Wall clock time and date at job start Tue Mar 31 2020 11:56:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00229 * 2 1
4 4 H 1.48497 * 109.47421 * 240.00315 * 3 2 1
5 5 H 1.48503 * 109.46695 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47593 * 119.99844 * 3 2 1
7 7 C 1.37878 * 120.00383 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00664 * 171.16292 * 7 2 1
9 9 C 1.50701 * 119.99834 * 351.15665 * 7 2 1
10 10 C 1.53007 * 115.54977 * 324.26170 * 9 7 2
11 11 N 1.46900 * 109.46755 * 306.35986 * 10 9 7
12 12 C 1.46853 * 110.99623 * 163.88558 * 11 10 9
13 13 C 1.53037 * 109.52337 * 185.84044 * 12 11 10
14 14 C 1.53120 * 109.27796 * 300.82800 * 13 12 11
15 15 C 1.53001 * 109.51882 * 177.56033 * 14 13 12
16 16 H 1.08997 * 109.47599 * 60.00150 * 15 14 13
17 17 O 1.42903 * 109.47020 * 299.99347 * 15 14 13
18 18 C 1.50709 * 109.46824 * 179.97438 * 15 14 13
19 19 C 1.38238 * 120.00008 * 84.72282 * 18 15 14
20 20 C 1.38233 * 119.99838 * 179.78445 * 19 18 15
21 21 C 1.38239 * 119.99728 * 0.44881 * 20 19 18
22 22 C 1.38228 * 120.00244 * 359.80488 * 21 20 19
23 23 C 1.38229 * 119.99954 * 264.99573 * 18 15 14
24 24 C 1.53115 * 109.16463 * 57.65140 * 14 13 12
25 25 C 1.46846 * 111.00395 * 288.09849 * 11 10 9
26 26 C 1.52999 * 117.49897 * 109.92527 * 9 7 2
27 27 C 1.52998 * 117.50359 * 178.58511 * 9 7 2
28 28 H 0.97001 * 119.99975 * 5.01137 * 1 2 3
29 29 H 1.09002 * 109.46910 * 186.36492 * 10 9 7
30 30 H 1.08993 * 109.47099 * 66.36279 * 10 9 7
31 31 H 1.09000 * 109.45756 * 65.82976 * 12 11 10
32 32 H 1.08993 * 109.46444 * 305.86404 * 12 11 10
33 33 H 1.08991 * 109.50476 * 180.88453 * 13 12 11
34 34 H 1.08996 * 109.53297 * 60.78388 * 13 12 11
35 35 H 1.09000 * 109.51862 * 297.68101 * 14 13 12
36 36 H 0.96702 * 114.00066 * 300.00202 * 17 15 14
37 37 H 1.07997 * 119.99723 * 0.02562 * 19 18 15
38 38 H 1.08001 * 119.99998 * 180.27144 * 20 19 18
39 39 H 1.08005 * 119.99468 * 179.83525 * 21 20 19
40 40 H 1.07999 * 119.99869 * 180.02562 * 22 21 20
41 41 H 1.08007 * 119.99780 * 359.97438 * 23 18 15
42 42 H 1.09001 * 109.50510 * 62.28677 * 24 14 13
43 43 H 1.08993 * 109.50310 * 182.40159 * 24 14 13
44 44 H 1.09001 * 109.46115 * 294.17816 * 25 11 10
45 45 H 1.08999 * 109.45926 * 54.14709 * 25 11 10
46 46 H 1.09002 * 117.50457 * 215.00665 * 26 9 7
47 47 H 1.09000 * 117.49852 * 0.02868 * 26 9 7
48 48 H 1.09006 * 117.49293 * 359.97438 * 27 9 7
49 49 H 1.09000 * 117.49930 * 144.97163 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6964 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1030 1.6965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0750 -1.1997 -0.1431
9 6 1.2646 -2.4913 0.2018
10 6 0.0833 -2.4335 1.1724
11 7 0.5305 -1.8743 2.4551
12 6 -0.6138 -1.4484 3.2711
13 6 -0.1088 -0.7412 4.5308
14 6 0.7808 -1.7003 5.3266
15 6 1.3380 -0.9796 6.5559
16 1 0.5136 -0.6432 7.1846
17 8 2.1093 0.1484 6.1378
18 6 2.2128 -1.9247 7.3387
19 6 3.5405 -2.0870 6.9896
20 6 4.3440 -2.9505 7.7104
21 6 3.8174 -3.6587 8.7745
22 6 2.4885 -3.5003 9.1202
23 6 1.6861 -2.6335 8.4022
24 6 1.9378 -2.1665 4.4387
25 6 1.3734 -2.8324 3.1817
26 6 1.1460 -3.4307 -1.0000
27 6 2.0811 -3.7845 0.1590
28 1 -0.4850 0.8368 -0.0734
29 1 -0.3066 -3.4390 1.3306
30 1 -0.7002 -1.8017 0.7540
31 1 -1.2018 -2.3210 3.5555
32 1 -1.2359 -0.7637 2.6948
33 1 -0.9578 -0.4391 5.1437
34 1 0.4676 0.1396 4.2479
35 1 0.1941 -2.5622 5.6445
36 1 2.8618 -0.0769 5.5737
37 1 3.9509 -1.5362 6.1563
38 1 5.3824 -3.0741 7.4405
39 1 4.4446 -4.3354 9.3360
40 1 2.0773 -4.0533 9.9518
41 1 0.6477 -2.5096 8.6724
42 1 2.5466 -1.3084 4.1538
43 1 2.5508 -2.8826 4.9859
44 1 0.7760 -3.6986 3.4665
45 1 2.1946 -3.1528 2.5405
46 1 0.2265 -4.0076 -1.0993
47 1 1.6036 -3.1106 -1.9361
48 1 3.1536 -3.6969 -0.0151
49 1 1.7771 -4.5938 0.8228
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000877928395.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:56:09
Heat of formation + Delta-G solvation = 2.207149 kcal
Electronic energy + Delta-G solvation = -27585.697486 eV
Core-core repulsion = 24092.018048 eV
Total energy + Delta-G solvation = -3493.679438 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.15797 -38.41596 -37.02015 -35.61279 -32.57058 -31.94176 -31.16087 -31.00043
-30.12660 -27.06800 -25.44659 -24.44022 -23.03507 -22.28773 -21.99999 -21.03788
-20.67324 -19.05920 -18.81888 -17.64156 -16.19792 -16.02605 -15.61113 -15.38828
-14.77520 -14.57232 -14.28238 -14.14434 -13.83056 -13.69167 -13.58658 -13.48336
-12.98793 -12.65412 -12.51891 -12.25406 -11.89200 -11.73590 -11.51647 -11.23713
-11.09648 -11.06221 -10.83259 -10.76355 -10.59965 -10.40800 -10.39288 -10.29019
-10.00191 -9.79065 -9.61147 -9.18464 -8.99827 -8.88876 -8.75363 -8.53188
-7.91829 -7.06900 -5.83310 -3.85474 1.23152 1.29079 3.40569 3.45401
3.49455 3.65282 4.52204 4.52992 4.56549 4.74542 4.81044 4.86326
4.98482 5.05408 5.08553 5.22407 5.34268 5.38438 5.47095 5.67990
5.70732 5.76426 5.80924 5.84631 5.91814 5.97711 6.10859 6.15207
6.19873 6.29707 6.31233 6.34784 6.39399 6.43635 6.51926 6.58072
6.62232 6.64917 6.67729 6.75283 6.84808 6.87827 6.95079 7.00899
7.26900 7.39863 7.65439 7.68853 8.09190 8.28945 8.33469 8.63716
9.07683 9.74476 11.19099
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.015605 B = 0.004062 C = 0.003812
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1793.862018 B = 6891.608698 C = 7343.271621
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.092 3.908
3 Si 0.889 3.111
4 H -0.283 1.283
5 H -0.290 1.290
6 H -0.276 1.276
7 C -0.473 4.473
8 H 0.051 0.949
9 C 0.072 3.928
10 C 0.104 3.896
11 N -0.493 5.493
12 C 0.063 3.937
13 C -0.103 4.103
14 C -0.111 4.111
15 C 0.151 3.849
16 H 0.102 0.898
17 O -0.552 6.552
18 C -0.105 4.105
19 C -0.108 4.108
20 C -0.118 4.118
21 C -0.126 4.126
22 C -0.121 4.121
23 C -0.114 4.114
24 C -0.113 4.113
25 C 0.061 3.939
26 C -0.209 4.209
27 C -0.220 4.220
28 H 0.257 0.743
29 H -0.017 1.017
30 H 0.115 0.885
31 H 0.009 0.991
32 H 0.077 0.923
33 H 0.054 0.946
34 H 0.079 0.921
35 H 0.069 0.931
36 H 0.375 0.625
37 H 0.122 0.878
38 H 0.122 0.878
39 H 0.119 0.881
40 H 0.120 0.880
41 H 0.121 0.879
42 H 0.070 0.930
43 H 0.060 0.940
44 H 0.008 0.992
45 H 0.081 0.919
46 H 0.060 0.940
47 H 0.076 0.924
48 H 0.072 0.928
49 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.294 -5.427 15.954 17.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.515 5.515
2 C -0.111 4.111
3 Si 0.717 3.283
4 H -0.210 1.210
5 H -0.216 1.216
6 H -0.202 1.202
7 C -0.510 4.510
8 H 0.070 0.930
9 C 0.071 3.929
10 C -0.023 4.023
11 N -0.217 5.217
12 C -0.065 4.065
13 C -0.141 4.141
14 C -0.130 4.130
15 C 0.092 3.908
16 H 0.120 0.880
17 O -0.359 6.359
18 C -0.105 4.105
19 C -0.125 4.125
20 C -0.136 4.136
21 C -0.144 4.144
22 C -0.139 4.139
23 C -0.132 4.132
24 C -0.151 4.151
25 C -0.068 4.068
26 C -0.247 4.247
27 C -0.257 4.257
28 H 0.067 0.933
29 H 0.001 0.999
30 H 0.133 0.867
31 H 0.027 0.973
32 H 0.095 0.905
33 H 0.072 0.928
34 H 0.097 0.903
35 H 0.088 0.912
36 H 0.225 0.775
37 H 0.140 0.860
38 H 0.140 0.860
39 H 0.137 0.863
40 H 0.138 0.862
41 H 0.139 0.861
42 H 0.089 0.911
43 H 0.078 0.922
44 H 0.026 0.974
45 H 0.100 0.900
46 H 0.079 0.921
47 H 0.095 0.905
48 H 0.090 0.910
49 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 1.964 -4.541 16.271 17.006
hybrid contribution 0.433 -0.467 -0.176 0.661
sum 2.398 -5.008 16.095 17.026
Atomic orbital electron populations
1.69760 1.05976 1.26133 1.49609 1.24689 0.94499 0.98257 0.93663
0.86741 0.79695 0.83532 0.78288 1.20956 1.21587 1.20177 1.20215
0.92803 0.88966 1.48973 0.93037 1.18932 0.93502 0.88379 0.92100
1.21734 0.98779 0.93895 0.87857 1.61561 1.18172 1.39158 1.02769
1.21974 0.92926 0.97694 0.93923 1.21533 0.98234 0.98928 0.95413
1.21833 0.97867 0.98546 0.94749 1.20873 0.91705 0.84724 0.93510
0.87996 1.86579 1.45350 1.32707 1.71283 1.20661 0.95194 0.98316
0.96359 1.20967 0.93478 0.98573 0.99532 1.21134 0.99808 0.96835
0.95810 1.21131 0.95570 0.99925 0.97770 1.21102 0.94181 0.98757
0.99856 1.20965 0.99777 0.97015 0.95484 1.21712 0.97084 1.00607
0.95694 1.22031 0.97892 0.92436 0.94399 1.22972 0.99274 1.07920
0.94577 1.22944 0.96784 1.02590 1.03395 0.93321 0.99922 0.86732
0.97327 0.90479 0.92768 0.90278 0.91229 0.77546 0.85965 0.86044
0.86320 0.86243 0.86145 0.91134 0.92194 0.97365 0.90038 0.92131
0.90543 0.90983 0.92044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.53 10.72 55.43 0.59 -22.94 16
2 C 0.09 2.44 5.18 -17.82 -0.09 2.34 16
3 Si 0.89 21.19 29.55 -169.99 -5.02 16.16 16
4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
7 C -0.47 -12.61 8.72 -34.44 -0.30 -12.91 16
8 H 0.05 1.40 7.83 -52.49 -0.41 0.99 16
9 C 0.07 1.74 1.57 -155.66 -0.24 1.49 16
10 C 0.10 2.41 4.05 -3.82 -0.02 2.40 16
11 N -0.49 -10.31 4.17 -234.67 -0.98 -11.29 16
12 C 0.06 1.18 5.44 -3.83 -0.02 1.16 16
13 C -0.10 -1.65 5.26 -26.65 -0.14 -1.79 16
14 C -0.11 -1.55 2.14 -90.50 -0.19 -1.75 16
15 C 0.15 1.91 3.07 -27.88 -0.09 1.82 16
16 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16
17 O -0.55 -7.79 12.38 -35.23 -0.44 -8.22 16
18 C -0.10 -1.24 4.62 -104.62 -0.48 -1.72 16
19 C -0.11 -1.23 7.29 -39.58 -0.29 -1.52 16
20 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16
21 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16
22 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16
23 C -0.11 -1.23 9.68 -39.59 -0.38 -1.61 16
24 C -0.11 -1.73 4.16 -26.65 -0.11 -1.84 16
25 C 0.06 1.12 5.26 -3.84 -0.02 1.10 16
26 C -0.21 -4.77 9.96 -26.70 -0.27 -5.04 16
27 C -0.22 -4.78 8.39 -26.70 -0.22 -5.00 16
28 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16
29 H -0.02 -0.39 7.99 -51.93 -0.42 -0.80 16
30 H 0.11 2.92 5.75 -51.93 -0.30 2.62 16
31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16
32 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16
33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
34 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16
35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
36 H 0.38 4.72 5.63 45.56 0.26 4.97 16
37 H 0.12 1.31 6.24 -52.49 -0.33 0.98 16
38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16
39 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16
40 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16
41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16
42 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16
43 H 0.06 0.84 6.11 -51.93 -0.32 0.52 16
44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16
45 H 0.08 1.63 6.02 -51.93 -0.31 1.31 16
46 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16
47 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16
48 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16
49 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16
LS Contribution 374.51 15.07 5.64 5.64
Total: -1.00 -28.02 374.51 -11.87 -39.89
By element:
Atomic # 1 Polarization: 16.04 SS G_CDS: -7.60 Total: 8.44 kcal
Atomic # 6 Polarization: -23.62 SS G_CDS: -4.06 Total: -27.69 kcal
Atomic # 7 Polarization: -33.84 SS G_CDS: -0.39 Total: -34.22 kcal
Atomic # 8 Polarization: -7.79 SS G_CDS: -0.44 Total: -8.22 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -28.02 -11.87 -39.89 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000877928395.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.095 kcal
(2) G-P(sol) polarization free energy of solvation -28.022 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.073 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds