Wall clock time and date at job start Tue Mar 31 2020 10:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.71288 * 2 1 4 4 C 1.54167 * 110.65660 * 123.06433 * 2 1 3 5 5 N 1.46936 * 104.02284 * 118.45273 * 4 2 1 6 6 C 1.29347 * 110.09562 * 359.97438 * 5 4 2 7 7 N 1.37601 * 122.88055 * 180.02562 * 6 5 4 8 8 N 1.40097 * 120.00155 * 359.96853 * 7 6 5 9 9 C 1.29781 * 119.99824 * 180.02562 * 8 7 6 10 10 C 1.47424 * 120.00168 * 180.02562 * 9 8 7 11 11 C 1.39765 * 120.07751 * 359.72465 * 10 9 8 12 12 C 1.37760 * 119.91717 * 179.69944 * 11 10 9 13 13 C 1.39079 * 120.08002 * 0.60109 * 12 11 10 14 14 N 1.39510 * 119.91797 * 179.69994 * 13 12 11 15 15 C 1.46502 * 120.00077 * 179.97438 * 14 13 12 16 16 C 1.46505 * 120.00208 * 359.97438 * 14 13 12 17 17 C 1.50702 * 109.46748 * 90.00173 * 16 14 13 18 18 H 1.07996 * 120.00456 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99687 * 180.02562 * 17 16 14 20 20 N 1.31515 * 120.00261 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00117 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46612 * 90.00069 * 21 19 17 23 23 H 1.48492 * 109.47151 * 209.99798 * 21 19 17 24 24 H 1.48490 * 109.47079 * 330.00199 * 21 19 17 25 25 C 1.39077 * 120.15882 * 359.67476 * 13 12 11 26 26 C 1.37757 * 120.08832 * 0.02562 * 25 13 12 27 27 N 1.36871 * 114.23633 * 0.02562 * 6 5 4 28 28 H 1.09000 * 109.46990 * 296.93187 * 1 2 3 29 29 H 1.08991 * 109.46687 * 56.93588 * 1 2 3 30 30 H 1.09001 * 109.46880 * 176.93619 * 1 2 3 31 31 H 1.09002 * 110.51824 * 237.08312 * 4 2 1 32 32 H 1.09001 * 110.51913 * 359.67546 * 4 2 1 33 33 H 0.97005 * 119.99690 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.00548 * 0.02562 * 9 8 7 35 35 H 1.08003 * 120.04038 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.95816 * 180.32369 * 12 11 10 37 37 H 1.09002 * 109.47456 * 89.99701 * 15 14 13 38 38 H 1.09005 * 109.47106 * 210.00103 * 15 14 13 39 39 H 1.09002 * 109.47125 * 329.99626 * 15 14 13 40 40 H 1.08991 * 109.47185 * 209.99863 * 16 14 13 41 41 H 1.08994 * 109.46837 * 330.00698 * 16 14 13 42 42 H 0.96994 * 120.00771 * 179.97438 * 20 19 17 43 43 H 1.08001 * 119.95524 * 180.02562 * 25 13 12 44 44 H 1.07999 * 120.04500 * 180.02562 * 26 25 13 45 45 H 0.97002 * 125.81703 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9156 1.0195 0.0000 4 6 2.0739 -0.7870 1.2089 5 7 2.8351 -1.8885 0.6035 6 6 2.7803 -1.8102 -0.6864 7 7 3.4035 -2.7132 -1.5168 8 7 4.1378 -3.7748 -0.9720 9 6 4.7260 -4.6262 -1.7552 10 6 5.4982 -5.7436 -1.1821 11 6 5.6026 -5.8843 0.2045 12 6 6.3199 -6.9333 0.7366 13 6 6.9500 -7.8444 -0.1043 14 7 7.6807 -8.9018 0.4381 15 6 8.3447 -9.8630 -0.4459 16 6 7.7840 -9.0512 1.8919 17 6 6.6505 -9.9101 2.3904 18 1 5.9254 -10.3048 1.6942 19 6 6.5385 -10.1910 3.7356 20 7 5.5491 -10.9402 4.1708 21 14 7.7923 -9.5076 4.9400 22 1 7.3349 -8.1833 5.4322 23 1 7.9356 -10.4395 6.0872 24 1 9.1026 -9.3567 4.2581 25 6 6.8530 -7.7042 -1.4846 26 6 6.1323 -6.6613 -2.0239 27 7 2.0492 -0.7520 -1.1545 28 1 -0.3633 0.4655 0.9162 29 1 -0.3632 0.5606 -0.8612 30 1 -0.3633 -1.0262 -0.0549 31 1 2.7278 -0.1571 1.8121 32 1 1.2535 -1.1737 1.8135 33 1 3.3345 -2.6147 -2.4793 34 1 4.6498 -4.5162 -2.8269 35 1 5.1173 -5.1746 0.8581 36 1 6.3967 -7.0456 1.8079 37 1 9.3548 -9.5172 -0.6654 38 1 8.3919 -10.8353 0.0445 39 1 7.7812 -9.9517 -1.3748 40 1 8.7343 -9.5226 2.1420 41 1 7.7303 -8.0696 2.3626 42 1 5.4705 -11.1382 5.1171 43 1 7.3432 -8.4139 -2.1345 44 1 6.0571 -6.5534 -3.0958 45 1 1.8983 -0.5349 -2.0878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779792174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:32 Heat of formation + Delta-G solvation = 125.924779 kcal Electronic energy + Delta-G solvation = -24652.296305 eV Core-core repulsion = 21092.734074 eV Total energy + Delta-G solvation = -3559.562231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.24995 -39.06100 -37.14375 -35.68703 -33.21089 -32.54138 -31.81988 -30.64764 -30.62493 -28.86828 -28.15119 -25.91612 -25.30917 -23.19471 -22.00751 -21.66398 -21.07907 -20.09857 -19.53354 -18.39426 -16.96740 -16.92484 -16.66030 -15.95521 -15.24128 -14.90902 -14.58249 -14.29024 -14.05930 -13.81956 -13.62766 -13.55865 -13.12888 -13.06663 -12.89485 -12.72087 -12.37592 -12.27162 -12.02796 -11.89214 -11.65961 -11.52253 -11.34510 -11.27588 -10.94779 -10.60867 -10.26672 -10.26115 -9.89585 -9.64290 -9.53092 -9.33197 -8.64718 -8.54164 -8.37856 -7.81281 -6.39353 -6.13033 -4.13706 1.40114 2.07138 2.14381 2.68284 3.15957 3.25095 3.31833 3.33387 3.60279 3.97797 4.29386 4.34324 4.54169 4.67225 4.76436 4.85299 4.91746 5.17314 5.27101 5.33378 5.41298 5.48176 5.52176 5.64687 5.70311 5.78135 5.89476 5.92249 5.95200 5.99527 6.16651 6.17505 6.28473 6.33620 6.50421 6.61622 6.72363 6.74844 6.96348 7.04140 7.16284 7.44487 7.53270 7.79446 7.83887 7.97743 8.26037 8.49553 8.54368 8.93854 9.46293 10.99912 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.002605 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.731062 B =10746.321654 C =12292.829995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.080 0.920 4 C 0.041 3.959 5 N -0.589 5.589 6 C 0.610 3.390 7 N -0.574 5.574 8 N -0.222 5.222 9 C 0.123 3.877 10 C -0.145 4.145 11 C -0.025 4.025 12 C -0.195 4.195 13 C 0.257 3.743 14 N -0.603 5.603 15 C 0.095 3.905 16 C 0.217 3.783 17 C -0.536 4.536 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.871 3.129 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.266 1.266 25 C -0.224 4.224 26 C -0.040 4.040 27 N -0.766 5.766 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.384 0.616 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.265 0.735 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 18.859 -14.866 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.098 0.902 4 C -0.091 4.091 5 N -0.327 5.327 6 C 0.245 3.755 7 N -0.303 5.303 8 N -0.027 5.027 9 C -0.088 4.088 10 C -0.151 4.151 11 C -0.046 4.046 12 C -0.217 4.217 13 C 0.148 3.852 14 N -0.307 5.307 15 C -0.049 4.049 16 C 0.096 3.904 17 C -0.575 4.575 18 H 0.095 0.905 19 C -0.129 4.129 20 N -0.531 5.531 21 Si 0.698 3.302 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.247 4.247 26 C -0.062 4.062 27 N -0.417 5.417 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.222 0.778 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.647 18.451 -12.710 22.700 hybrid contribution -0.062 0.846 -1.561 1.776 sum -3.708 19.297 -14.271 24.286 Atomic orbital electron populations 1.22155 0.94510 1.02665 1.02321 1.22095 0.94356 0.95767 0.86920 0.90185 1.23026 0.97694 0.92459 0.95889 1.74709 1.30860 1.24924 1.02203 1.18855 0.86252 0.82224 0.88171 1.44188 1.54462 1.26311 1.05389 1.75058 1.05812 0.96392 1.25403 1.24321 0.95068 0.93314 0.96047 1.17818 1.06500 0.97345 0.93415 1.21111 0.94085 0.95586 0.93844 1.20837 1.03692 0.96744 1.00473 1.18115 0.88402 0.86828 0.91897 1.46823 1.51585 1.25288 1.07025 1.21558 0.95660 0.93305 0.94345 1.19734 0.97593 0.97216 0.75844 1.21434 1.11029 1.31342 0.93669 0.90492 1.24892 0.95319 0.94634 0.98092 1.69892 1.30728 1.37338 1.15171 0.86921 0.82332 0.79557 0.81379 1.19715 1.20972 1.19029 1.20448 1.08814 1.02391 0.93088 1.20696 0.94530 0.92857 0.98105 1.45866 1.57808 1.29383 1.08604 0.91028 0.92542 0.92019 0.90353 0.90125 0.77801 0.87689 0.85346 0.84961 0.94241 0.91068 0.92154 0.95249 0.95192 0.92453 0.86259 0.86653 0.75665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.42 37.16 0.35 -0.68 16 2 C 0.12 0.95 4.42 -66.91 -0.30 0.66 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.04 0.46 7.69 -3.19 -0.02 0.44 16 5 N -0.59 -9.20 11.33 -61.22 -0.69 -9.89 16 6 C 0.61 7.92 8.77 -322.00 -2.82 5.10 16 7 N -0.57 -7.06 6.39 29.87 0.19 -6.87 16 8 N -0.22 -3.36 10.29 32.15 0.33 -3.03 16 9 C 0.12 1.63 10.75 -14.68 -0.16 1.47 16 10 C -0.15 -2.24 5.87 -105.02 -0.62 -2.86 16 11 C -0.03 -0.45 9.57 -39.19 -0.37 -0.83 16 12 C -0.20 -3.88 9.19 -39.44 -0.36 -4.24 16 13 C 0.26 4.94 6.56 -83.74 -0.55 4.39 16 14 N -0.60 -12.17 2.99 -180.94 -0.54 -12.71 16 15 C 0.10 1.54 10.18 59.85 0.61 2.15 16 16 C 0.22 5.02 3.97 -5.19 -0.02 5.00 16 17 C -0.54 -14.76 9.94 -34.44 -0.34 -15.11 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 21 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 25 C -0.22 -3.57 9.19 -39.45 -0.36 -3.93 16 26 C -0.04 -0.57 9.78 -39.19 -0.38 -0.95 16 27 N -0.77 -6.80 6.22 -54.58 -0.34 -7.14 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 33 H 0.38 3.27 8.77 -182.60 -1.60 1.67 16 34 H 0.11 0.99 8.02 -52.49 -0.42 0.57 16 35 H 0.13 2.36 7.55 -52.48 -0.40 1.97 16 36 H 0.13 2.85 6.12 -52.49 -0.32 2.53 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 39 H 0.06 0.86 6.18 -51.93 -0.32 0.54 16 40 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 41 H 0.03 0.69 5.61 -51.93 -0.29 0.40 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.12 1.65 6.12 -52.49 -0.32 1.32 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.41 2.42 8.96 -40.82 -0.37 2.05 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -33.93 373.70 -12.55 -46.47 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.78 Total: 5.10 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -5.45 Total: -7.42 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.28 Total: -65.87 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.93 -12.55 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779792174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.399 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds