Wall clock time and date at job start Tue Mar 31 2020 11:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31500 * 1 3 3 Si 1.86807 * 120.00004 * 2 1 4 4 H 1.48509 * 109.46852 * 269.99449 * 3 2 1 5 5 H 1.48494 * 109.47257 * 29.99282 * 3 2 1 6 6 H 1.48502 * 109.47365 * 149.99998 * 3 2 1 7 7 C 1.37877 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00606 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99766 * 0.02562 * 7 2 1 10 10 O 1.42909 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00023 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47008 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46791 * 65.08322 * 12 11 10 14 14 C 1.46898 * 110.99661 * 75.44090 * 13 12 11 15 15 C 1.53004 * 117.49414 * 262.41138 * 14 13 12 16 16 C 1.53001 * 117.49433 * 193.76105 * 14 13 12 17 17 C 1.46907 * 110.99816 * 199.38715 * 13 12 11 18 18 H 1.08998 * 109.24721 * 44.96503 * 17 13 12 19 19 C 1.52726 * 109.25199 * 285.54030 * 17 13 12 20 20 C 1.53338 * 108.38898 * 188.68290 * 19 17 13 21 21 C 1.52736 * 108.36375 * 69.90880 * 20 19 17 22 22 C 1.50634 * 110.57872 * 308.88824 * 21 20 19 23 23 C 1.38918 * 117.74230 * 197.53087 * 22 21 20 24 24 C 1.37940 * 120.54222 * 180.33275 * 23 22 21 25 25 C 1.38262 * 119.76791 * 359.96890 * 24 23 22 26 26 C 1.37937 * 119.77795 * 359.89562 * 25 24 23 27 27 C 1.37663 * 122.57173 * 17.63901 * 22 21 20 28 28 H 0.97003 * 120.00777 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47198 * 60.00026 * 9 7 2 30 30 H 1.08996 * 109.47674 * 299.99802 * 9 7 2 31 31 H 1.09001 * 109.46836 * 60.00225 * 11 10 9 32 32 H 1.08994 * 109.47675 * 300.00038 * 11 10 9 33 33 H 1.08995 * 109.47068 * 305.08808 * 12 11 10 34 34 H 1.08999 * 109.47125 * 185.08600 * 12 11 10 35 35 H 1.08997 * 115.55586 * 48.08965 * 14 13 12 36 36 H 1.09002 * 117.50153 * 0.02562 * 15 14 13 37 37 H 1.09006 * 117.49438 * 145.01927 * 15 14 13 38 38 H 1.09007 * 117.49984 * 214.97459 * 16 14 13 39 39 H 1.08998 * 117.50267 * 359.97104 * 16 14 13 40 40 H 1.09000 * 109.68250 * 308.40682 * 19 17 13 41 41 H 1.08998 * 109.68647 * 68.95935 * 19 17 13 42 42 H 1.09006 * 109.68049 * 310.19431 * 20 19 17 43 43 H 1.08995 * 109.71893 * 189.64954 * 20 19 17 44 44 H 1.09001 * 109.25663 * 188.60401 * 21 20 19 45 45 H 1.09003 * 109.25846 * 69.16905 * 21 20 19 46 46 H 1.07996 * 119.73163 * 0.30486 * 23 22 21 47 47 H 1.07997 * 120.11599 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.11467 * 179.87403 * 25 24 23 49 49 H 1.07994 * 119.72910 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6528 0.6998 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9562 0.0017 13 7 3.4067 -5.8884 1.2579 14 6 2.6323 -6.4520 2.3716 15 6 1.8721 -5.4739 3.2696 16 6 3.1303 -6.1725 3.7910 17 6 4.7054 -6.5623 1.1256 18 1 5.1696 -6.2664 0.1848 19 6 4.4904 -8.0744 1.1263 20 6 5.8607 -8.7578 1.2077 21 6 6.4373 -8.5152 2.6010 22 6 6.3946 -7.0490 2.9438 23 6 7.1985 -6.6048 3.9861 24 6 7.1993 -5.2752 4.3531 25 6 6.3942 -4.3762 3.6783 26 6 5.5973 -4.8148 2.6413 27 6 5.5960 -6.1532 2.2693 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 0.9447 -4.9826 -0.8887 32 1 0.9452 -4.9822 0.8913 33 1 3.3225 -5.7951 -0.8392 34 1 2.1822 -6.9374 -0.0889 35 1 2.1727 -7.4219 2.1814 36 1 1.9463 -4.4123 3.0338 37 1 0.9124 -5.8005 3.6704 38 1 2.9979 -6.9583 4.5348 39 1 4.0327 -5.5708 3.8984 40 1 3.8865 -8.3589 1.9879 41 1 3.9849 -8.3738 0.2082 42 1 6.5270 -8.3349 0.4558 43 1 5.7482 -9.8286 1.0381 44 1 7.4708 -8.8605 2.6275 45 1 5.8538 -9.0727 3.3337 46 1 7.8276 -7.3064 4.5136 47 1 7.8267 -4.9374 5.1647 48 1 6.3889 -3.3343 3.9623 49 1 4.9691 -4.1119 2.1145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815065138.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:48 Heat of formation + Delta-G solvation = 5.627000 kcal Electronic energy + Delta-G solvation = -27405.791659 eV Core-core repulsion = 23912.260517 eV Total energy + Delta-G solvation = -3493.531142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.58395 -38.10936 -36.36725 -35.87682 -33.91001 -32.67486 -31.59591 -30.18954 -29.08440 -27.38500 -26.31828 -23.50636 -22.78923 -22.43807 -22.26409 -21.99800 -21.67500 -20.02515 -18.90945 -16.71147 -16.26385 -15.86155 -15.65376 -15.49766 -15.37242 -15.04563 -14.69315 -14.23344 -14.01208 -13.90687 -13.72877 -13.29672 -13.07352 -12.75997 -12.64057 -12.54707 -12.21783 -12.14025 -11.69576 -11.48084 -11.34302 -11.22071 -11.10709 -10.92852 -10.79663 -10.74831 -10.63167 -10.43935 -10.31411 -10.06876 -9.96710 -9.79844 -9.01515 -8.71949 -8.51337 -8.41189 -8.06957 -8.00396 -6.04987 -4.05666 1.48224 1.55545 3.33733 3.38754 3.44382 3.77720 4.00254 4.05767 4.40499 4.61052 4.63238 4.78353 4.92443 5.01188 5.09560 5.14136 5.17665 5.22138 5.29513 5.31670 5.39088 5.39589 5.43138 5.51619 5.57771 5.64707 5.73381 5.77212 5.82694 5.84693 5.91383 5.96986 5.98782 6.10618 6.14829 6.19116 6.22776 6.28703 6.35220 6.41033 6.57740 6.61681 6.75753 6.81848 7.17340 7.19846 7.31576 7.39730 7.52224 7.86774 8.24389 8.70738 9.09705 9.59171 11.06686 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.003813 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.129977 B = 7341.259585 C = 8252.834248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.380 6.380 11 C 0.069 3.931 12 C 0.065 3.935 13 N -0.487 5.487 14 C 0.008 3.992 15 C -0.162 4.162 16 C -0.176 4.176 17 C 0.128 3.872 18 H 0.090 0.910 19 C -0.150 4.150 20 C -0.115 4.115 21 C -0.077 4.077 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.084 4.084 27 C -0.060 4.060 28 H 0.263 0.737 29 H 0.000 1.000 30 H 0.002 0.998 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.042 -19.075 6.627 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.300 6.300 11 C -0.009 4.009 12 C -0.062 4.062 13 N -0.209 5.209 14 C -0.101 4.101 15 C -0.200 4.200 16 C -0.213 4.213 17 C 0.020 3.980 18 H 0.108 0.892 19 C -0.189 4.189 20 C -0.153 4.153 21 C -0.114 4.114 22 C -0.078 4.078 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.102 4.102 27 C -0.060 4.060 28 H 0.072 0.928 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.138 0.862 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.158 -18.406 6.715 22.547 hybrid contribution -0.219 0.069 -0.125 0.262 sum 10.939 -18.337 6.590 22.346 Atomic orbital electron populations 1.69959 1.06091 1.26983 1.50944 1.24926 0.94912 0.99315 0.95330 0.86389 0.79737 0.82510 0.78165 1.20563 1.21172 1.19625 1.21055 0.94008 0.89391 1.50232 0.91619 1.20131 0.88829 0.83908 0.94976 1.87914 1.34651 1.12382 1.95035 1.22198 0.93850 0.86048 0.98788 1.22134 0.96382 0.96353 0.91353 1.61823 1.02034 1.53577 1.03507 1.22237 1.02028 0.96765 0.89023 1.23093 0.94931 0.99967 1.01996 1.23275 0.99952 1.03405 0.94670 1.20508 0.89569 0.91015 0.96865 0.89202 1.22273 0.97748 0.96574 1.02327 1.21484 0.96707 1.00160 0.96934 1.20430 1.01155 0.92629 0.97212 1.19524 0.97216 0.94977 0.96128 1.20992 1.00265 0.95859 0.97961 1.21020 0.99496 0.93538 0.99900 1.21166 0.97204 0.99709 0.96924 1.21417 0.96915 0.95812 0.96090 1.19398 0.96647 0.93271 0.96730 0.92788 0.98251 0.97983 0.94756 0.94194 0.90357 0.94099 0.90301 0.87331 0.89469 0.89916 0.87161 0.90928 0.91761 0.91620 0.91769 0.91196 0.91064 0.86864 0.86681 0.86215 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.28 55.43 0.74 -26.47 16 2 C 0.06 1.63 5.46 -17.83 -0.10 1.53 16 3 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -15.07 9.43 -34.44 -0.32 -15.39 16 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 9 C 0.20 5.42 5.69 36.00 0.20 5.62 16 10 O -0.38 -9.14 10.27 -35.23 -0.36 -9.50 16 11 C 0.07 1.29 6.11 37.16 0.23 1.52 16 12 C 0.07 0.97 4.89 -3.82 -0.02 0.95 16 13 N -0.49 -7.07 3.56 -220.30 -0.78 -7.86 16 14 C 0.01 0.11 3.02 -67.71 -0.20 -0.09 16 15 C -0.16 -2.38 9.33 -26.70 -0.25 -2.63 16 16 C -0.18 -2.34 9.25 -26.70 -0.25 -2.58 16 17 C 0.13 1.62 2.17 -69.04 -0.15 1.47 16 18 H 0.09 1.19 7.70 -51.93 -0.40 0.79 16 19 C -0.15 -1.54 4.71 -26.70 -0.13 -1.66 16 20 C -0.11 -1.01 5.98 -26.69 -0.16 -1.17 16 21 C -0.08 -0.70 5.67 -28.05 -0.16 -0.86 16 22 C -0.08 -0.89 5.74 -104.61 -0.60 -1.49 16 23 C -0.13 -1.45 9.61 -39.44 -0.38 -1.83 16 24 C -0.12 -1.39 10.05 -39.68 -0.40 -1.79 16 25 C -0.13 -1.73 9.91 -39.68 -0.39 -2.12 16 26 C -0.08 -1.22 6.89 -39.44 -0.27 -1.49 16 27 C -0.06 -0.78 3.63 -104.62 -0.38 -1.16 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.74 6.63 -51.93 -0.34 0.40 16 33 H 0.08 1.16 7.66 -51.93 -0.40 0.76 16 34 H 0.04 0.51 7.71 -51.93 -0.40 0.11 16 35 H 0.08 0.98 7.24 -51.93 -0.38 0.61 16 36 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 39 H 0.11 1.60 4.49 -51.93 -0.23 1.37 16 40 H 0.07 0.78 6.13 -51.93 -0.32 0.46 16 41 H 0.06 0.63 7.73 -51.93 -0.40 0.22 16 42 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.11 1.00 8.05 -52.49 -0.42 0.58 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 49 H 0.14 2.40 7.62 -52.49 -0.40 2.00 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -30.96 380.04 -11.74 -42.69 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.31 Total: 1.51 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.73 Total: -23.18 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.36 Total: -9.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.96 -11.74 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815065138.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.321 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds