Wall clock time and date at job start Tue Mar 31 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48496 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47704 * 300.00679 * 3 2 1 6 6 H 1.48511 * 109.47065 * 60.00698 * 3 2 1 7 7 C 1.39945 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99527 * 193.31202 * 7 2 1 9 9 C 1.41394 * 120.00133 * 13.30935 * 7 2 1 10 10 C 1.40712 * 120.24320 * 28.09971 * 9 7 2 11 11 C 1.37624 * 119.74107 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.24765 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.74765 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47021 * 89.99954 * 13 12 11 15 15 C 1.46862 * 110.99706 * 63.46217 * 14 13 12 16 16 C 1.53032 * 109.55127 * 185.74140 * 15 14 13 17 17 C 1.53701 * 109.44408 * 300.89430 * 16 15 14 18 18 H 1.09005 * 109.46734 * 297.84997 * 17 16 15 19 19 O 1.42902 * 109.90147 * 177.44102 * 17 16 15 20 20 C 1.53152 * 108.80959 * 57.51405 * 17 16 15 21 21 H 1.09002 * 109.54912 * 182.22172 * 20 17 16 22 22 C 1.53022 * 109.31233 * 62.18374 * 20 17 16 23 23 C 1.52984 * 109.50421 * 180.51103 * 22 20 17 24 24 C 1.53006 * 109.47116 * 60.03528 * 23 22 20 25 25 C 1.53002 * 109.44763 * 299.95698 * 24 23 22 26 26 C 1.46838 * 111.00167 * 187.64452 * 14 13 12 27 27 H 1.08996 * 109.43651 * 294.08261 * 26 14 13 28 28 C 1.38632 * 120.50493 * 0.27556 * 12 11 10 29 29 C 1.37624 * 120.24693 * 359.44604 * 28 12 11 30 30 H 0.96994 * 120.00163 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.13182 * 359.95940 * 10 9 7 32 32 H 1.08002 * 119.87113 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47167 * 330.00213 * 13 12 11 34 34 H 1.08992 * 109.46946 * 210.00255 * 13 12 11 35 35 H 1.08999 * 109.45572 * 305.76359 * 15 14 13 36 36 H 1.09003 * 109.45434 * 65.73866 * 15 14 13 37 37 H 1.08999 * 109.49980 * 60.84049 * 16 15 14 38 38 H 1.08996 * 109.49848 * 180.94154 * 16 15 14 39 39 H 0.96701 * 113.99574 * 60.50841 * 19 17 16 40 40 H 1.08997 * 109.46905 * 60.50146 * 22 20 17 41 41 H 1.09000 * 109.46253 * 300.52025 * 22 20 17 42 42 H 1.08994 * 109.47273 * 300.03414 * 23 22 20 43 43 H 1.09002 * 109.46658 * 180.02562 * 23 22 20 44 44 H 1.08992 * 109.48005 * 59.95513 * 24 23 22 45 45 H 1.09001 * 109.47323 * 179.97438 * 24 23 22 46 46 H 1.08993 * 109.47270 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.46453 * 300.00841 * 25 24 23 48 48 H 1.07998 * 119.87400 * 179.69993 * 28 12 11 49 49 H 1.07995 * 120.12521 * 180.27084 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0080 -1.2120 -0.0005 8 1 3.0662 -1.2246 0.2148 9 6 1.3295 -2.4199 -0.2830 10 6 0.1874 -2.4158 -1.1049 11 6 -0.4647 -3.5976 -1.3734 12 6 0.0000 -4.7890 -0.8380 13 6 -0.7224 -6.0766 -1.1400 14 7 -0.1561 -6.6832 -2.3521 15 6 1.2514 -7.0499 -2.1488 16 6 1.8475 -7.5444 -3.4686 17 6 1.0497 -8.7600 -3.9668 18 1 1.1312 -9.5699 -3.2418 19 8 1.5611 -9.1935 -5.2288 20 6 -0.4197 -8.3568 -4.1209 21 1 -1.0040 -9.2214 -4.4361 22 6 -0.5335 -7.2510 -5.1724 23 6 -1.9985 -6.8360 -5.3207 24 6 -2.5201 -6.3178 -3.9789 25 6 -2.4078 -7.4236 -2.9274 26 6 -0.9496 -7.8420 -2.7807 27 1 -0.8724 -8.6311 -2.0328 28 6 1.1212 -4.8041 -0.0228 29 6 1.7925 -3.6352 0.2546 30 1 -0.4850 0.8400 0.0004 31 1 -0.1762 -1.4889 -1.5231 32 1 -1.3418 -3.5969 -2.0037 33 1 -1.7812 -5.8710 -1.2973 34 1 -0.6064 -6.7635 -0.3017 35 1 1.8073 -6.1783 -1.8033 36 1 1.3161 -7.8415 -1.4023 37 1 1.7970 -6.7484 -4.2116 38 1 2.8873 -7.8320 -3.3130 39 1 2.4890 -9.4644 -5.2051 40 1 -0.1618 -7.6193 -6.1286 41 1 0.0580 -6.3905 -4.8600 42 1 -2.5901 -7.6965 -5.6327 43 1 -2.0789 -6.0486 -6.0702 44 1 -1.9280 -5.4577 -3.6664 45 1 -3.5638 -6.0217 -4.0846 46 1 -2.7797 -7.0551 -1.9715 47 1 -2.9999 -8.2837 -3.2402 48 1 1.4716 -5.7373 0.3928 49 1 2.6683 -3.6499 0.8863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602997664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:17 Heat of formation + Delta-G solvation = -45.751669 kcal Electronic energy + Delta-G solvation = -27535.696777 eV Core-core repulsion = 24039.937689 eV Total energy + Delta-G solvation = -3495.759088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.42628 -37.71025 -36.71326 -35.32987 -33.67764 -32.54764 -30.53797 -29.90704 -29.28361 -28.80119 -26.50157 -24.30704 -23.53640 -22.47371 -21.64769 -20.99996 -20.45653 -19.65395 -18.14249 -17.26660 -17.10820 -15.87400 -15.50269 -15.32589 -15.18828 -14.81130 -14.11015 -13.98719 -13.66619 -13.52716 -13.36455 -13.17610 -12.82393 -12.61394 -12.23617 -12.11720 -12.02199 -11.89114 -11.63550 -11.51088 -11.31754 -11.12285 -11.07335 -10.97309 -10.77308 -10.74784 -10.41099 -10.34632 -10.32090 -9.83412 -9.74235 -9.68673 -9.52028 -9.32185 -9.16375 -7.87333 -7.42221 -7.22682 -6.70738 -4.34206 2.74658 3.06951 3.09090 3.13936 3.16722 3.95553 4.11026 4.23641 4.66237 4.72679 4.83365 4.92087 5.12020 5.13067 5.29304 5.39092 5.46215 5.55645 5.60014 5.66198 5.67718 5.71563 5.76275 5.79440 5.88863 5.97065 6.00288 6.02421 6.09832 6.25285 6.27172 6.34980 6.36774 6.39167 6.43750 6.49447 6.51357 6.59857 6.77896 6.97196 7.10455 7.30284 7.35609 7.49847 7.51327 7.58213 7.64144 7.88894 8.08147 8.15296 8.32601 8.67266 8.92420 8.99510 10.24138 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.003391 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.782463 B = 8254.644653 C = 8634.156223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.160 4.160 11 C -0.080 4.080 12 C -0.200 4.200 13 C 0.114 3.886 14 N -0.518 5.518 15 C 0.058 3.942 16 C -0.148 4.148 17 C 0.107 3.893 18 H 0.046 0.954 19 O -0.565 6.565 20 C -0.066 4.066 21 H 0.070 0.930 22 C -0.102 4.102 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.113 4.113 26 C 0.090 3.910 27 H 0.032 0.968 28 C -0.089 4.089 29 C -0.224 4.224 30 H 0.278 0.722 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.020 0.980 35 H 0.094 0.906 36 H 0.022 0.978 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.373 0.627 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 -13.861 -7.040 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.180 4.180 11 C -0.099 4.099 12 C -0.202 4.202 13 C -0.011 4.011 14 N -0.243 5.243 15 C -0.070 4.070 16 C -0.186 4.186 17 C 0.048 3.952 18 H 0.064 0.936 19 O -0.370 6.370 20 C -0.085 4.085 21 H 0.088 0.912 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.150 4.150 26 C -0.018 4.018 27 H 0.050 0.950 28 C -0.108 4.108 29 C -0.243 4.243 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.038 0.962 35 H 0.113 0.887 36 H 0.040 0.960 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.220 0.780 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.525 -13.217 -7.583 15.446 hybrid contribution 0.998 -0.005 1.047 1.447 sum -1.527 -13.222 -6.536 14.828 Atomic orbital electron populations 1.69811 1.07435 1.28888 1.36440 1.25868 0.94764 1.01130 0.92395 0.86281 0.80887 0.81153 0.78490 1.18523 1.19781 1.20065 1.19605 0.96554 0.90847 1.42546 0.90631 1.17619 0.91280 0.91946 0.88163 1.21311 0.98992 0.96559 1.01125 1.20482 0.98311 0.92574 0.98559 1.18852 1.00773 0.92964 1.07604 1.20847 0.98200 0.93557 0.88544 1.62040 1.01234 1.26873 1.34141 1.22041 0.90158 0.99982 0.94845 1.22437 0.98377 0.98882 0.98927 1.21995 0.94286 0.94412 0.84479 0.93611 1.86506 1.30877 1.87212 1.32411 1.21095 0.93303 0.98330 0.95755 0.91186 1.21416 0.96476 0.98516 0.97501 1.21473 0.96465 0.99929 0.97253 1.21449 1.00180 0.99119 0.94424 1.21529 0.94643 0.98903 0.99963 1.21414 0.93829 0.91715 0.94877 0.95049 1.20351 0.95708 0.96099 0.98593 1.20966 1.03305 0.93413 1.06637 0.91071 0.86609 0.89520 0.90815 0.96229 0.88740 0.96015 0.89876 0.91995 0.78012 0.92367 0.90181 0.93150 0.92452 0.89968 0.93052 0.91423 0.92285 0.90035 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 10.94 55.55 0.61 -20.11 16 2 C 0.08 1.89 5.21 -17.34 -0.09 1.80 16 3 Si 0.91 18.77 29.58 -169.99 -5.03 13.74 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.47 -12.34 9.06 -37.74 -0.34 -12.68 16 8 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 9 C 0.11 2.96 5.55 -106.83 -0.59 2.37 16 10 C -0.16 -4.11 8.67 -38.87 -0.34 -4.44 16 11 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 12 C -0.20 -4.14 4.83 -104.33 -0.50 -4.64 16 13 C 0.11 1.93 4.66 -4.97 -0.02 1.91 16 14 N -0.52 -7.79 3.01 -228.49 -0.69 -8.47 16 15 C 0.06 0.85 5.11 -3.83 -0.02 0.83 16 16 C -0.15 -1.87 5.40 -26.35 -0.14 -2.01 16 17 C 0.11 1.25 3.25 -26.29 -0.09 1.17 16 18 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 19 O -0.57 -6.32 12.59 -35.23 -0.44 -6.76 16 20 C -0.07 -0.82 2.26 -90.51 -0.20 -1.02 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 22 C -0.10 -1.32 4.58 -26.73 -0.12 -1.44 16 23 C -0.11 -1.37 5.92 -26.74 -0.16 -1.53 16 24 C -0.11 -1.45 5.72 -26.73 -0.15 -1.60 16 25 C -0.11 -1.37 4.89 -27.03 -0.13 -1.50 16 26 C 0.09 1.17 2.03 -68.03 -0.14 1.03 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 C -0.09 -1.90 7.78 -39.66 -0.31 -2.21 16 29 C -0.22 -5.38 9.80 -38.87 -0.38 -5.76 16 30 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 31 H 0.12 3.10 6.27 -52.49 -0.33 2.77 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.07 1.20 5.64 -51.93 -0.29 0.91 16 34 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.09 1.62 5.73 -51.93 -0.30 1.33 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 1.18 6.53 -51.93 -0.34 0.84 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.37 2.66 9.09 45.56 0.41 3.08 16 40 H 0.06 0.77 7.64 -51.93 -0.40 0.37 16 41 H 0.08 1.20 5.94 -51.93 -0.31 0.89 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.24 7.49 -51.93 -0.39 0.86 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.84 6.11 -51.93 -0.32 0.52 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 1.57 8.00 -52.49 -0.42 1.15 16 49 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -27.09 363.87 -11.48 -38.57 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -7.29 Total: 9.49 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -4.12 Total: -31.94 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: -0.08 Total: -28.58 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.44 Total: -6.76 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.09 -11.48 -38.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602997664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.181 kcal (2) G-P(sol) polarization free energy of solvation -27.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds