Wall clock time and date at job start Tue Mar 31 2020 11:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48503 * 109.47057 * 270.00405 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00309 * 3 2 1 6 6 H 1.48502 * 109.47029 * 150.00073 * 3 2 1 7 7 C 1.37877 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00448 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99695 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.42890 * 114.00615 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47001 * 65.00150 * 12 11 10 14 14 C 1.48366 * 111.08211 * 70.53910 * 13 12 11 15 15 C 1.53092 * 85.95693 * 136.89444 * 14 13 12 16 16 C 1.53474 * 115.22440 * 93.51008 * 15 14 13 17 17 C 1.55085 * 103.95858 * 107.23888 * 16 15 14 18 18 C 1.54960 * 102.87045 * 37.22240 * 17 16 15 19 19 C 1.53087 * 115.46246 * 219.83498 * 15 14 13 20 20 C 1.48122 * 110.99761 * 170.00139 * 13 12 11 21 21 H 1.08998 * 113.80688 * 337.34047 * 20 13 12 22 22 C 1.50706 * 113.80150 * 108.72391 * 20 13 12 23 23 C 1.38228 * 119.99983 * 18.76463 * 22 20 13 24 24 C 1.38238 * 120.00110 * 180.21781 * 23 22 20 25 25 C 1.38234 * 119.99675 * 359.52133 * 24 23 22 26 26 C 1.38235 * 120.00220 * 0.28720 * 25 24 23 27 27 C 1.38234 * 119.99892 * 198.54684 * 22 20 13 28 28 H 0.96998 * 119.99949 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47605 * 59.99859 * 9 7 2 30 30 H 1.09006 * 109.47483 * 300.00190 * 9 7 2 31 31 H 1.09004 * 109.47171 * 59.99234 * 11 10 9 32 32 H 1.09001 * 109.46950 * 300.00021 * 11 10 9 33 33 H 1.09004 * 109.47076 * 304.99931 * 12 11 10 34 34 H 1.09000 * 109.47139 * 185.00054 * 12 11 10 35 35 H 1.08996 * 113.69530 * 22.63836 * 14 13 12 36 36 H 1.08998 * 113.98096 * 251.18155 * 14 13 12 37 37 H 1.09000 * 110.53443 * 225.85815 * 16 15 14 38 38 H 1.08999 * 110.53612 * 348.62448 * 16 15 14 39 39 H 1.08993 * 110.73479 * 278.87245 * 17 16 15 40 40 H 1.09004 * 110.88742 * 155.63764 * 17 16 15 41 41 H 1.09005 * 110.47808 * 203.81038 * 18 17 16 42 42 H 1.08997 * 110.59732 * 81.24140 * 18 17 16 43 43 H 1.09003 * 110.09947 * 348.77410 * 19 15 14 44 44 H 1.08991 * 110.10361 * 110.33579 * 19 15 14 45 45 H 1.08004 * 120.00281 * 0.02562 * 23 22 20 46 46 H 1.08002 * 120.00519 * 179.80752 * 24 23 22 47 47 H 1.07999 * 120.00009 * 180.25939 * 25 24 23 48 48 H 1.07996 * 120.00471 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00324 * 0.02562 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.4123 -2.6542 -0.0022 12 6 5.8069 -4.1324 -0.0028 13 7 5.3676 -4.7560 -1.2583 14 6 6.1761 -4.2738 -2.4050 15 6 6.2033 -5.7351 -2.8606 16 6 5.1022 -6.1313 -3.8536 17 6 5.8525 -6.2867 -5.2019 18 6 7.2038 -6.9134 -4.7747 19 6 7.5369 -6.2209 -3.4344 20 6 5.9356 -6.1164 -1.4024 21 1 6.8405 -6.2796 -0.8171 22 6 4.9217 -7.2193 -1.2384 23 6 3.5733 -6.9431 -1.3665 24 6 2.6430 -7.9539 -1.2116 25 6 3.0618 -9.2427 -0.9385 26 6 4.4104 -9.5196 -0.8144 27 6 5.3404 -8.5079 -0.9644 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 5.8151 -2.1713 0.8881 32 1 5.8151 -2.1699 -0.8918 33 1 5.3310 -4.6358 0.8389 34 1 6.8897 -4.2196 0.0867 35 1 7.1530 -3.8839 -2.1191 36 1 5.6351 -3.6122 -3.0815 37 1 4.6442 -7.0758 -3.5599 38 1 4.3496 -5.3459 -3.9233 39 1 6.0088 -5.3153 -5.6708 40 1 5.3122 -6.9548 -5.8726 41 1 7.9743 -6.7004 -5.5158 42 1 7.0997 -7.9891 -4.6326 43 1 8.2018 -5.3743 -3.6053 44 1 8.0026 -6.9306 -2.7507 45 1 3.2464 -5.9371 -1.5844 46 1 1.5894 -7.7376 -1.3086 47 1 2.3352 -10.0331 -0.8217 48 1 4.7375 -10.5264 -0.6006 49 1 6.3940 -8.7242 -0.8675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839125830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:08 Heat of formation + Delta-G solvation = -13.585671 kcal Electronic energy + Delta-G solvation = -26902.182109 eV Core-core repulsion = 23407.817843 eV Total energy + Delta-G solvation = -3494.364266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.19005 -39.48161 -38.67083 -36.99695 -34.90363 -32.93889 -31.78995 -31.66749 -29.99042 -29.61001 -27.91632 -26.78073 -24.53404 -23.97322 -23.44142 -22.37814 -21.95146 -21.15466 -19.24553 -19.05752 -17.80197 -17.34998 -17.34679 -16.75152 -16.41330 -16.19891 -16.07836 -15.77964 -15.19982 -15.00354 -14.89639 -14.58888 -14.37973 -14.24891 -14.13626 -13.72077 -13.50325 -13.36673 -13.15177 -13.04319 -12.81390 -12.60587 -12.24463 -11.95067 -11.92095 -11.87182 -11.83274 -11.72168 -11.68308 -11.39455 -11.35536 -11.29660 -11.08205 -10.93446 -10.33511 -9.72682 -9.62352 -9.43712 -8.38653 -6.46453 0.49591 0.60002 1.30232 1.34009 1.44860 2.27588 2.77199 2.93600 3.01590 3.11787 3.41010 3.59380 3.84828 3.96437 4.02991 4.11684 4.13908 4.23745 4.30421 4.32826 4.38431 4.40502 4.42559 4.48146 4.52851 4.59095 4.64641 4.72482 4.76660 4.78150 4.82709 4.90457 4.92751 4.99676 5.03478 5.12331 5.15376 5.18108 5.24855 5.25545 5.36986 5.41634 5.43142 5.46845 5.52184 5.64471 5.73656 5.84639 5.94385 6.19832 6.24193 6.57745 6.78770 7.18247 8.78937 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.003575 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.911806 B = 7829.627667 C = 8749.203696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.544 4.544 8 H 0.025 0.975 9 C 0.181 3.819 10 O -0.395 6.395 11 C 0.057 3.943 12 C 0.034 3.966 13 N -0.487 5.487 14 C 0.012 3.988 15 C -0.064 4.064 16 C -0.098 4.098 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.107 4.107 20 C 0.079 3.921 21 H 0.103 0.897 22 C -0.070 4.070 23 C -0.104 4.104 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.125 4.125 27 C -0.117 4.117 28 H 0.273 0.727 29 H 0.010 0.990 30 H 0.006 0.994 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.138 0.862 48 H 0.148 0.852 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.642 -17.758 -6.978 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.581 4.581 8 H 0.044 0.956 9 C 0.105 3.895 10 O -0.314 6.314 11 C -0.020 4.020 12 C -0.095 4.095 13 N -0.209 5.209 14 C -0.117 4.117 15 C -0.065 4.065 16 C -0.135 4.135 17 C -0.161 4.161 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.030 4.030 21 H 0.120 0.880 22 C -0.070 4.070 23 C -0.123 4.123 24 C -0.163 4.163 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.135 4.135 28 H 0.082 0.918 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.134 0.866 47 H 0.156 0.844 48 H 0.165 0.835 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 19.651 -17.684 -6.939 27.332 hybrid contribution 0.097 1.219 0.328 1.266 sum 19.748 -16.466 -6.611 26.548 Atomic orbital electron populations 1.70042 1.08290 1.28766 1.51157 1.25858 0.95809 1.03410 0.93415 0.85590 0.79414 0.77411 0.79786 1.18391 1.19618 1.16941 1.21145 0.91034 0.93692 1.52259 0.95618 1.20264 0.93256 0.81354 0.94604 1.87971 1.20852 1.27512 1.95092 1.22602 0.82390 0.97037 0.99986 1.22595 0.99073 0.93409 0.94376 1.68639 1.47050 1.02686 1.02528 1.24016 0.97161 0.96758 0.93730 1.22225 0.97088 0.94144 0.93029 1.22063 0.96326 1.00685 0.94467 1.22542 0.96573 1.00880 0.96138 1.22346 0.96583 0.99770 0.96685 1.22086 0.94675 1.00696 0.97040 1.22460 0.94962 0.88724 0.96825 0.87960 1.19538 0.93409 0.94429 0.99671 1.21062 0.93659 0.98804 0.98743 1.21361 0.99658 0.94038 1.01210 1.21390 0.97041 0.96272 0.99849 1.21394 0.92712 1.00144 1.00059 1.21203 1.00760 0.91748 0.99813 0.91792 0.97276 0.97635 0.92691 0.93502 0.91553 0.89803 0.89285 0.91208 0.91621 0.93810 0.91705 0.91454 0.90522 0.91380 0.90484 0.90248 0.88029 0.86639 0.84433 0.83462 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.96 44.57 27.47 68.60 1.88 46.45 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.25 -10.56 6.54 99.48 0.65 -9.90 16 7 C -0.54 -34.57 9.99 25.60 0.26 -34.31 16 8 H 0.03 1.85 8.06 -2.92 -0.02 1.83 16 9 C 0.18 9.52 4.76 71.24 0.34 9.86 16 10 O -0.39 -19.46 10.27 -148.98 -1.53 -20.99 16 11 C 0.06 1.99 6.09 71.98 0.44 2.43 16 12 C 0.03 0.97 5.20 86.30 0.45 1.42 16 13 N -0.49 -14.35 4.91 -896.14 -4.40 -18.74 16 14 C 0.01 0.28 6.13 86.05 0.53 0.81 16 15 C -0.06 -1.34 1.09 -51.91 -0.06 -1.39 16 16 C -0.10 -2.32 5.29 31.47 0.17 -2.15 16 17 C -0.12 -2.26 6.91 31.98 0.22 -2.04 16 18 C -0.12 -1.65 6.85 31.77 0.22 -1.43 16 19 C -0.11 -1.56 6.33 31.13 0.20 -1.37 16 20 C 0.08 1.81 3.02 43.96 0.13 1.94 16 21 H 0.10 1.90 7.74 -2.39 -0.02 1.88 16 22 C -0.07 -1.77 4.12 -19.87 -0.08 -1.85 16 23 C -0.10 -3.23 7.77 22.27 0.17 -3.05 16 24 C -0.14 -4.03 10.05 22.27 0.22 -3.81 16 25 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 26 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 27 C -0.12 -2.35 9.74 22.27 0.22 -2.13 16 28 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 29 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 30 H 0.01 0.30 7.57 -2.38 -0.02 0.28 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.53 7.42 -2.39 -0.02 1.51 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 1.74 7.71 -2.39 -0.02 1.73 16 35 H 0.09 1.73 7.74 -2.39 -0.02 1.71 16 36 H 0.07 1.98 8.01 -2.39 -0.02 1.96 16 37 H 0.07 1.68 5.90 -2.39 -0.01 1.67 16 38 H 0.04 1.28 7.87 -2.39 -0.02 1.26 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 1.00 7.90 -2.39 -0.02 0.98 16 44 H 0.08 0.96 7.90 -2.39 -0.02 0.94 16 45 H 0.10 3.87 7.34 -2.91 -0.02 3.85 16 46 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 47 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 48 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 49 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -75.36 384.01 1.43 -73.93 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.84 Total: 20.64 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.33 Total: -40.57 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -4.10 Total: -79.47 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -1.53 Total: -20.99 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -75.36 1.43 -73.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839125830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.346 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds