Wall clock time and date at job start Tue Mar 31 2020 11:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36355 * 125.71628 * 2 1 4 4 C 1.35104 * 108.53867 * 179.73083 * 3 2 1 5 5 C 1.40348 * 107.74572 * 0.26006 * 4 3 2 6 6 C 1.36521 * 107.33176 * 0.02562 * 5 4 3 7 7 C 1.47226 * 126.09520 * 179.97438 * 6 5 4 8 8 N 1.31466 * 126.50359 * 173.51273 * 7 6 5 9 9 N 1.28511 * 109.92815 * 179.82312 * 8 7 6 10 10 C 1.31297 * 110.15340 * 0.45473 * 9 8 7 11 11 N 1.38485 * 126.35555 * 179.75180 * 10 9 8 12 12 C 1.46852 * 110.99571 * 236.01737 * 11 10 9 13 13 C 1.53038 * 109.52277 * 185.83612 * 12 11 10 14 14 C 1.53120 * 109.27869 * 300.82629 * 13 12 11 15 15 C 1.53111 * 109.16573 * 57.65104 * 14 13 12 16 16 H 1.09000 * 109.50171 * 62.32299 * 15 14 13 17 17 C 1.50692 * 109.50638 * 182.40694 * 15 14 13 18 18 H 1.08002 * 120.00349 * 120.00355 * 17 15 14 19 19 C 1.37878 * 119.99940 * 299.99635 * 17 15 14 20 20 N 1.31517 * 120.00071 * 180.02562 * 19 17 15 21 21 Si 1.86799 * 120.00058 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.46993 * 89.99559 * 21 19 17 23 23 H 1.48498 * 109.47592 * 209.99529 * 21 19 17 24 24 H 1.48497 * 109.47203 * 330.00117 * 21 19 17 25 25 C 1.46844 * 111.00120 * 0.22483 * 11 10 9 26 26 N 1.36622 * 107.28713 * 359.72507 * 10 9 8 27 27 C 1.46507 * 127.17967 * 180.02562 * 26 10 9 28 28 H 1.09000 * 109.46811 * 95.49693 * 1 2 3 29 29 H 1.08997 * 109.47431 * 215.49476 * 1 2 3 30 30 H 1.08996 * 109.47158 * 335.49986 * 1 2 3 31 31 H 1.07996 * 125.72662 * 359.97438 * 3 2 1 32 32 H 1.07998 * 126.12993 * 180.28895 * 4 3 2 33 33 H 1.07997 * 126.33218 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46580 * 305.85574 * 12 11 10 35 35 H 1.08999 * 109.46427 * 65.83633 * 12 11 10 36 36 H 1.08999 * 109.50317 * 60.76365 * 13 12 11 37 37 H 1.08997 * 109.50658 * 180.87805 * 13 12 11 38 38 H 1.09003 * 109.52244 * 177.56137 * 14 13 12 39 39 H 1.09006 * 109.51903 * 297.68192 * 14 13 12 40 40 H 0.96997 * 119.99744 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.46315 * 294.18114 * 25 11 10 42 42 H 1.08998 * 109.45923 * 54.14562 * 25 11 10 43 43 H 1.09008 * 109.46871 * 264.07941 * 27 26 10 44 44 H 1.08995 * 109.47291 * 24.08103 * 27 26 10 45 45 H 1.09002 * 109.47118 * 144.08201 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2609 1.1071 0.0000 4 6 3.5517 0.7081 0.0060 5 6 3.5656 -0.6953 0.0039 6 6 2.2665 -1.1149 -0.0041 7 6 1.8068 -2.5136 -0.0094 8 7 0.5645 -2.9289 0.1023 9 7 0.5258 -4.2125 0.0544 10 6 1.7387 -4.6969 -0.0809 11 7 2.0836 -6.0356 -0.1628 12 6 3.0629 -6.3910 0.8722 13 6 3.5288 -7.8334 0.6618 14 6 2.3200 -8.7706 0.7331 15 6 1.2942 -8.3491 -0.3225 16 1 1.7323 -8.4483 -1.3157 17 6 0.0756 -9.2296 -0.2198 18 1 -0.8896 -8.7934 -0.0087 19 6 0.1928 -10.5921 -0.3955 20 7 -0.8708 -11.3605 -0.3064 21 14 1.8622 -11.3466 -0.7602 22 1 2.5333 -11.7038 0.5155 23 1 1.6838 -12.5688 -1.5846 24 1 2.6969 -10.3672 -1.5012 25 6 0.8931 -6.8916 -0.0836 26 7 2.5972 -3.6351 -0.1264 27 6 4.0545 -3.6804 -0.2703 28 1 -0.3633 -0.0984 -1.0230 29 1 -0.3634 -0.8367 0.5967 30 1 -0.3633 0.9351 0.4261 31 1 1.9172 2.1309 -0.0004 32 1 4.4177 1.3534 0.0119 33 1 4.4420 -1.3265 0.0070 34 1 3.9192 -5.7197 0.8078 35 1 2.6019 -6.2982 1.8555 36 1 4.0023 -7.9240 -0.3158 37 1 4.2439 -8.1020 1.4393 38 1 2.6410 -9.7944 0.5407 39 1 1.8701 -8.7101 1.7241 40 1 -0.7883 -12.3191 -0.4296 41 1 0.4423 -6.7963 0.9042 42 1 0.1734 -6.5839 -0.8422 43 1 4.5187 -3.6223 0.7142 44 1 4.3430 -4.6137 -0.7537 45 1 4.3858 -2.8386 -0.8785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597279275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:01 Heat of formation + Delta-G solvation = 131.329521 kcal Electronic energy + Delta-G solvation = -26595.635992 eV Core-core repulsion = 23036.308128 eV Total energy + Delta-G solvation = -3559.327864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.02327 -41.94739 -40.16565 -36.37522 -35.66493 -34.10422 -33.71398 -32.20196 -31.72744 -28.86828 -28.67830 -27.26550 -27.10720 -25.68094 -23.88220 -22.81294 -22.48888 -21.24852 -20.82944 -20.34037 -19.07133 -18.37354 -17.84520 -17.57088 -17.12001 -16.40243 -16.12970 -16.04456 -15.69140 -15.42715 -15.00933 -14.87996 -14.49414 -14.34160 -14.20363 -13.96840 -13.91175 -13.75974 -13.31638 -13.14519 -12.99317 -12.95144 -12.64616 -12.53281 -12.41991 -12.06880 -11.84806 -11.80539 -11.40897 -11.32319 -11.20915 -11.01684 -10.93215 -10.64969 -9.77174 -9.62281 -8.67483 -8.29912 -6.36002 0.20191 0.98482 1.25133 1.31728 1.39283 1.50373 1.82556 2.04374 2.21831 2.33973 2.60320 3.04977 3.20040 3.56592 3.74920 3.83390 3.92433 4.02213 4.16840 4.18536 4.23674 4.30687 4.34260 4.37077 4.41867 4.48499 4.60321 4.63317 4.66425 4.70470 4.80271 4.83046 4.86988 4.91814 5.04552 5.11932 5.23543 5.27038 5.36020 5.48413 5.53871 5.63817 5.78847 5.91955 6.09338 6.12742 6.28288 6.38178 6.70433 7.29150 7.61024 8.87346 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.029762 B = 0.003123 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.576157 B = 8964.583986 C = 9713.243947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.436 5.436 3 C 0.016 3.984 4 C -0.209 4.209 5 C -0.164 4.164 6 C 0.041 3.959 7 C 0.243 3.757 8 N -0.318 5.318 9 N -0.365 5.365 10 C 0.369 3.631 11 N -0.448 5.448 12 C 0.055 3.945 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.025 3.975 16 H 0.035 0.965 17 C -0.525 4.525 18 H 0.026 0.974 19 C 0.011 3.989 20 N -0.951 5.951 21 Si 0.956 3.044 22 H -0.259 1.259 23 H -0.301 1.301 24 H -0.239 1.239 25 C 0.112 3.888 26 N -0.470 5.470 27 C 0.056 3.944 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.204 0.796 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.113 0.887 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.267 0.733 41 H 0.028 0.972 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.705 25.205 1.732 30.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.111 5.111 3 C -0.117 4.117 4 C -0.232 4.232 5 C -0.192 4.192 6 C -0.072 4.072 7 C -0.023 4.023 8 N -0.158 5.158 9 N -0.210 5.210 10 C 0.011 3.989 11 N -0.172 5.172 12 C -0.071 4.071 13 C -0.147 4.147 14 C -0.165 4.165 15 C 0.005 3.995 16 H 0.053 0.947 17 C -0.563 4.563 18 H 0.044 0.956 19 C -0.186 4.186 20 N -0.591 5.591 21 Si 0.782 3.218 22 H -0.185 1.185 23 H -0.229 1.229 24 H -0.162 1.162 25 C -0.015 4.015 26 N -0.166 5.166 27 C -0.084 4.084 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.221 0.779 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.131 0.869 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.966 24.903 1.432 29.616 hybrid contribution 0.326 -1.068 0.261 1.147 sum 16.291 23.835 1.693 28.920 Atomic orbital electron populations 1.22257 0.75669 1.05517 1.03827 1.44227 1.07316 1.04862 1.54648 1.22716 0.90362 0.92031 1.06603 1.21172 0.97170 0.94167 1.10713 1.21454 0.93717 0.96772 1.07247 1.16983 0.91097 0.81338 1.17816 1.21737 0.87053 0.88142 1.05331 1.74226 1.17155 1.03655 1.20749 1.74537 1.18852 1.02993 1.24601 1.22772 0.86325 0.88547 1.01215 1.58778 1.15693 0.95491 1.47225 1.22518 0.94474 0.99258 0.90859 1.21667 0.97270 0.91636 1.04103 1.21989 0.96351 0.98501 0.99684 1.19090 0.94071 0.90354 0.95939 0.94700 1.21210 0.94119 0.92367 1.48630 0.95573 1.25935 1.00998 0.97470 0.94163 1.70067 1.31830 1.05486 1.51759 0.85732 0.79717 0.77459 0.78893 1.18504 1.22940 1.16249 1.21689 0.88164 0.91982 0.99663 1.46013 1.10329 1.03580 1.56634 1.22808 0.72754 1.07063 1.05790 0.91026 0.90699 0.86446 0.77948 0.81373 0.82117 0.86904 0.94328 0.90144 0.87792 0.93519 0.92990 0.92448 0.95388 0.92590 0.87374 0.87460 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 10.62 127.77 1.36 2.58 16 2 N -0.44 -8.73 3.18 -534.80 -1.70 -10.43 16 3 C 0.02 0.22 11.42 83.27 0.95 1.17 16 4 C -0.21 -2.84 10.83 22.06 0.24 -2.60 16 5 C -0.16 -2.83 9.78 22.38 0.22 -2.62 16 6 C 0.04 0.97 6.85 40.25 0.28 1.25 16 7 C 0.24 7.38 7.84 135.93 1.07 8.44 16 8 N -0.32 -11.92 10.34 -51.08 -0.53 -12.45 16 9 N -0.36 -15.30 11.21 -57.92 -0.65 -15.95 16 10 C 0.37 13.11 7.21 260.04 1.88 14.99 16 11 N -0.45 -15.70 4.66 -706.01 -3.29 -18.99 16 12 C 0.05 1.48 5.21 86.33 0.45 1.93 16 13 C -0.11 -2.99 6.09 30.65 0.19 -2.80 16 14 C -0.13 -5.01 4.73 30.67 0.15 -4.86 16 15 C 0.02 1.16 1.85 -11.49 -0.02 1.14 16 16 H 0.03 1.65 7.21 -2.39 -0.02 1.64 16 17 C -0.52 -30.77 9.15 25.60 0.23 -30.54 16 18 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 19 C 0.01 0.66 5.45 84.65 0.46 1.12 16 20 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 21 Si 0.96 44.21 24.35 68.60 1.67 45.88 16 22 H -0.26 -11.13 6.89 99.48 0.69 -10.44 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.24 -10.02 6.53 99.48 0.65 -9.37 16 25 C 0.11 4.94 4.10 86.33 0.35 5.29 16 26 N -0.47 -12.84 3.24 -540.34 -1.75 -14.59 16 27 C 0.06 0.83 8.26 127.77 1.06 1.89 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.79 6.68 -2.39 -0.02 1.77 16 30 H 0.12 1.19 8.12 -2.39 -0.02 1.17 16 31 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.16 1.92 5.62 -2.91 -0.02 1.91 16 34 H 0.11 2.11 5.24 -2.39 -0.01 2.10 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.88 3.34 -2.39 -0.01 1.87 16 39 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 2.73 7.92 -2.39 -0.02 2.71 16 43 H 0.11 1.04 8.00 -2.38 -0.02 1.02 16 44 H 0.11 1.46 7.24 -2.39 -0.02 1.45 16 45 H 0.12 1.25 6.00 -2.39 -0.01 1.23 16 Total: -1.00 -81.41 347.47 3.83 -77.58 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.93 Total: 12.87 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 8.85 Total: -3.62 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -7.61 Total: -132.71 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.67 Total: 45.88 kcal Total: -81.41 3.83 -77.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597279275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.912 kcal (2) G-P(sol) polarization free energy of solvation -81.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds