Wall clock time and date at job start Tue Mar 31 2020 11:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48502 * 109.47256 * 276.09456 * 3 2 1 5 5 H 1.48494 * 109.47291 * 36.10018 * 3 2 1 6 6 H 1.48509 * 109.47147 * 156.09657 * 3 2 1 7 7 C 1.37885 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00070 * 2.83058 * 7 2 1 9 9 C 1.50695 * 119.99989 * 182.83278 * 7 2 1 10 10 C 1.53008 * 115.54877 * 322.20272 * 9 7 2 11 11 N 1.46904 * 109.47044 * 147.86206 * 10 9 7 12 12 C 1.46907 * 110.99694 * 60.78152 * 11 10 9 13 13 C 1.53005 * 109.46764 * 67.23902 * 12 11 10 14 14 C 1.53000 * 109.46602 * 185.01124 * 13 12 11 15 15 O 1.42902 * 109.46874 * 180.02562 * 14 13 12 16 16 C 1.46894 * 110.99853 * 184.73418 * 11 10 9 17 17 H 1.09005 * 110.35033 * 291.03324 * 16 11 10 18 18 C 1.54348 * 110.30301 * 168.90750 * 16 11 10 19 19 C 1.54342 * 102.39229 * 267.42787 * 18 16 11 20 20 C 1.51371 * 105.16719 * 333.64570 * 19 18 16 21 21 C 1.38504 * 130.38920 * 197.21515 * 20 19 18 22 22 C 1.38102 * 120.21298 * 179.97438 * 21 20 19 23 23 C 1.38251 * 119.93351 * 359.72731 * 22 21 20 24 24 C 1.38106 * 119.93969 * 0.54092 * 23 22 21 25 25 C 1.38214 * 109.76115 * 17.19593 * 20 19 18 26 26 C 1.53001 * 117.51970 * 107.90333 * 9 7 2 27 27 C 1.53001 * 117.50135 * 176.53548 * 9 7 2 28 28 H 0.97000 * 119.99688 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47006 * 27.86349 * 10 9 7 30 30 H 1.08998 * 109.46917 * 267.86269 * 10 9 7 31 31 H 1.08994 * 109.47226 * 187.23822 * 12 11 10 32 32 H 1.09002 * 109.47055 * 307.24379 * 12 11 10 33 33 H 1.08994 * 109.47311 * 305.01182 * 13 12 11 34 34 H 1.08998 * 109.46802 * 65.01441 * 13 12 11 35 35 H 1.09000 * 109.47758 * 299.99890 * 14 13 12 36 36 H 1.08998 * 109.47283 * 60.00611 * 14 13 12 37 37 H 0.96698 * 114.00122 * 180.02562 * 15 14 13 38 38 H 1.08996 * 110.82392 * 149.19746 * 18 16 11 39 39 H 1.09004 * 110.98869 * 25.72655 * 18 16 11 40 40 H 1.09003 * 110.30081 * 214.73165 * 19 18 16 41 41 H 1.08996 * 110.38902 * 92.61075 * 19 18 16 42 42 H 1.07998 * 119.89302 * 0.02562 * 21 20 19 43 43 H 1.08003 * 120.03225 * 180.02562 * 22 21 20 44 44 H 1.08001 * 120.03298 * 180.28376 * 23 22 21 45 45 H 1.07997 * 119.89357 * 179.74633 * 24 23 22 46 46 H 1.08998 * 117.50055 * 214.97047 * 26 9 7 47 47 H 1.09000 * 117.49565 * 359.97438 * 26 9 7 48 48 H 1.08997 * 117.49686 * 359.97212 * 27 9 7 49 49 H 1.08995 * 117.50066 * 144.97236 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3680 2.1207 -1.3922 5 1 1.5171 2.6120 0.8249 6 1 3.6052 1.4063 0.5673 7 6 2.0045 -1.1942 0.0005 8 1 1.4654 -2.1289 -0.0452 9 6 3.5100 -1.1950 0.0650 10 6 4.2050 -0.0844 -0.7253 11 7 5.4464 0.3007 -0.0405 12 6 6.3701 -0.8377 0.0543 13 6 6.8590 -1.2157 -1.3454 14 6 7.7211 -2.4769 -1.2610 15 8 8.1783 -2.8296 -2.5682 16 6 6.0844 1.4420 -0.7098 17 1 6.4703 1.1427 -1.6844 18 6 7.2223 2.0086 0.1657 19 6 6.5031 3.1120 0.9703 20 6 5.3386 3.5395 0.1029 21 6 4.5520 4.6784 0.1540 22 6 3.5289 4.8577 -0.7561 23 6 3.2920 3.9006 -1.7252 24 6 4.0716 2.7618 -1.7744 25 6 5.0980 2.5800 -0.8624 26 6 4.1613 -1.6438 1.3748 27 6 4.2130 -2.5517 0.1443 28 1 -0.4850 0.8401 -0.0004 29 1 3.5449 0.7802 -0.7941 30 1 4.4392 -0.4435 -1.7274 31 1 7.2228 -0.5630 0.6751 32 1 5.8544 -1.6879 0.5009 33 1 6.0015 -1.4042 -1.9912 34 1 7.4507 -0.3979 -1.7566 35 1 8.5787 -2.2884 -0.6152 36 1 7.1294 -3.2947 -0.8498 37 1 8.7318 -3.6221 -2.5908 38 1 8.0128 2.4330 -0.4532 39 1 7.6220 1.2425 0.8303 40 1 7.1748 3.9529 1.1429 41 1 6.1423 2.7158 1.9195 42 1 4.7399 5.4289 0.9075 43 1 2.9176 5.7471 -0.7138 44 1 2.4952 4.0415 -2.4406 45 1 3.8833 2.0127 -2.5292 46 1 5.0848 -1.1478 1.6735 47 1 3.5006 -1.9381 2.1903 48 1 3.5865 -3.4435 0.1503 49 1 5.1703 -2.6531 -0.3668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602780471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:17 Heat of formation + Delta-G solvation = 102.645214 kcal Electronic energy + Delta-G solvation = -28808.514214 eV Core-core repulsion = 25319.190098 eV Total energy + Delta-G solvation = -3489.324117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79451 -38.91007 -36.86872 -35.95983 -33.89478 -32.33030 -31.81922 -30.37542 -28.96834 -27.52333 -26.51291 -24.90457 -23.18517 -22.47258 -21.75063 -21.18022 -20.69727 -19.37074 -19.12553 -17.36853 -16.93046 -16.26870 -16.15391 -15.63722 -15.22413 -15.03454 -14.62458 -14.36680 -14.14194 -13.75326 -13.27726 -13.16470 -13.03418 -12.96867 -12.90236 -12.20430 -11.97992 -11.89149 -11.72304 -11.39654 -11.20323 -11.09938 -10.96274 -10.85398 -10.65970 -10.45089 -10.35111 -10.30815 -9.99408 -9.78073 -9.52656 -9.22414 -8.91607 -8.62781 -8.44976 -8.05404 -7.74201 -7.70120 -5.99035 -4.04526 1.59718 1.63988 3.31796 3.60036 3.69006 3.97106 4.17962 4.38684 4.56140 4.66257 4.70592 4.92561 5.00313 5.18890 5.20531 5.22526 5.29366 5.30411 5.39352 5.42394 5.50912 5.55732 5.64886 5.73282 5.76793 5.81431 5.88292 5.91036 5.95555 6.01498 6.03009 6.09362 6.17777 6.24150 6.30303 6.36620 6.39029 6.42228 6.58699 6.65566 6.71506 6.76960 6.90935 6.92564 7.13629 7.22626 7.25480 7.50887 7.52966 7.60600 7.83256 8.55993 8.95057 9.57654 11.05824 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.007696 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.649175 B = 3637.175154 C = 5335.342651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.065 3.935 3 Si 0.831 3.169 4 H -0.234 1.234 5 H -0.314 1.314 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.073 0.927 9 C 0.024 3.976 10 C 0.078 3.922 11 N -0.505 5.505 12 C 0.004 3.996 13 C -0.161 4.161 14 C 0.080 3.920 15 O -0.577 6.577 16 C 0.117 3.883 17 H 0.051 0.949 18 C -0.110 4.110 19 C -0.072 4.072 20 C -0.079 4.079 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.082 4.082 25 C -0.099 4.099 26 C -0.207 4.207 27 C -0.219 4.219 28 H 0.263 0.737 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.375 0.625 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.840 4.442 -1.113 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.137 4.137 3 Si 0.661 3.339 4 H -0.162 1.162 5 H -0.243 1.243 6 H -0.122 1.122 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.023 3.977 10 C -0.048 4.048 11 N -0.228 5.228 12 C -0.123 4.123 13 C -0.200 4.200 14 C 0.002 3.998 15 O -0.381 6.381 16 C 0.009 3.991 17 H 0.069 0.931 18 C -0.148 4.148 19 C -0.109 4.109 20 C -0.080 4.080 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.100 4.100 25 C -0.100 4.100 26 C -0.245 4.245 27 C -0.255 4.255 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.221 0.779 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.202 5.218 -0.782 17.040 hybrid contribution 0.392 0.007 -0.688 0.791 sum 16.594 5.225 -1.469 17.459 Atomic orbital electron populations 1.69927 1.06771 1.27176 1.49602 1.25236 0.94936 1.00186 0.93373 0.88630 0.82973 0.81792 0.80499 1.16243 1.24343 1.12185 1.20374 0.86632 0.94534 1.50955 0.90861 1.19219 0.94216 0.89524 0.94722 1.22196 0.89519 0.98377 0.94698 1.62489 1.04380 1.04511 1.51396 1.23426 0.96885 0.97058 0.94914 1.22275 1.00104 0.96775 1.00895 1.22150 0.96718 0.97152 0.83783 1.86505 1.71995 1.49633 1.30010 1.21094 0.92194 0.89772 0.96048 0.93087 1.22309 0.96178 0.97992 0.98339 1.20945 0.93950 0.97628 0.98379 1.20483 0.97272 0.94104 0.96116 1.20498 0.96258 0.97356 0.99750 1.20929 0.97935 0.99366 0.95858 1.20977 0.99302 0.94287 0.99602 1.20552 0.93329 0.97109 0.99020 1.20225 0.97128 0.96151 0.96451 1.23485 1.03130 1.04914 0.92954 1.23281 1.01412 0.96396 1.04453 0.92809 0.90695 0.95286 0.91288 0.84832 0.90629 0.91610 0.93919 0.93319 0.77862 0.91256 0.89973 0.91397 0.89778 0.86567 0.86180 0.86103 0.86478 0.88575 0.90500 0.90367 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.83 20.62 19.56 -169.99 -3.32 17.30 16 4 H -0.23 -5.29 3.35 56.52 0.19 -5.10 16 5 H -0.31 -8.51 7.11 56.52 0.40 -8.11 16 6 H -0.20 -4.68 3.74 56.52 0.21 -4.47 16 7 C -0.49 -13.98 9.64 -34.44 -0.33 -14.31 16 8 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.02 0.57 2.03 -155.66 -0.32 0.25 16 10 C 0.08 1.63 3.16 -3.82 -0.01 1.62 16 11 N -0.51 -8.80 3.23 -226.78 -0.73 -9.53 16 12 C 0.00 0.06 3.36 -3.82 -0.01 0.05 16 13 C -0.16 -2.27 4.01 -26.73 -0.11 -2.38 16 14 C 0.08 0.95 6.97 37.16 0.26 1.21 16 15 O -0.58 -7.03 13.66 -35.23 -0.48 -7.52 16 16 C 0.12 1.83 2.25 -67.83 -0.15 1.68 16 17 H 0.05 0.79 6.15 -51.93 -0.32 0.47 16 18 C -0.11 -1.40 6.59 -25.32 -0.17 -1.57 16 19 C -0.07 -0.96 6.77 -26.85 -0.18 -1.14 16 20 C -0.08 -1.27 5.84 -104.20 -0.61 -1.88 16 21 C -0.12 -1.85 10.04 -39.53 -0.40 -2.25 16 22 C -0.12 -1.92 9.66 -39.63 -0.38 -2.30 16 23 C -0.12 -2.10 7.26 -39.62 -0.29 -2.39 16 24 C -0.08 -1.47 5.34 -39.53 -0.21 -1.68 16 25 C -0.10 -1.71 3.25 -104.21 -0.34 -2.05 16 26 C -0.21 -4.30 8.87 -26.73 -0.24 -4.53 16 27 C -0.22 -4.36 9.05 -26.73 -0.24 -4.60 16 28 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 29 H 0.08 1.67 0.40 -51.93 -0.02 1.65 16 30 H 0.03 0.60 6.38 -51.93 -0.33 0.27 16 31 H 0.07 0.88 6.46 -51.93 -0.34 0.54 16 32 H 0.13 2.10 2.29 -51.93 -0.12 1.98 16 33 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 34 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.56 7.26 -51.93 -0.38 0.18 16 37 H 0.38 2.69 9.12 45.56 0.42 3.10 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.97 6.27 -51.93 -0.33 0.64 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 45 H 0.12 2.11 7.55 -52.49 -0.40 1.71 16 46 H 0.10 1.80 5.14 -51.93 -0.27 1.53 16 47 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 48 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 49 H 0.08 1.44 3.90 -51.93 -0.20 1.24 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -33.30 337.18 -9.21 -42.51 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -6.70 Total: 13.99 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -3.82 Total: -34.47 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.04 Total: -36.90 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.48 Total: -7.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -3.32 Total: 17.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.30 -9.21 -42.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.156 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds