Wall clock time and date at job start Tue Mar 31 2020 10:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.71288 * 2 1 4 4 C 1.54167 * 110.65660 * 123.06433 * 2 1 3 5 5 N 1.46936 * 104.02284 * 118.45273 * 4 2 1 6 6 C 1.29347 * 110.09562 * 359.97438 * 5 4 2 7 7 N 1.37601 * 122.88055 * 180.02562 * 6 5 4 8 8 N 1.40097 * 120.00155 * 359.96853 * 7 6 5 9 9 C 1.29781 * 119.99824 * 180.02562 * 8 7 6 10 10 C 1.47424 * 120.00168 * 180.02562 * 9 8 7 11 11 C 1.39765 * 120.07751 * 359.72465 * 10 9 8 12 12 C 1.37760 * 119.91717 * 179.69944 * 11 10 9 13 13 C 1.39079 * 120.08002 * 0.60109 * 12 11 10 14 14 N 1.39510 * 119.91797 * 179.69994 * 13 12 11 15 15 C 1.46502 * 120.00077 * 179.97438 * 14 13 12 16 16 C 1.46505 * 120.00208 * 359.97438 * 14 13 12 17 17 C 1.50702 * 109.46748 * 90.00173 * 16 14 13 18 18 H 1.07996 * 120.00456 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99687 * 180.02562 * 17 16 14 20 20 N 1.31515 * 120.00261 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00117 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46612 * 90.00069 * 21 19 17 23 23 H 1.48492 * 109.47151 * 209.99798 * 21 19 17 24 24 H 1.48490 * 109.47079 * 330.00199 * 21 19 17 25 25 C 1.39077 * 120.15882 * 359.67476 * 13 12 11 26 26 C 1.37757 * 120.08832 * 0.02562 * 25 13 12 27 27 N 1.36871 * 114.23633 * 0.02562 * 6 5 4 28 28 H 1.09000 * 109.46990 * 296.93187 * 1 2 3 29 29 H 1.08991 * 109.46687 * 56.93588 * 1 2 3 30 30 H 1.09001 * 109.46880 * 176.93619 * 1 2 3 31 31 H 1.09002 * 110.51824 * 237.08312 * 4 2 1 32 32 H 1.09001 * 110.51913 * 359.67546 * 4 2 1 33 33 H 0.97005 * 119.99690 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.00548 * 0.02562 * 9 8 7 35 35 H 1.08003 * 120.04038 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.95816 * 180.32369 * 12 11 10 37 37 H 1.09002 * 109.47456 * 89.99701 * 15 14 13 38 38 H 1.09005 * 109.47106 * 210.00103 * 15 14 13 39 39 H 1.09002 * 109.47125 * 329.99626 * 15 14 13 40 40 H 1.08991 * 109.47185 * 209.99863 * 16 14 13 41 41 H 1.08994 * 109.46837 * 330.00698 * 16 14 13 42 42 H 0.96994 * 120.00771 * 179.97438 * 20 19 17 43 43 H 1.08001 * 119.95524 * 180.02562 * 25 13 12 44 44 H 1.07999 * 120.04500 * 180.02562 * 26 25 13 45 45 H 0.97002 * 125.81703 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9156 1.0195 0.0000 4 6 2.0739 -0.7870 1.2089 5 7 2.8351 -1.8885 0.6035 6 6 2.7803 -1.8102 -0.6864 7 7 3.4035 -2.7132 -1.5168 8 7 4.1378 -3.7748 -0.9720 9 6 4.7260 -4.6262 -1.7552 10 6 5.4982 -5.7436 -1.1821 11 6 5.6026 -5.8843 0.2045 12 6 6.3199 -6.9333 0.7366 13 6 6.9500 -7.8444 -0.1043 14 7 7.6807 -8.9018 0.4381 15 6 8.3447 -9.8630 -0.4459 16 6 7.7840 -9.0512 1.8919 17 6 6.6505 -9.9101 2.3904 18 1 5.9254 -10.3048 1.6942 19 6 6.5385 -10.1910 3.7356 20 7 5.5491 -10.9402 4.1708 21 14 7.7923 -9.5076 4.9400 22 1 7.3349 -8.1833 5.4322 23 1 7.9356 -10.4395 6.0872 24 1 9.1026 -9.3567 4.2581 25 6 6.8530 -7.7042 -1.4846 26 6 6.1323 -6.6613 -2.0239 27 7 2.0492 -0.7520 -1.1545 28 1 -0.3633 0.4655 0.9162 29 1 -0.3632 0.5606 -0.8612 30 1 -0.3633 -1.0262 -0.0549 31 1 2.7278 -0.1571 1.8121 32 1 1.2535 -1.1737 1.8135 33 1 3.3345 -2.6147 -2.4793 34 1 4.6498 -4.5162 -2.8269 35 1 5.1173 -5.1746 0.8581 36 1 6.3967 -7.0456 1.8079 37 1 9.3548 -9.5172 -0.6654 38 1 8.3919 -10.8353 0.0445 39 1 7.7812 -9.9517 -1.3748 40 1 8.7343 -9.5226 2.1420 41 1 7.7303 -8.0696 2.3626 42 1 5.4705 -11.1382 5.1171 43 1 7.3432 -8.4139 -2.1345 44 1 6.0571 -6.5534 -3.0958 45 1 1.8983 -0.5349 -2.0878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779792174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:31 Heat of formation + Delta-G solvation = 103.586445 kcal Electronic energy + Delta-G solvation = -24653.264968 eV Core-core repulsion = 21092.734074 eV Total energy + Delta-G solvation = -3560.530894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09920 -40.40584 -38.26360 -37.03066 -34.78870 -34.00286 -32.73300 -32.01976 -31.62915 -30.38395 -29.50167 -26.98036 -26.51381 -24.76682 -23.30776 -22.76396 -22.13722 -21.18293 -20.76173 -19.29446 -19.07576 -18.16432 -17.85526 -16.86970 -16.60674 -16.15329 -16.00692 -15.61839 -15.13245 -15.04879 -14.88815 -14.72854 -14.53538 -14.36254 -14.09135 -13.89477 -13.43289 -13.37475 -13.35377 -13.10212 -12.73698 -12.70031 -12.61120 -12.47067 -12.43042 -12.28922 -11.99513 -11.74409 -11.53739 -10.96306 -10.82055 -10.67591 -10.43694 -9.70724 -9.59170 -8.82117 -8.32881 -7.80533 -6.37974 0.21571 0.74144 1.25397 1.34324 1.36401 1.45487 1.57287 2.13672 2.30925 2.52625 2.88448 3.01440 3.22606 3.52544 3.82991 3.95667 4.07895 4.15420 4.23416 4.28065 4.42024 4.58606 4.65287 4.67435 4.73543 4.73634 4.75065 4.81592 4.86870 4.92105 4.97505 5.02469 5.03618 5.22233 5.28719 5.34029 5.37040 5.46230 5.58029 5.64836 5.84158 5.86551 6.06316 6.17574 6.58409 6.69559 6.84028 6.89709 7.07125 7.27208 7.64734 8.84419 Molecular weight = 315.18amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.002605 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.731062 B =10746.321654 C =12292.829995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.121 3.879 3 H 0.102 0.898 4 C 0.033 3.967 5 N -0.654 5.654 6 C 0.606 3.394 7 N -0.566 5.566 8 N -0.264 5.264 9 C 0.129 3.871 10 C -0.140 4.140 11 C -0.040 4.040 12 C -0.225 4.225 13 C 0.229 3.771 14 N -0.621 5.621 15 C 0.093 3.907 16 C 0.228 3.772 17 C -0.534 4.534 18 H 0.027 0.973 19 C 0.011 3.989 20 N -0.946 5.946 21 Si 0.943 3.057 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.240 1.240 25 C -0.217 4.217 26 C -0.024 4.024 27 N -0.750 5.750 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.404 0.596 34 H 0.155 0.845 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.028 0.972 42 H 0.267 0.733 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 21.104 -18.234 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 H 0.120 0.880 4 C -0.098 4.098 5 N -0.395 5.395 6 C 0.240 3.760 7 N -0.297 5.297 8 N -0.070 5.070 9 C -0.081 4.081 10 C -0.145 4.145 11 C -0.061 4.061 12 C -0.248 4.248 13 C 0.122 3.878 14 N -0.327 5.327 15 C -0.050 4.050 16 C 0.105 3.895 17 C -0.573 4.573 18 H 0.046 0.954 19 C -0.187 4.187 20 N -0.586 5.586 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.163 1.163 25 C -0.240 4.240 26 C -0.044 4.044 27 N -0.402 5.402 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.245 0.755 34 H 0.172 0.828 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.166 0.834 44 H 0.187 0.813 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.833 20.733 -16.166 26.443 hybrid contribution -0.477 0.248 -0.644 0.839 sum -3.310 20.981 -16.810 27.087 Atomic orbital electron populations 1.22100 0.93003 1.01889 1.03892 1.22194 0.95397 0.95969 0.85026 0.87981 1.23076 0.97398 0.92125 0.97165 1.74616 1.33193 1.27527 1.04142 1.18994 0.86126 0.82827 0.88056 1.43999 1.53925 1.25495 1.06319 1.74959 1.06542 0.97566 1.27897 1.24427 0.93826 0.91797 0.98095 1.18142 1.05908 0.98249 0.92226 1.21049 0.94423 0.95032 0.95566 1.20701 1.06097 0.98764 0.99210 1.18388 0.89198 0.86778 0.93456 1.46773 1.53141 1.26803 1.05995 1.21734 0.97118 0.91871 0.94228 1.19390 0.95804 0.95886 0.78444 1.21653 1.11296 1.31270 0.93087 0.95431 1.25858 0.97573 0.94932 1.00303 1.70057 1.33290 1.39535 1.15751 0.85774 0.80459 0.78534 0.78612 1.19540 1.20480 1.16292 1.20820 1.08336 1.03210 0.91586 1.21199 0.92024 0.90773 1.00451 1.45786 1.56646 1.28022 1.09712 0.89795 0.90603 0.93942 0.90419 0.90665 0.75480 0.82807 0.87097 0.88351 0.91557 0.92528 0.90025 0.94225 0.95445 0.92355 0.83439 0.81349 0.73707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.42 71.98 0.68 -0.98 16 2 C 0.12 1.77 4.42 45.25 0.20 1.97 16 3 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.03 0.77 7.69 86.69 0.67 1.43 16 5 N -0.65 -20.81 11.33 -347.60 -3.94 -24.75 16 6 C 0.61 15.16 8.77 261.20 2.29 17.45 16 7 N -0.57 -12.91 6.39 -59.41 -0.38 -13.29 16 8 N -0.26 -7.72 10.29 -52.20 -0.54 -8.26 16 9 C 0.13 3.03 10.75 87.42 0.94 3.97 16 10 C -0.14 -4.06 5.87 -20.12 -0.12 -4.18 16 11 C -0.04 -1.48 9.57 22.53 0.22 -1.26 16 12 C -0.22 -9.45 9.19 22.36 0.21 -9.25 16 13 C 0.23 8.83 6.56 38.32 0.25 9.08 16 14 N -0.62 -25.25 2.99 -726.38 -2.17 -27.42 16 15 C 0.09 2.89 10.18 127.77 1.30 4.19 16 16 C 0.23 10.79 3.97 85.63 0.34 11.13 16 17 C -0.53 -30.96 9.94 25.60 0.25 -30.71 16 18 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 19 C 0.01 0.66 5.47 84.65 0.46 1.13 16 20 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 21 Si 0.94 43.97 27.47 68.60 1.88 45.86 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 25 C -0.22 -6.30 9.19 22.36 0.21 -6.10 16 26 C -0.02 -0.57 9.78 22.52 0.22 -0.35 16 27 N -0.75 -11.76 6.22 -326.60 -2.03 -13.79 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.71 7.74 -2.39 -0.02 1.69 16 33 H 0.40 5.66 8.77 -213.32 -1.87 3.79 16 34 H 0.16 2.04 8.02 -2.91 -0.02 2.01 16 35 H 0.11 4.42 7.55 -2.91 -0.02 4.40 16 36 H 0.10 4.66 6.12 -2.91 -0.02 4.64 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.89 8.07 -2.38 -0.02 1.87 16 39 H 0.08 2.13 6.18 -2.39 -0.01 2.12 16 40 H 0.04 1.79 7.13 -2.39 -0.02 1.77 16 41 H 0.03 1.32 5.61 -2.39 -0.01 1.31 16 42 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 43 H 0.15 3.42 6.12 -2.91 -0.02 3.40 16 44 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.42 3.77 8.96 -92.71 -0.83 2.94 16 Total: -1.00 -81.14 373.70 -0.49 -81.63 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -1.74 Total: 22.20 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 8.11 Total: -2.47 kcal Atomic # 7 Polarization: -138.46 SS G_CDS: -8.76 Total: -147.21 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -81.14 -0.49 -81.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779792174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.215 kcal (2) G-P(sol) polarization free energy of solvation -81.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds