Wall clock time and date at job start Tue Mar 31 2020 11:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48502 * 109.47256 * 276.09456 * 3 2 1 5 5 H 1.48494 * 109.47291 * 36.10018 * 3 2 1 6 6 H 1.48509 * 109.47147 * 156.09657 * 3 2 1 7 7 C 1.37885 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00070 * 2.83058 * 7 2 1 9 9 C 1.50695 * 119.99989 * 182.83278 * 7 2 1 10 10 C 1.53008 * 115.54877 * 322.20272 * 9 7 2 11 11 N 1.46904 * 109.47044 * 147.86206 * 10 9 7 12 12 C 1.46907 * 110.99694 * 60.78152 * 11 10 9 13 13 C 1.53005 * 109.46764 * 67.23902 * 12 11 10 14 14 C 1.53000 * 109.46602 * 185.01124 * 13 12 11 15 15 O 1.42902 * 109.46874 * 180.02562 * 14 13 12 16 16 C 1.46894 * 110.99853 * 184.73418 * 11 10 9 17 17 H 1.09005 * 110.35033 * 291.03324 * 16 11 10 18 18 C 1.54348 * 110.30301 * 168.90750 * 16 11 10 19 19 C 1.54342 * 102.39229 * 267.42787 * 18 16 11 20 20 C 1.51371 * 105.16719 * 333.64570 * 19 18 16 21 21 C 1.38504 * 130.38920 * 197.21515 * 20 19 18 22 22 C 1.38102 * 120.21298 * 179.97438 * 21 20 19 23 23 C 1.38251 * 119.93351 * 359.72731 * 22 21 20 24 24 C 1.38106 * 119.93969 * 0.54092 * 23 22 21 25 25 C 1.38214 * 109.76115 * 17.19593 * 20 19 18 26 26 C 1.53001 * 117.51970 * 107.90333 * 9 7 2 27 27 C 1.53001 * 117.50135 * 176.53548 * 9 7 2 28 28 H 0.97000 * 119.99688 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47006 * 27.86349 * 10 9 7 30 30 H 1.08998 * 109.46917 * 267.86269 * 10 9 7 31 31 H 1.08994 * 109.47226 * 187.23822 * 12 11 10 32 32 H 1.09002 * 109.47055 * 307.24379 * 12 11 10 33 33 H 1.08994 * 109.47311 * 305.01182 * 13 12 11 34 34 H 1.08998 * 109.46802 * 65.01441 * 13 12 11 35 35 H 1.09000 * 109.47758 * 299.99890 * 14 13 12 36 36 H 1.08998 * 109.47283 * 60.00611 * 14 13 12 37 37 H 0.96698 * 114.00122 * 180.02562 * 15 14 13 38 38 H 1.08996 * 110.82392 * 149.19746 * 18 16 11 39 39 H 1.09004 * 110.98869 * 25.72655 * 18 16 11 40 40 H 1.09003 * 110.30081 * 214.73165 * 19 18 16 41 41 H 1.08996 * 110.38902 * 92.61075 * 19 18 16 42 42 H 1.07998 * 119.89302 * 0.02562 * 21 20 19 43 43 H 1.08003 * 120.03225 * 180.02562 * 22 21 20 44 44 H 1.08001 * 120.03298 * 180.28376 * 23 22 21 45 45 H 1.07997 * 119.89357 * 179.74633 * 24 23 22 46 46 H 1.08998 * 117.50055 * 214.97047 * 26 9 7 47 47 H 1.09000 * 117.49565 * 359.97438 * 26 9 7 48 48 H 1.08997 * 117.49686 * 359.97212 * 27 9 7 49 49 H 1.08995 * 117.50066 * 144.97236 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3680 2.1207 -1.3922 5 1 1.5171 2.6120 0.8249 6 1 3.6052 1.4063 0.5673 7 6 2.0045 -1.1942 0.0005 8 1 1.4654 -2.1289 -0.0452 9 6 3.5100 -1.1950 0.0650 10 6 4.2050 -0.0844 -0.7253 11 7 5.4464 0.3007 -0.0405 12 6 6.3701 -0.8377 0.0543 13 6 6.8590 -1.2157 -1.3454 14 6 7.7211 -2.4769 -1.2610 15 8 8.1783 -2.8296 -2.5682 16 6 6.0844 1.4420 -0.7098 17 1 6.4703 1.1427 -1.6844 18 6 7.2223 2.0086 0.1657 19 6 6.5031 3.1120 0.9703 20 6 5.3386 3.5395 0.1029 21 6 4.5520 4.6784 0.1540 22 6 3.5289 4.8577 -0.7561 23 6 3.2920 3.9006 -1.7252 24 6 4.0716 2.7618 -1.7744 25 6 5.0980 2.5800 -0.8624 26 6 4.1613 -1.6438 1.3748 27 6 4.2130 -2.5517 0.1443 28 1 -0.4850 0.8401 -0.0004 29 1 3.5449 0.7802 -0.7941 30 1 4.4392 -0.4435 -1.7274 31 1 7.2228 -0.5630 0.6751 32 1 5.8544 -1.6879 0.5009 33 1 6.0015 -1.4042 -1.9912 34 1 7.4507 -0.3979 -1.7566 35 1 8.5787 -2.2884 -0.6152 36 1 7.1294 -3.2947 -0.8498 37 1 8.7318 -3.6221 -2.5908 38 1 8.0128 2.4330 -0.4532 39 1 7.6220 1.2425 0.8303 40 1 7.1748 3.9529 1.1429 41 1 6.1423 2.7158 1.9195 42 1 4.7399 5.4289 0.9075 43 1 2.9176 5.7471 -0.7138 44 1 2.4952 4.0415 -2.4406 45 1 3.8833 2.0127 -2.5292 46 1 5.0848 -1.1478 1.6735 47 1 3.5006 -1.9381 2.1903 48 1 3.5865 -3.4435 0.1503 49 1 5.1703 -2.6531 -0.3668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602780471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:16 Heat of formation + Delta-G solvation = 78.053104 kcal Electronic energy + Delta-G solvation = -28809.580608 eV Core-core repulsion = 25319.190098 eV Total energy + Delta-G solvation = -3490.390510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06560 -40.28576 -37.85498 -37.24936 -35.24842 -34.30361 -33.17213 -31.59771 -30.15318 -29.09775 -27.76647 -26.62499 -24.40605 -23.61233 -23.14426 -22.59623 -21.92042 -21.00855 -20.50725 -18.48544 -18.32623 -18.05299 -17.47012 -16.80791 -16.41939 -16.38375 -15.98404 -15.69476 -15.46773 -15.29487 -14.71095 -14.36797 -14.35093 -14.18783 -14.08862 -13.72115 -13.57529 -13.27216 -13.10960 -12.74708 -12.56634 -12.37461 -12.25972 -12.01571 -11.94764 -11.90949 -11.72474 -11.57880 -11.53416 -11.22964 -11.02994 -10.83913 -10.72034 -10.43279 -10.14855 -9.56475 -9.21361 -9.02509 -8.24889 -6.36485 0.34257 0.41186 1.36659 1.54765 1.72683 2.43588 2.70132 2.89024 3.15863 3.37072 3.45982 3.52368 3.61533 3.98201 4.06108 4.09606 4.11937 4.14169 4.25144 4.26981 4.27666 4.41981 4.46086 4.46828 4.49553 4.59400 4.64441 4.68333 4.73277 4.82173 4.83438 4.87089 4.89286 4.96751 5.06977 5.16190 5.17015 5.20204 5.25748 5.32802 5.35979 5.45297 5.52220 5.54820 5.55692 5.68446 5.72114 6.06129 6.08804 6.25347 6.33318 6.67144 6.94185 7.29315 8.80642 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.007696 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.649175 B = 3637.175154 C = 5335.342651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.899 3.101 4 H -0.206 1.206 5 H -0.347 1.347 6 H -0.174 1.174 7 C -0.496 4.496 8 H 0.024 0.976 9 C -0.013 4.013 10 C 0.089 3.911 11 N -0.510 5.510 12 C 0.005 3.995 13 C -0.156 4.156 14 C 0.081 3.919 15 O -0.599 6.599 16 C 0.113 3.887 17 H 0.052 0.948 18 C -0.101 4.101 19 C -0.071 4.071 20 C -0.088 4.088 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.146 4.146 24 C -0.110 4.110 25 C -0.117 4.117 26 C -0.187 4.187 27 C -0.196 4.196 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.396 0.604 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.126 0.874 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.683 5.757 -0.089 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.132 1.132 5 H -0.280 1.280 6 H -0.096 1.096 7 C -0.533 4.533 8 H 0.042 0.958 9 C -0.014 4.014 10 C -0.038 4.038 11 N -0.233 5.233 12 C -0.122 4.122 13 C -0.195 4.195 14 C 0.003 3.997 15 O -0.407 6.407 16 C 0.006 3.994 17 H 0.070 0.930 18 C -0.138 4.138 19 C -0.108 4.108 20 C -0.089 4.089 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.164 4.164 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.224 4.224 27 C -0.232 4.232 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.144 0.856 45 H 0.122 0.878 46 H 0.147 0.853 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.095 6.478 0.221 22.068 hybrid contribution -1.114 -0.504 -1.030 1.599 sum 19.981 5.974 -0.810 20.871 Atomic orbital electron populations 1.70101 1.08807 1.27841 1.52427 1.26253 0.95690 1.04452 0.93192 0.87979 0.81639 0.75670 0.81934 1.13213 1.27981 1.09560 1.20670 0.90064 0.92549 1.50046 0.95759 1.19155 0.91418 0.92970 0.97834 1.21826 0.91067 0.96552 0.94349 1.62420 1.03907 1.06056 1.50926 1.23428 0.97204 0.95736 0.95802 1.22169 0.99377 0.98299 0.99677 1.22132 0.97460 0.95985 0.84102 1.86446 1.72701 1.51168 1.30422 1.21266 0.92701 0.88564 0.96899 0.93019 1.22354 0.95272 0.98050 0.98114 1.21033 0.93372 0.98869 0.97490 1.20963 0.98052 0.93788 0.96065 1.20936 0.95544 0.97879 0.99887 1.21318 0.98311 0.99795 0.95292 1.21214 0.99816 0.94715 1.00617 1.20657 0.94884 0.97560 0.99787 1.20538 0.97234 0.97321 0.96636 1.23477 1.03329 1.04119 0.91523 1.23327 1.01990 0.94185 1.03711 0.93134 0.92263 0.95785 0.87760 0.85984 0.93779 0.91222 0.91098 0.93118 0.75402 0.89053 0.88314 0.88449 0.90146 0.83663 0.83803 0.85616 0.87770 0.85278 0.92370 0.91773 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.49 13.96 21.45 0.30 -63.19 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.90 45.08 19.56 68.60 1.34 46.42 16 4 H -0.21 -9.36 3.35 99.48 0.33 -9.02 16 5 H -0.35 -19.09 7.11 99.48 0.71 -18.38 16 6 H -0.17 -7.91 3.74 99.48 0.37 -7.53 16 7 C -0.50 -29.96 9.64 25.60 0.25 -29.71 16 8 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 9 C -0.01 -0.59 2.03 -52.93 -0.11 -0.70 16 10 C 0.09 3.64 3.16 86.31 0.27 3.91 16 11 N -0.51 -16.16 3.23 -871.39 -2.81 -18.97 16 12 C 0.00 0.11 3.36 86.30 0.29 0.40 16 13 C -0.16 -3.85 4.01 30.60 0.12 -3.73 16 14 C 0.08 1.58 6.97 71.98 0.50 2.09 16 15 O -0.60 -12.71 13.66 -148.98 -2.04 -14.74 16 16 C 0.11 3.16 2.25 44.84 0.10 3.26 16 17 H 0.05 1.45 6.15 -2.38 -0.01 1.43 16 18 C -0.10 -1.99 6.59 31.51 0.21 -1.78 16 19 C -0.07 -1.52 6.77 30.52 0.21 -1.31 16 20 C -0.09 -2.51 5.84 -19.59 -0.11 -2.62 16 21 C -0.12 -3.41 10.04 22.30 0.22 -3.19 16 22 C -0.13 -3.76 9.66 22.24 0.21 -3.55 16 23 C -0.15 -4.82 7.26 22.24 0.16 -4.66 16 24 C -0.11 -3.89 5.34 22.30 0.12 -3.77 16 25 C -0.12 -3.75 3.25 -19.59 -0.06 -3.82 16 26 C -0.19 -7.48 8.87 30.60 0.27 -7.21 16 27 C -0.20 -7.62 9.05 30.60 0.28 -7.34 16 28 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 29 H 0.06 2.63 0.40 -2.39 0.00 2.63 16 30 H 0.02 1.00 6.38 -2.39 -0.02 0.99 16 31 H 0.10 1.96 6.46 -2.39 -0.02 1.95 16 32 H 0.12 3.33 2.29 -2.39 -0.01 3.33 16 33 H 0.04 1.37 6.17 -2.39 -0.01 1.36 16 34 H 0.07 1.67 6.54 -2.39 -0.02 1.66 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 0.96 7.26 -2.39 -0.02 0.95 16 37 H 0.40 4.38 9.12 -74.06 -0.68 3.71 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 1.65 6.27 -2.38 -0.01 1.64 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 45 H 0.10 3.81 7.55 -2.91 -0.02 3.79 16 46 H 0.13 4.32 5.14 -2.39 -0.01 4.31 16 47 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.12 3.79 3.90 -2.39 -0.01 3.78 16 Total: -1.00 -78.51 337.18 -0.21 -78.72 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.40 Total: 35.03 kcal Atomic # 6 Polarization: -66.67 SS G_CDS: 3.39 Total: -63.27 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.51 Total: -82.16 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -2.04 Total: -14.74 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.34 Total: 46.42 kcal Total: -78.51 -0.21 -78.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602780471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.777 kcal (2) G-P(sol) polarization free energy of solvation -78.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds