Wall clock time and date at job start Tue Mar 31 2020 12:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48492 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46990 * 300.00451 * 3 2 1 6 6 H 1.48496 * 109.47358 * 60.00127 * 3 2 1 7 7 C 1.37873 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00474 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.55265 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47036 * 34.41538 * 10 9 7 12 12 C 1.46847 * 110.99683 * 52.76150 * 11 10 9 13 13 C 1.53037 * 109.52218 * 185.83909 * 12 11 10 14 14 C 1.53118 * 109.27753 * 300.82010 * 13 12 11 15 15 C 1.53113 * 109.16098 * 57.65431 * 14 13 12 16 16 C 1.46839 * 110.99974 * 176.96584 * 11 10 9 17 17 H 1.09001 * 109.46888 * 294.18201 * 16 11 10 18 18 C 1.53002 * 109.46173 * 54.14796 * 16 11 10 19 19 H 1.09002 * 109.47441 * 300.74264 * 18 16 11 20 20 O 1.42904 * 109.47318 * 180.74155 * 18 16 11 21 21 C 1.50704 * 109.47221 * 60.74042 * 18 16 11 22 22 C 1.38239 * 119.99876 * 83.31956 * 21 18 16 23 23 C 1.38236 * 119.99863 * 179.79161 * 22 21 18 24 24 C 1.38235 * 119.99799 * 0.45998 * 23 22 21 25 25 C 1.38242 * 120.00101 * 359.77304 * 24 23 22 26 26 C 1.38230 * 120.00128 * 0.02562 * 25 24 23 27 27 C 1.53001 * 117.49632 * 325.66848 * 9 7 2 28 28 C 1.53004 * 117.49845 * 34.32594 * 9 7 2 29 29 H 0.96997 * 120.00258 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46839 * 154.41171 * 10 9 7 31 31 H 1.08995 * 109.47519 * 274.41542 * 10 9 7 32 32 H 1.09004 * 109.46308 * 305.85055 * 12 11 10 33 33 H 1.09005 * 109.46702 * 65.82075 * 12 11 10 34 34 H 1.09000 * 109.50481 * 180.87475 * 13 12 11 35 35 H 1.09000 * 109.53778 * 60.77971 * 13 12 11 36 36 H 1.08998 * 109.52199 * 297.74449 * 14 13 12 37 37 H 1.08998 * 109.57347 * 177.59289 * 14 13 12 38 38 H 1.09001 * 109.50793 * 182.40726 * 15 14 13 39 39 H 1.08999 * 109.50621 * 62.28524 * 15 14 13 40 40 H 0.96698 * 113.99587 * 299.99777 * 20 18 16 41 41 H 1.07996 * 119.99511 * 359.97438 * 22 21 18 42 42 H 1.07998 * 120.00013 * 180.25290 * 23 22 21 43 43 H 1.08006 * 120.00030 * 179.79011 * 24 23 22 44 44 H 1.07998 * 119.99512 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00074 * 179.97438 * 26 25 24 46 46 H 1.08997 * 117.49986 * 214.99882 * 27 9 7 47 47 H 1.08999 * 117.49802 * 0.02868 * 27 9 7 48 48 H 1.09004 * 117.49836 * 359.97438 * 28 9 7 49 49 H 1.08996 * 117.49461 * 144.99814 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0018 11 7 3.3364 -3.5186 0.7802 12 6 3.0110 -3.0072 2.1178 13 6 4.3015 -2.6301 2.8489 14 6 5.1997 -3.8653 2.9588 15 6 5.4838 -4.4066 1.5550 16 6 4.1590 -4.7322 0.8614 17 1 3.6277 -5.4937 1.4323 18 6 4.4372 -5.2548 -0.5494 19 1 3.4933 -5.4752 -1.0480 20 8 5.2234 -6.4455 -0.4700 21 6 5.1873 -4.2090 -1.3337 22 6 6.5601 -4.1043 -1.2092 23 6 7.2486 -3.1479 -1.9318 24 6 6.5633 -2.2901 -2.7716 25 6 5.1899 -2.3917 -2.8924 26 6 4.5019 -3.3508 -2.1730 27 6 -0.0724 -2.5508 0.7654 28 6 -0.0731 -2.5504 -0.7653 29 1 -0.4850 0.8400 0.0004 30 1 1.5581 -4.5849 0.4421 31 1 2.3865 -4.0153 -1.0266 32 1 2.3754 -2.1265 2.0252 33 1 2.4850 -3.7768 2.6829 34 1 4.0607 -2.2651 3.8474 35 1 4.8214 -1.8505 2.2921 36 1 4.6960 -4.6305 3.5493 37 1 6.1384 -3.5924 3.4409 38 1 6.0877 -5.3110 1.6289 39 1 6.0220 -3.6552 0.9772 40 1 6.0793 -6.3235 -0.0370 41 1 7.0949 -4.7716 -0.5497 42 1 8.3216 -3.0688 -1.8377 43 1 7.1008 -1.5406 -3.3337 44 1 4.6546 -1.7217 -3.5489 45 1 3.4289 -3.4299 -2.2670 46 1 -0.3266 -3.4835 1.2688 47 1 -0.3984 -1.6406 1.2688 48 1 -0.3995 -1.6400 -1.2682 49 1 -0.3276 -3.4830 -1.2690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878222858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:05 Heat of formation + Delta-G solvation = 15.617315 kcal Electronic energy + Delta-G solvation = -28744.138058 eV Core-core repulsion = 25251.040128 eV Total energy + Delta-G solvation = -3493.097929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.20331 -38.20019 -36.77592 -35.89962 -33.00809 -31.65424 -31.25885 -30.54211 -29.78696 -26.59240 -25.65886 -25.33614 -22.64175 -22.09166 -21.96949 -20.78776 -20.43087 -19.12761 -18.81390 -17.48505 -16.31774 -15.83617 -15.50349 -15.16057 -14.86733 -14.51751 -14.17557 -14.08405 -13.86591 -13.57480 -13.30603 -12.96692 -12.89958 -12.77838 -12.43077 -12.22259 -12.07906 -11.83959 -11.47450 -11.09513 -10.98664 -10.95836 -10.91521 -10.68813 -10.58113 -10.38639 -10.18751 -10.09138 -9.97856 -9.73222 -9.69536 -9.32428 -8.70391 -8.50484 -8.32999 -8.28487 -7.99435 -7.46552 -5.89802 -3.90923 1.69229 1.79256 3.29824 3.39620 3.45209 4.08730 4.31744 4.45553 4.70689 4.85476 4.99291 5.03850 5.13391 5.17889 5.25712 5.30234 5.41156 5.57840 5.60016 5.71796 5.78253 5.83734 5.88262 5.96292 6.02963 6.08318 6.09677 6.18308 6.27692 6.29118 6.37943 6.39705 6.41834 6.48958 6.55887 6.72665 6.76250 6.81632 6.90600 6.96652 6.97631 7.11787 7.25242 7.30216 7.35837 7.59583 7.71556 7.85392 7.99453 8.12957 8.24369 8.61875 9.11154 9.63032 11.06687 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.006225 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.873977 B = 4497.002495 C = 5148.868615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.052 3.948 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.446 4.446 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.094 3.906 11 N -0.498 5.498 12 C 0.056 3.944 13 C -0.115 4.115 14 C -0.116 4.116 15 C -0.119 4.119 16 C 0.058 3.942 17 H 0.040 0.960 18 C 0.148 3.852 19 H 0.107 0.893 20 O -0.558 6.558 21 C -0.089 4.089 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.113 4.113 26 C -0.078 4.078 27 C -0.194 4.194 28 C -0.189 4.189 29 H 0.255 0.745 30 H 0.009 0.991 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.012 0.988 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.369 0.631 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.036 0.964 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.572 -7.830 0.424 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.148 4.148 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.483 4.483 8 H 0.096 0.904 9 C 0.023 3.977 10 C -0.033 4.033 11 N -0.224 5.224 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.154 4.154 15 C -0.156 4.156 16 C -0.052 4.052 17 H 0.058 0.942 18 C 0.089 3.911 19 H 0.125 0.875 20 O -0.363 6.363 21 C -0.090 4.090 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.096 4.096 27 C -0.232 4.232 28 C -0.228 4.228 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.217 0.783 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.146 0.854 46 H 0.054 0.946 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.205 -7.600 -0.120 13.539 hybrid contribution 0.177 0.643 0.807 1.047 sum 11.381 -6.957 0.687 13.357 Atomic orbital electron populations 1.70036 1.05745 1.25547 1.51073 1.25043 0.94824 0.99067 0.95861 0.86575 0.80420 0.84051 0.77270 1.19578 1.21430 1.21450 1.20703 0.93515 0.87596 1.46522 0.90422 1.18985 0.85391 0.92716 1.00657 1.21797 0.89034 0.96255 0.96222 1.61780 1.18693 1.26359 1.15519 1.22246 0.96431 1.01313 0.87108 1.21576 0.96739 0.97395 0.99597 1.21535 0.99432 0.98196 0.96224 1.21765 0.96596 1.00525 0.96733 1.22213 0.95570 0.92613 0.94761 0.94221 1.20957 0.93593 0.82589 0.93987 0.87525 1.86610 1.33410 1.33724 1.82584 1.20172 0.93844 0.97814 0.97131 1.20695 0.93756 0.99134 0.99969 1.20915 0.99181 0.96588 0.97899 1.21057 0.94678 0.99221 0.99439 1.21130 0.94135 0.98115 0.99679 1.21075 1.00147 0.93984 0.94365 1.22918 1.06397 0.99418 0.94443 1.22831 1.05887 0.99633 0.94427 0.93481 0.97323 0.91816 0.86396 0.97025 0.92417 0.91169 0.92919 0.92584 0.92738 0.90034 0.78302 0.87136 0.86864 0.86833 0.86218 0.85364 0.94577 0.87309 0.87144 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.78 8.59 55.43 0.48 -23.31 16 2 C 0.05 1.35 5.27 -17.82 -0.09 1.26 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.45 -11.12 6.88 -34.44 -0.24 -11.35 16 8 H 0.08 1.99 7.15 -52.48 -0.38 1.61 16 9 C 0.02 0.53 1.42 -155.66 -0.22 0.31 16 10 C 0.09 1.84 4.35 -3.82 -0.02 1.82 16 11 N -0.50 -8.89 3.15 -226.69 -0.71 -9.60 16 12 C 0.06 1.03 4.86 -3.83 -0.02 1.02 16 13 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 14 C -0.12 -1.53 6.00 -26.61 -0.16 -1.69 16 15 C -0.12 -1.55 4.12 -26.65 -0.11 -1.66 16 16 C 0.06 0.88 1.87 -67.72 -0.13 0.75 16 17 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 18 C 0.15 2.16 2.79 -27.88 -0.08 2.09 16 19 H 0.11 1.67 6.26 -51.93 -0.32 1.35 16 20 O -0.56 -7.52 13.12 -35.23 -0.46 -7.98 16 21 C -0.09 -1.33 4.29 -104.62 -0.45 -1.78 16 22 C -0.12 -1.55 7.16 -39.58 -0.28 -1.84 16 23 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 24 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 25 C -0.11 -1.74 10.05 -39.58 -0.40 -2.14 16 26 C -0.08 -1.27 9.01 -39.58 -0.36 -1.63 16 27 C -0.19 -4.64 9.19 -26.69 -0.25 -4.88 16 28 C -0.19 -4.54 9.38 -26.69 -0.25 -4.79 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.01 0.17 7.90 -51.93 -0.41 -0.24 16 31 H 0.06 1.20 3.81 -51.93 -0.20 1.00 16 32 H 0.12 2.57 5.26 -51.93 -0.27 2.30 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.58 6.83 -51.93 -0.35 0.23 16 39 H 0.08 1.16 5.75 -51.93 -0.30 0.86 16 40 H 0.37 3.79 5.76 45.56 0.26 4.06 16 41 H 0.11 1.19 6.15 -52.49 -0.32 0.87 16 42 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 44 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.13 2.22 5.86 -52.49 -0.31 1.91 16 46 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 47 H 0.11 2.89 6.28 -51.93 -0.33 2.56 16 48 H 0.11 2.94 6.28 -51.93 -0.33 2.61 16 49 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -26.90 359.36 -11.34 -38.24 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -7.04 Total: 12.21 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -4.00 Total: -30.70 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: -0.24 Total: -32.91 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.46 Total: -7.98 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.90 -11.34 -38.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878222858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.859 kcal (2) G-P(sol) polarization free energy of solvation -26.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds