Wall clock time and date at job start Tue Mar 31 2020 12:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48496 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47704 * 300.00679 * 3 2 1 6 6 H 1.48511 * 109.47065 * 60.00698 * 3 2 1 7 7 C 1.39945 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99527 * 193.31202 * 7 2 1 9 9 C 1.41394 * 120.00133 * 13.30935 * 7 2 1 10 10 C 1.40712 * 120.24320 * 28.09971 * 9 7 2 11 11 C 1.37624 * 119.74107 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.24765 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.74765 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47021 * 89.99954 * 13 12 11 15 15 C 1.46862 * 110.99706 * 63.46217 * 14 13 12 16 16 C 1.53032 * 109.55127 * 185.74140 * 15 14 13 17 17 C 1.53701 * 109.44408 * 300.89430 * 16 15 14 18 18 H 1.09005 * 109.46734 * 297.84997 * 17 16 15 19 19 O 1.42902 * 109.90147 * 177.44102 * 17 16 15 20 20 C 1.53152 * 108.80959 * 57.51405 * 17 16 15 21 21 H 1.09002 * 109.54912 * 182.22172 * 20 17 16 22 22 C 1.53022 * 109.31233 * 62.18374 * 20 17 16 23 23 C 1.52984 * 109.50421 * 180.51103 * 22 20 17 24 24 C 1.53006 * 109.47116 * 60.03528 * 23 22 20 25 25 C 1.53002 * 109.44763 * 299.95698 * 24 23 22 26 26 C 1.46838 * 111.00167 * 187.64452 * 14 13 12 27 27 H 1.08996 * 109.43651 * 294.08261 * 26 14 13 28 28 C 1.38632 * 120.50493 * 0.27556 * 12 11 10 29 29 C 1.37624 * 120.24693 * 359.44604 * 28 12 11 30 30 H 0.96994 * 120.00163 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.13182 * 359.95940 * 10 9 7 32 32 H 1.08002 * 119.87113 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47167 * 330.00213 * 13 12 11 34 34 H 1.08992 * 109.46946 * 210.00255 * 13 12 11 35 35 H 1.08999 * 109.45572 * 305.76359 * 15 14 13 36 36 H 1.09003 * 109.45434 * 65.73866 * 15 14 13 37 37 H 1.08999 * 109.49980 * 60.84049 * 16 15 14 38 38 H 1.08996 * 109.49848 * 180.94154 * 16 15 14 39 39 H 0.96701 * 113.99574 * 60.50841 * 19 17 16 40 40 H 1.08997 * 109.46905 * 60.50146 * 22 20 17 41 41 H 1.09000 * 109.46253 * 300.52025 * 22 20 17 42 42 H 1.08994 * 109.47273 * 300.03414 * 23 22 20 43 43 H 1.09002 * 109.46658 * 180.02562 * 23 22 20 44 44 H 1.08992 * 109.48005 * 59.95513 * 24 23 22 45 45 H 1.09001 * 109.47323 * 179.97438 * 24 23 22 46 46 H 1.08993 * 109.47270 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.46453 * 300.00841 * 25 24 23 48 48 H 1.07998 * 119.87400 * 179.69993 * 28 12 11 49 49 H 1.07995 * 120.12521 * 180.27084 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0080 -1.2120 -0.0005 8 1 3.0662 -1.2246 0.2148 9 6 1.3295 -2.4199 -0.2830 10 6 0.1874 -2.4158 -1.1049 11 6 -0.4647 -3.5976 -1.3734 12 6 0.0000 -4.7890 -0.8380 13 6 -0.7224 -6.0766 -1.1400 14 7 -0.1561 -6.6832 -2.3521 15 6 1.2514 -7.0499 -2.1488 16 6 1.8475 -7.5444 -3.4686 17 6 1.0497 -8.7600 -3.9668 18 1 1.1312 -9.5699 -3.2418 19 8 1.5611 -9.1935 -5.2288 20 6 -0.4197 -8.3568 -4.1209 21 1 -1.0040 -9.2214 -4.4361 22 6 -0.5335 -7.2510 -5.1724 23 6 -1.9985 -6.8360 -5.3207 24 6 -2.5201 -6.3178 -3.9789 25 6 -2.4078 -7.4236 -2.9274 26 6 -0.9496 -7.8420 -2.7807 27 1 -0.8724 -8.6311 -2.0328 28 6 1.1212 -4.8041 -0.0228 29 6 1.7925 -3.6352 0.2546 30 1 -0.4850 0.8400 0.0004 31 1 -0.1762 -1.4889 -1.5231 32 1 -1.3418 -3.5969 -2.0037 33 1 -1.7812 -5.8710 -1.2973 34 1 -0.6064 -6.7635 -0.3017 35 1 1.8073 -6.1783 -1.8033 36 1 1.3161 -7.8415 -1.4023 37 1 1.7970 -6.7484 -4.2116 38 1 2.8873 -7.8320 -3.3130 39 1 2.4890 -9.4644 -5.2051 40 1 -0.1618 -7.6193 -6.1286 41 1 0.0580 -6.3905 -4.8600 42 1 -2.5901 -7.6965 -5.6327 43 1 -2.0789 -6.0486 -6.0702 44 1 -1.9280 -5.4577 -3.6664 45 1 -3.5638 -6.0217 -4.0846 46 1 -2.7797 -7.0551 -1.9715 47 1 -2.9999 -8.2837 -3.2402 48 1 1.4716 -5.7373 0.3928 49 1 2.6683 -3.6499 0.8863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602997664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:16 Heat of formation + Delta-G solvation = -59.873554 kcal Electronic energy + Delta-G solvation = -27536.309148 eV Core-core repulsion = 24039.937689 eV Total energy + Delta-G solvation = -3496.371459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50045 -39.42405 -37.68672 -36.60435 -35.37158 -33.71334 -32.01135 -31.26335 -30.87155 -30.06762 -28.07799 -25.71112 -24.71021 -23.64065 -22.87106 -22.75241 -21.65547 -21.17984 -19.26262 -19.09749 -17.99153 -17.18828 -16.91961 -16.65614 -16.35618 -15.97623 -15.71770 -15.39163 -15.15637 -14.87219 -14.48631 -14.33984 -14.19303 -13.84968 -13.74462 -13.50277 -13.38459 -13.16836 -13.05767 -12.80853 -12.72026 -12.64074 -12.43113 -12.34955 -12.05892 -11.99504 -11.77380 -11.69644 -11.40953 -11.34220 -11.15861 -11.03258 -10.80631 -10.72460 -10.61756 -9.29566 -9.19917 -8.94651 -8.58011 -6.31803 0.97725 1.17918 1.37761 1.49527 1.52288 2.22103 2.71309 3.13203 3.29868 3.70131 3.78923 3.84489 3.94820 4.11715 4.15141 4.26249 4.32134 4.37184 4.42120 4.46998 4.55002 4.59404 4.63810 4.66946 4.71061 4.72665 4.77620 4.88612 4.94463 4.98802 5.06053 5.08210 5.14656 5.18358 5.22816 5.25494 5.40907 5.41346 5.44403 5.49494 5.51205 5.54310 5.74261 5.75655 5.98307 6.13872 6.21387 6.35872 6.41136 6.43969 6.75363 6.91922 6.98426 7.07746 8.39203 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.003391 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.782463 B = 8254.644653 C = 8634.156223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.034 3.966 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.079 3.921 10 C -0.183 4.183 11 C -0.085 4.085 12 C -0.182 4.182 13 C 0.121 3.879 14 N -0.526 5.526 15 C 0.058 3.942 16 C -0.142 4.142 17 C 0.114 3.886 18 H 0.060 0.940 19 O -0.575 6.575 20 C -0.066 4.066 21 H 0.082 0.918 22 C -0.096 4.096 23 C -0.111 4.111 24 C -0.112 4.112 25 C -0.112 4.112 26 C 0.092 3.908 27 H 0.042 0.958 28 C -0.085 4.085 29 C -0.239 4.239 30 H 0.285 0.715 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.391 0.609 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -16.170 -7.466 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.077 3.923 10 C -0.203 4.203 11 C -0.104 4.104 12 C -0.184 4.184 13 C -0.005 4.005 14 N -0.251 5.251 15 C -0.070 4.070 16 C -0.180 4.180 17 C 0.055 3.945 18 H 0.078 0.922 19 O -0.383 6.383 20 C -0.085 4.085 21 H 0.100 0.900 22 C -0.134 4.134 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.016 4.016 27 H 0.059 0.941 28 C -0.103 4.103 29 C -0.258 4.258 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.241 0.759 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.128 0.872 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.920 -15.552 -8.016 17.738 hybrid contribution 1.095 0.534 1.118 1.653 sum -1.826 -15.018 -6.897 16.626 Atomic orbital electron populations 1.69873 1.08810 1.30103 1.37261 1.26686 0.95547 1.04271 0.91441 0.85189 0.79320 0.76495 0.78863 1.18335 1.19016 1.19081 1.19827 0.96614 0.92204 1.44921 0.91116 1.17933 0.92158 0.92999 0.89204 1.21240 0.99909 0.96864 1.02292 1.20685 0.98554 0.92485 0.98666 1.19269 0.99810 0.94129 1.05173 1.20740 0.98105 0.91800 0.89861 1.61929 1.01712 1.28524 1.32957 1.21993 0.89645 0.99094 0.96254 1.22371 0.99581 0.98833 0.97218 1.21887 0.93567 0.94099 0.84975 0.92205 1.86469 1.32592 1.87153 1.32110 1.21108 0.94145 0.98237 0.94962 0.90002 1.21314 0.96659 0.97841 0.97539 1.21458 0.96020 1.00475 0.96906 1.21395 1.00223 0.98385 0.94966 1.21544 0.94367 0.99375 0.99613 1.21479 0.93903 0.90895 0.95333 0.94064 1.20626 0.95344 0.96293 0.98062 1.21163 1.03886 0.93803 1.06962 0.90442 0.88739 0.88165 0.90007 0.95134 0.91659 0.94829 0.91970 0.90245 0.75925 0.92734 0.92740 0.91496 0.92694 0.92923 0.92057 0.91639 0.90115 0.87196 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.88 10.94 21.83 0.24 -44.64 16 2 C 0.03 1.76 5.21 85.26 0.44 2.21 16 3 Si 0.98 39.47 29.58 68.60 2.03 41.49 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.51 -28.08 9.06 23.46 0.21 -27.86 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 C 0.08 4.36 5.55 -21.29 -0.12 4.24 16 10 C -0.18 -9.83 8.67 22.73 0.20 -9.64 16 11 C -0.09 -3.93 9.67 22.22 0.21 -3.72 16 12 C -0.18 -7.45 4.83 -19.67 -0.10 -7.54 16 13 C 0.12 3.86 4.66 85.56 0.40 4.26 16 14 N -0.53 -14.91 3.01 -876.81 -2.64 -17.54 16 15 C 0.06 1.61 5.11 86.32 0.44 2.05 16 16 C -0.14 -3.33 5.40 30.84 0.17 -3.17 16 17 C 0.11 2.33 3.25 30.88 0.10 2.43 16 18 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 19 O -0.58 -11.29 12.59 -148.98 -1.88 -13.16 16 20 C -0.07 -1.44 2.26 -10.73 -0.02 -1.46 16 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 22 C -0.10 -2.35 4.58 30.60 0.14 -2.21 16 23 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 24 C -0.11 -2.65 5.72 30.60 0.17 -2.47 16 25 C -0.11 -2.37 4.89 30.40 0.15 -2.23 16 26 C 0.09 2.12 2.03 44.74 0.09 2.21 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 C -0.08 -3.60 7.78 22.22 0.17 -3.42 16 29 C -0.24 -11.78 9.80 22.73 0.22 -11.55 16 30 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 31 H 0.09 5.38 6.27 -2.91 -0.02 5.36 16 32 H 0.10 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.08 2.50 5.64 -2.39 -0.01 2.48 16 34 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.06 2.19 5.73 -2.39 -0.01 2.18 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.73 6.53 -2.39 -0.02 1.72 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.39 4.45 9.09 -74.06 -0.67 3.78 16 40 H 0.05 1.36 7.64 -2.39 -0.02 1.35 16 41 H 0.05 1.62 5.94 -2.39 -0.01 1.61 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.56 7.49 -2.39 -0.02 1.54 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.43 6.11 -2.39 -0.01 1.42 16 47 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.11 4.01 8.00 -2.91 -0.02 3.99 16 49 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -60.75 363.87 1.09 -59.66 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.26 Total: 34.36 kcal Atomic # 6 Polarization: -63.24 SS G_CDS: 3.07 Total: -60.17 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -2.40 Total: -62.18 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.88 Total: -13.16 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Total: -60.75 1.09 -59.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602997664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.214 kcal (2) G-P(sol) polarization free energy of solvation -60.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds