Wall clock time and date at job start Tue Mar 31 2020 11:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47057 * 270.00405 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00309 * 3 2 1 6 6 H 1.48502 * 109.47029 * 150.00073 * 3 2 1 7 7 C 1.37877 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00448 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99695 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.42890 * 114.00615 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47001 * 65.00150 * 12 11 10 14 14 C 1.48366 * 111.08211 * 70.53910 * 13 12 11 15 15 C 1.53092 * 85.95693 * 136.89444 * 14 13 12 16 16 C 1.53474 * 115.22440 * 93.51008 * 15 14 13 17 17 C 1.55085 * 103.95858 * 107.23888 * 16 15 14 18 18 C 1.54960 * 102.87045 * 37.22240 * 17 16 15 19 19 C 1.53087 * 115.46246 * 219.83498 * 15 14 13 20 20 C 1.48122 * 110.99761 * 170.00139 * 13 12 11 21 21 H 1.08998 * 113.80688 * 337.34047 * 20 13 12 22 22 C 1.50706 * 113.80150 * 108.72391 * 20 13 12 23 23 C 1.38228 * 119.99983 * 18.76463 * 22 20 13 24 24 C 1.38238 * 120.00110 * 180.21781 * 23 22 20 25 25 C 1.38234 * 119.99675 * 359.52133 * 24 23 22 26 26 C 1.38235 * 120.00220 * 0.28720 * 25 24 23 27 27 C 1.38234 * 119.99892 * 198.54684 * 22 20 13 28 28 H 0.96998 * 119.99949 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47605 * 59.99859 * 9 7 2 30 30 H 1.09006 * 109.47483 * 300.00190 * 9 7 2 31 31 H 1.09004 * 109.47171 * 59.99234 * 11 10 9 32 32 H 1.09001 * 109.46950 * 300.00021 * 11 10 9 33 33 H 1.09004 * 109.47076 * 304.99931 * 12 11 10 34 34 H 1.09000 * 109.47139 * 185.00054 * 12 11 10 35 35 H 1.08996 * 113.69530 * 22.63836 * 14 13 12 36 36 H 1.08998 * 113.98096 * 251.18155 * 14 13 12 37 37 H 1.09000 * 110.53443 * 225.85815 * 16 15 14 38 38 H 1.08999 * 110.53612 * 348.62448 * 16 15 14 39 39 H 1.08993 * 110.73479 * 278.87245 * 17 16 15 40 40 H 1.09004 * 110.88742 * 155.63764 * 17 16 15 41 41 H 1.09005 * 110.47808 * 203.81038 * 18 17 16 42 42 H 1.08997 * 110.59732 * 81.24140 * 18 17 16 43 43 H 1.09003 * 110.09947 * 348.77410 * 19 15 14 44 44 H 1.08991 * 110.10361 * 110.33579 * 19 15 14 45 45 H 1.08004 * 120.00281 * 0.02562 * 23 22 20 46 46 H 1.08002 * 120.00519 * 179.80752 * 24 23 22 47 47 H 1.07999 * 120.00009 * 180.25939 * 25 24 23 48 48 H 1.07996 * 120.00471 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00324 * 0.02562 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.4123 -2.6542 -0.0022 12 6 5.8069 -4.1324 -0.0028 13 7 5.3676 -4.7560 -1.2583 14 6 6.1761 -4.2738 -2.4050 15 6 6.2033 -5.7351 -2.8606 16 6 5.1022 -6.1313 -3.8536 17 6 5.8525 -6.2867 -5.2019 18 6 7.2038 -6.9134 -4.7747 19 6 7.5369 -6.2209 -3.4344 20 6 5.9356 -6.1164 -1.4024 21 1 6.8405 -6.2796 -0.8171 22 6 4.9217 -7.2193 -1.2384 23 6 3.5733 -6.9431 -1.3665 24 6 2.6430 -7.9539 -1.2116 25 6 3.0618 -9.2427 -0.9385 26 6 4.4104 -9.5196 -0.8144 27 6 5.3404 -8.5079 -0.9644 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 5.8151 -2.1713 0.8881 32 1 5.8151 -2.1699 -0.8918 33 1 5.3310 -4.6358 0.8389 34 1 6.8897 -4.2196 0.0867 35 1 7.1530 -3.8839 -2.1191 36 1 5.6351 -3.6122 -3.0815 37 1 4.6442 -7.0758 -3.5599 38 1 4.3496 -5.3459 -3.9233 39 1 6.0088 -5.3153 -5.6708 40 1 5.3122 -6.9548 -5.8726 41 1 7.9743 -6.7004 -5.5158 42 1 7.0997 -7.9891 -4.6326 43 1 8.2018 -5.3743 -3.6053 44 1 8.0026 -6.9306 -2.7507 45 1 3.2464 -5.9371 -1.5844 46 1 1.5894 -7.7376 -1.3086 47 1 2.3352 -10.0331 -0.8217 48 1 4.7375 -10.5264 -0.6006 49 1 6.3940 -8.7242 -0.8675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839125830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:09 Heat of formation + Delta-G solvation = 5.664040 kcal Electronic energy + Delta-G solvation = -26901.347379 eV Core-core repulsion = 23407.817843 eV Total energy + Delta-G solvation = -3493.529536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24537 -38.53374 -37.08856 -35.93254 -32.69889 -31.79032 -30.78407 -30.59174 -28.83348 -28.08209 -26.65782 -25.82961 -23.46059 -22.48425 -21.79814 -21.35818 -21.02958 -20.25122 -18.34579 -16.82725 -16.80673 -16.28927 -15.83553 -15.56692 -15.18706 -14.95356 -14.74170 -14.35880 -14.21834 -13.83387 -13.74454 -13.48431 -13.19977 -12.98326 -12.65321 -12.50848 -12.43663 -12.20134 -11.96963 -11.58085 -11.29615 -11.22872 -11.02685 -10.99303 -10.87521 -10.83418 -10.74055 -10.64868 -10.44196 -10.31770 -10.15226 -9.83269 -9.13138 -8.81064 -8.76805 -8.64289 -8.48568 -8.40740 -6.07768 -4.05962 1.42979 1.55889 3.26243 3.33097 3.34630 3.73765 3.98618 4.27845 4.38321 4.43828 4.63895 4.68698 4.87973 4.98545 5.01025 5.08926 5.10348 5.16057 5.23553 5.25271 5.29317 5.37888 5.46384 5.51965 5.57511 5.63431 5.67378 5.71250 5.75676 5.79074 5.80394 5.84360 5.91584 5.97199 6.05071 6.07630 6.15379 6.19037 6.25165 6.30424 6.33613 6.46388 6.56278 6.64070 6.72364 6.84057 7.03994 7.15433 7.21659 7.64426 8.09104 8.72710 9.05522 9.52100 11.05444 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.003575 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.911806 B = 7829.627667 C = 8749.203696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.364 6.364 11 C 0.066 3.934 12 C 0.027 3.973 13 N -0.449 5.449 14 C 0.012 3.988 15 C -0.075 4.075 16 C -0.098 4.098 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.112 4.112 20 C 0.075 3.925 21 H 0.081 0.919 22 C -0.063 4.063 23 C -0.081 4.081 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.118 4.118 28 H 0.266 0.734 29 H -0.001 1.001 30 H -0.004 1.004 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.141 0.859 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.524 -17.282 -6.936 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.283 6.283 11 C -0.013 4.013 12 C -0.101 4.101 13 N -0.171 5.171 14 C -0.116 4.116 15 C -0.075 4.075 16 C -0.135 4.135 17 C -0.163 4.163 18 C -0.159 4.159 19 C -0.150 4.150 20 C -0.034 4.034 21 H 0.099 0.901 22 C -0.063 4.063 23 C -0.099 4.099 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.137 4.137 28 H 0.076 0.924 29 H 0.017 0.983 30 H 0.013 0.987 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.158 0.842 46 H 0.139 0.861 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.522 -17.183 -6.893 24.160 hybrid contribution 1.498 1.196 0.317 1.943 sum 17.020 -15.986 -6.576 24.259 Atomic orbital electron populations 1.69879 1.06025 1.26966 1.50644 1.24760 0.94775 0.98648 0.94779 0.86871 0.80341 0.83928 0.78706 1.19986 1.20827 1.19208 1.20889 0.88282 0.95279 1.50741 0.89907 1.20576 0.96212 0.79915 0.94001 1.88006 1.16706 1.28737 1.94867 1.22237 0.85807 0.94381 0.98837 1.22642 0.97157 0.95739 0.94604 1.68647 1.45343 1.00911 1.02172 1.23988 0.96907 0.96053 0.94687 1.22335 0.96086 0.95380 0.93718 1.22143 0.96436 1.02366 0.92578 1.22548 0.95802 1.00584 0.97359 1.22363 0.97349 0.99708 0.96516 1.22090 0.96173 0.99964 0.96805 1.22371 0.94790 0.90319 0.95960 0.90109 1.19392 0.94182 0.93109 0.99626 1.21292 0.92045 1.00216 0.96314 1.21266 0.99915 0.93006 1.00085 1.21123 0.95740 0.96849 1.00564 1.20984 0.93311 0.98734 1.01732 1.20884 0.99126 0.92695 1.00995 0.92445 0.98306 0.98676 0.94259 0.94581 0.89803 0.93684 0.91543 0.88923 0.90587 0.90636 0.91613 0.91787 0.92063 0.91839 0.91553 0.91780 0.84151 0.86077 0.86614 0.86645 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.51 -15.55 9.99 -34.44 -0.34 -15.90 16 8 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.17 4.37 4.76 36.00 0.17 4.54 16 10 O -0.36 -8.67 10.27 -35.23 -0.36 -9.04 16 11 C 0.07 1.17 6.09 37.16 0.23 1.39 16 12 C 0.03 0.40 5.20 -3.82 -0.02 0.38 16 13 N -0.45 -6.51 4.91 -234.60 -1.15 -7.67 16 14 C 0.01 0.15 6.13 -2.97 -0.02 0.13 16 15 C -0.07 -0.81 1.09 -154.21 -0.17 -0.98 16 16 C -0.10 -1.11 5.29 -25.38 -0.13 -1.24 16 17 C -0.13 -1.18 6.91 -24.59 -0.17 -1.35 16 18 C -0.12 -1.03 6.85 -24.91 -0.17 -1.20 16 19 C -0.11 -1.00 6.33 -25.90 -0.16 -1.16 16 20 C 0.07 0.90 3.02 -68.15 -0.21 0.69 16 21 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 22 C -0.06 -0.79 4.12 -104.62 -0.43 -1.23 16 23 C -0.08 -1.15 7.77 -39.59 -0.31 -1.45 16 24 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 26 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 27 C -0.12 -1.32 9.74 -39.58 -0.39 -1.71 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 30 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.61 7.42 -51.93 -0.39 0.23 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.54 7.71 -51.93 -0.40 0.14 16 35 H 0.07 0.73 7.74 -51.93 -0.40 0.33 16 36 H 0.09 1.26 8.01 -51.93 -0.42 0.84 16 37 H 0.08 0.92 5.90 -51.93 -0.31 0.61 16 38 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.56 7.90 -51.93 -0.41 0.15 16 44 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 45 H 0.14 2.32 7.34 -52.48 -0.39 1.93 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -32.27 384.01 -11.55 -43.81 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.51 Total: -0.06 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -3.41 Total: -22.65 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.38 Total: -34.89 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.36 Total: -9.04 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.27 -11.55 -43.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839125830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.476 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds