070 3.930 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.168 0.832 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.264 0.736 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 22.552 1.621 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.100 5.100 3 C -0.131 4.131 4 C -0.223 4.223 5 C -0.208 4.208 6 C -0.022 4.022 7 C -0.040 4.040 8 N -0.119 5.119 9 N -0.161 5.161 10 C 0.029 3.971 11 N -0.177 5.177 12 C -0.069 4.069 13 C -0.157 4.157 14 C -0.165 4.165 15 C 0.001 3.999 16 H 0.056 0.944 17 C -0.552 4.552 18 H 0.095 0.905 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.189 1.189 25 C -0.033 4.033 26 N -0.174 5.174 27 C -0.073 4.073 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.185 0.815 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.823 22.220 1.312 24.750 hybrid contribution 1.981 -0.511 0.282 2.065 sum 12.804 21.709 1.593 25.254 Atomic orbital electron populations 1.22248 0.75927 1.04859 1.04282 1.43981 1.06835 1.04607 1.54576 1.21970 0.90438 0.91184 1.09488 1.20754 0.96089 0.94546 1.10917 1.21043 0.94156 0.95602 1.09962 1.16826 0.89700 0.82120 1.13519 1.21176 0.87642 0.86745 1.08422 1.74298 1.15165 1.04427 1.18012 1.74673 1.16690 1.01639 1.23077 1.22914 0.85926 0.88159 1.00116 1.58818 1.17214 0.95780 1.45888 1.22314 0.94031 0.98453 0.92104 1.21687 0.99054 0.92994 1.01922 1.22113 0.95154 0.97557 1.01665 1.19234 0.95345 0.90315 0.95006 0.94426 1.20911 0.93952 0.91241 1.49138 0.90516 1.24969 0.96402 0.97099 0.94507 1.69893 1.28849 1.05028 1.49864 0.86852 0.84900 0.78434 0.78123 1.20632 1.22509 1.18867 1.22212 0.87039 0.92074 1.01935 1.45838 1.08814 1.05116 1.57604 1.22343 0.75789 1.05606 1.03553 0.90644 0.87935 0.89885 0.81471 0.84131 0.84195 0.91192 0.93487 0.91338 0.91694 0.92949 0.91980 0.92587 0.93231 0.89705 0.90158 0.88300 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.62 59.84 0.64 1.26 16 2 N -0.43 -4.66 3.18 -120.39 -0.38 -5.04 16 3 C 0.00 0.02 11.42 -16.66 -0.19 -0.17 16 4 C -0.20 -1.79 10.83 -39.90 -0.43 -2.22 16 5 C -0.18 -1.88 9.78 -39.41 -0.39 -2.27 16 6 C 0.09 1.18 6.85 -82.38 -0.56 0.61 16 7 C 0.23 3.44 7.84 -153.75 -1.21 2.23 16 8 N -0.28 -4.96 10.34 32.50 0.34 -4.62 16 9 N -0.32 -6.23 11.21 30.34 0.34 -5.89 16 10 C 0.38 6.76 7.21 -318.68 -2.30 4.46 16 11 N -0.45 -8.00 4.66 -174.51 -0.81 -8.81 16 12 C 0.06 0.86 5.21 -3.83 -0.02 0.84 16 13 C -0.12 -1.85 6.09 -26.65 -0.16 -2.02 16 14 C -0.13 -2.58 4.73 -26.61 -0.13 -2.71 16 15 C 0.02 0.47 1.85 -91.70 -0.17 0.30 16 16 H 0.04 0.90 7.21 -51.93 -0.37 0.52 16 17 C -0.51 -14.20 9.15 -34.44 -0.31 -14.52 16 18 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 19 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 20 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 21 Si 0.89 21.42 24.35 -169.99 -4.14 17.28 16 22 H -0.28 -6.52 6.89 56.52 0.39 -6.13 16 23 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 25 C 0.09 1.93 4.10 -3.83 -0.02 1.92 16 26 N -0.48 -6.85 3.24 -122.14 -0.40 -7.24 16 27 C 0.07 0.65 8.26 59.85 0.49 1.15 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.16 6.68 -51.93 -0.35 0.81 16 30 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.17 5.62 -52.49 -0.30 0.87 16 34 H 0.07 0.82 5.24 -51.93 -0.27 0.55 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 1.13 3.34 -51.93 -0.17 0.95 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.89 7.92 -51.93 -0.41 1.48 16 43 H 0.08 0.59 8.00 -51.92 -0.42 0.18 16 44 H 0.10 0.89 7.24 -51.93 -0.38 0.52 16 45 H 0.09 0.72 6.00 -51.93 -0.31 0.41 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -33.67 347.47 -10.27 -43.94 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.38 Total: 0.85 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -4.85 Total: -9.19 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.14 Total: -58.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.67 -10.27 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597279275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.456 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds