Wall clock time and date at job start Tue Mar 31 2020 12:01:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86795 * 119.99922 * 2 1
4 4 H 1.48492 * 109.47237 * 180.02562 * 3 2 1
5 5 H 1.48511 * 109.46990 * 300.00451 * 3 2 1
6 6 H 1.48496 * 109.47358 * 60.00127 * 3 2 1
7 7 C 1.37873 * 119.99758 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00025 * 179.97438 * 7 2 1
9 9 C 1.50699 * 120.00474 * 359.97438 * 7 2 1
10 10 C 1.52997 * 115.55265 * 179.97438 * 9 7 2
11 11 N 1.46906 * 109.47036 * 34.41538 * 10 9 7
12 12 C 1.46847 * 110.99683 * 52.76150 * 11 10 9
13 13 C 1.53037 * 109.52218 * 185.83909 * 12 11 10
14 14 C 1.53118 * 109.27753 * 300.82010 * 13 12 11
15 15 C 1.53113 * 109.16098 * 57.65431 * 14 13 12
16 16 C 1.46839 * 110.99974 * 176.96584 * 11 10 9
17 17 H 1.09001 * 109.46888 * 294.18201 * 16 11 10
18 18 C 1.53002 * 109.46173 * 54.14796 * 16 11 10
19 19 H 1.09002 * 109.47441 * 300.74264 * 18 16 11
20 20 O 1.42904 * 109.47318 * 180.74155 * 18 16 11
21 21 C 1.50704 * 109.47221 * 60.74042 * 18 16 11
22 22 C 1.38239 * 119.99876 * 83.31956 * 21 18 16
23 23 C 1.38236 * 119.99863 * 179.79161 * 22 21 18
24 24 C 1.38235 * 119.99799 * 0.45998 * 23 22 21
25 25 C 1.38242 * 120.00101 * 359.77304 * 24 23 22
26 26 C 1.38230 * 120.00128 * 0.02562 * 25 24 23
27 27 C 1.53001 * 117.49632 * 325.66848 * 9 7 2
28 28 C 1.53004 * 117.49845 * 34.32594 * 9 7 2
29 29 H 0.96997 * 120.00258 * 359.97438 * 1 2 3
30 30 H 1.08998 * 109.46839 * 154.41171 * 10 9 7
31 31 H 1.08995 * 109.47519 * 274.41542 * 10 9 7
32 32 H 1.09004 * 109.46308 * 305.85055 * 12 11 10
33 33 H 1.09005 * 109.46702 * 65.82075 * 12 11 10
34 34 H 1.09000 * 109.50481 * 180.87475 * 13 12 11
35 35 H 1.09000 * 109.53778 * 60.77971 * 13 12 11
36 36 H 1.08998 * 109.52199 * 297.74449 * 14 13 12
37 37 H 1.08998 * 109.57347 * 177.59289 * 14 13 12
38 38 H 1.09001 * 109.50793 * 182.40726 * 15 14 13
39 39 H 1.08999 * 109.50621 * 62.28524 * 15 14 13
40 40 H 0.96698 * 113.99587 * 299.99777 * 20 18 16
41 41 H 1.07996 * 119.99511 * 359.97438 * 22 21 18
42 42 H 1.07998 * 120.00013 * 180.25290 * 23 22 21
43 43 H 1.08006 * 120.00030 * 179.79011 * 24 23 22
44 44 H 1.07998 * 119.99512 * 180.02562 * 25 24 23
45 45 H 1.07998 * 120.00074 * 179.97438 * 26 25 24
46 46 H 1.08997 * 117.49986 * 214.99882 * 27 9 7
47 47 H 1.08999 * 117.49802 * 0.02868 * 27 9 7
48 48 H 1.09004 * 117.49836 * 359.97438 * 28 9 7
49 49 H 1.08996 * 117.49461 * 144.99814 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8902 2.3965 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.1165 -3.7608 -0.0018
11 7 3.3364 -3.5186 0.7802
12 6 3.0110 -3.0072 2.1178
13 6 4.3015 -2.6301 2.8489
14 6 5.1997 -3.8653 2.9588
15 6 5.4838 -4.4066 1.5550
16 6 4.1590 -4.7322 0.8614
17 1 3.6277 -5.4937 1.4323
18 6 4.4372 -5.2548 -0.5494
19 1 3.4933 -5.4752 -1.0480
20 8 5.2234 -6.4455 -0.4700
21 6 5.1873 -4.2090 -1.3337
22 6 6.5601 -4.1043 -1.2092
23 6 7.2486 -3.1479 -1.9318
24 6 6.5633 -2.2901 -2.7716
25 6 5.1899 -2.3917 -2.8924
26 6 4.5019 -3.3508 -2.1730
27 6 -0.0724 -2.5508 0.7654
28 6 -0.0731 -2.5504 -0.7653
29 1 -0.4850 0.8400 0.0004
30 1 1.5581 -4.5849 0.4421
31 1 2.3865 -4.0153 -1.0266
32 1 2.3754 -2.1265 2.0252
33 1 2.4850 -3.7768 2.6829
34 1 4.0607 -2.2651 3.8474
35 1 4.8214 -1.8505 2.2921
36 1 4.6960 -4.6305 3.5493
37 1 6.1384 -3.5924 3.4409
38 1 6.0877 -5.3110 1.6289
39 1 6.0220 -3.6552 0.9772
40 1 6.0793 -6.3235 -0.0370
41 1 7.0949 -4.7716 -0.5497
42 1 8.3216 -3.0688 -1.8377
43 1 7.1008 -1.5406 -3.3337
44 1 4.6546 -1.7217 -3.5489
45 1 3.4289 -3.4299 -2.2670
46 1 -0.3266 -3.4835 1.2688
47 1 -0.3984 -1.6406 1.2688
48 1 -0.3995 -1.6400 -1.2682
49 1 -0.3276 -3.4830 -1.2690
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000878222858.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:01:05
Heat of formation + Delta-G solvation = 15.617315 kcal
Electronic energy + Delta-G solvation = -28744.138058 eV
Core-core repulsion = 25251.040128 eV
Total energy + Delta-G solvation = -3493.097929 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-40.20331 -38.20019 -36.77592 -35.89962 -33.00809 -31.65424 -31.25885 -30.54211
-29.78696 -26.59240 -25.65886 -25.33614 -22.64175 -22.09166 -21.96949 -20.78776
-20.43087 -19.12761 -18.81390 -17.48505 -16.31774 -15.83617 -15.50349 -15.16057
-14.86733 -14.51751 -14.17557 -14.08405 -13.86591 -13.57480 -13.30603 -12.96692
-12.89958 -12.77838 -12.43077 -12.22259 -12.07906 -11.83959 -11.47450 -11.09513
-10.98664 -10.95836 -10.91521 -10.68813 -10.58113 -10.38639 -10.18751 -10.09138
-9.97856 -9.73222 -9.69536 -9.32428 -8.70391 -8.50484 -8.32999 -8.28487
-7.99435 -7.46552 -5.89802 -3.90923 1.69229 1.79256 3.29824 3.39620
3.45209 4.08730 4.31744 4.45553 4.70689 4.85476 4.99291 5.03850
5.13391 5.17889 5.25712 5.30234 5.41156 5.57840 5.60016 5.71796
5.78253 5.83734 5.88262 5.96292 6.02963 6.08318 6.09677 6.18308
6.27692 6.29118 6.37943 6.39705 6.41834 6.48958 6.55887 6.72665
6.76250 6.81632 6.90600 6.96652 6.97631 7.11787 7.25242 7.30216
7.35837 7.59583 7.71556 7.85392 7.99453 8.12957 8.24369 8.61875
9.11154 9.63032 11.06687
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.011708 B = 0.006225 C = 0.005437
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2390.873977 B = 4497.002495 C = 5148.868615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.052 3.948
3 Si 0.888 3.112
4 H -0.271 1.271
5 H -0.288 1.288
6 H -0.288 1.288
7 C -0.446 4.446
8 H 0.078 0.922
9 C 0.023 3.977
10 C 0.094 3.906
11 N -0.498 5.498
12 C 0.056 3.944
13 C -0.115 4.115
14 C -0.116 4.116
15 C -0.119 4.119
16 C 0.058 3.942
17 H 0.040 0.960
18 C 0.148 3.852
19 H 0.107 0.893
20 O -0.558 6.558
21 C -0.089 4.089
22 C -0.118 4.118
23 C -0.128 4.128
24 C -0.126 4.126
25 C -0.113 4.113
26 C -0.078 4.078
27 C -0.194 4.194
28 C -0.189 4.189
29 H 0.255 0.745
30 H 0.009 0.991
31 H 0.064 0.936
32 H 0.118 0.882
33 H 0.012 0.988
34 H 0.057 0.943
35 H 0.070 0.930
36 H 0.052 0.948
37 H 0.055 0.945
38 H 0.054 0.946
39 H 0.081 0.919
40 H 0.369 0.631
41 H 0.111 0.889
42 H 0.113 0.887
43 H 0.114 0.886
44 H 0.120 0.880
45 H 0.129 0.871
46 H 0.036 0.964
47 H 0.109 0.891
48 H 0.110 0.890
49 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.572 -7.830 0.424 13.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.524 5.524
2 C -0.148 4.148
3 Si 0.717 3.283
4 H -0.196 1.196
5 H -0.214 1.214
6 H -0.214 1.214
7 C -0.483 4.483
8 H 0.096 0.904
9 C 0.023 3.977
10 C -0.033 4.033
11 N -0.224 5.224
12 C -0.071 4.071
13 C -0.153 4.153
14 C -0.154 4.154
15 C -0.156 4.156
16 C -0.052 4.052
17 H 0.058 0.942
18 C 0.089 3.911
19 H 0.125 0.875
20 O -0.363 6.363
21 C -0.090 4.090
22 C -0.136 4.136
23 C -0.146 4.146
24 C -0.144 4.144
25 C -0.131 4.131
26 C -0.096 4.096
27 C -0.232 4.232
28 C -0.228 4.228
29 H 0.065 0.935
30 H 0.027 0.973
31 H 0.082 0.918
32 H 0.136 0.864
33 H 0.030 0.970
34 H 0.076 0.924
35 H 0.088 0.912
36 H 0.071 0.929
37 H 0.074 0.926
38 H 0.073 0.927
39 H 0.100 0.900
40 H 0.217 0.783
41 H 0.129 0.871
42 H 0.131 0.869
43 H 0.132 0.868
44 H 0.138 0.862
45 H 0.146 0.854
46 H 0.054 0.946
47 H 0.127 0.873
48 H 0.129 0.871
49 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 11.205 -7.600 -0.120 13.539
hybrid contribution 0.177 0.643 0.807 1.047
sum 11.381 -6.957 0.687 13.357
Atomic orbital electron populations
1.70036 1.05745 1.25547 1.51073 1.25043 0.94824 0.99067 0.95861
0.86575 0.80420 0.84051 0.77270 1.19578 1.21430 1.21450 1.20703
0.93515 0.87596 1.46522 0.90422 1.18985 0.85391 0.92716 1.00657
1.21797 0.89034 0.96255 0.96222 1.61780 1.18693 1.26359 1.15519
1.22246 0.96431 1.01313 0.87108 1.21576 0.96739 0.97395 0.99597
1.21535 0.99432 0.98196 0.96224 1.21765 0.96596 1.00525 0.96733
1.22213 0.95570 0.92613 0.94761 0.94221 1.20957 0.93593 0.82589
0.93987 0.87525 1.86610 1.33410 1.33724 1.82584 1.20172 0.93844
0.97814 0.97131 1.20695 0.93756 0.99134 0.99969 1.20915 0.99181
0.96588 0.97899 1.21057 0.94678 0.99221 0.99439 1.21130 0.94135
0.98115 0.99679 1.21075 1.00147 0.93984 0.94365 1.22918 1.06397
0.99418 0.94443 1.22831 1.05887 0.99633 0.94427 0.93481 0.97323
0.91816 0.86396 0.97025 0.92417 0.91169 0.92919 0.92584 0.92738
0.90034 0.78302 0.87136 0.86864 0.86833 0.86218 0.85364 0.94577
0.87309 0.87144 0.94372
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.78 8.59 55.43 0.48 -23.31 16
2 C 0.05 1.35 5.27 -17.82 -0.09 1.26 16
3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16
4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16
5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
7 C -0.45 -11.12 6.88 -34.44 -0.24 -11.35 16
8 H 0.08 1.99 7.15 -52.48 -0.38 1.61 16
9 C 0.02 0.53 1.42 -155.66 -0.22 0.31 16
10 C 0.09 1.84 4.35 -3.82 -0.02 1.82 16
11 N -0.50 -8.89 3.15 -226.69 -0.71 -9.60 16
12 C 0.06 1.03 4.86 -3.83 -0.02 1.02 16
13 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16
14 C -0.12 -1.53 6.00 -26.61 -0.16 -1.69 16
15 C -0.12 -1.55 4.12 -26.65 -0.11 -1.66 16
16 C 0.06 0.88 1.87 -67.72 -0.13 0.75 16
17 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16
18 C 0.15 2.16 2.79 -27.88 -0.08 2.09 16
19 H 0.11 1.67 6.26 -51.93 -0.32 1.35 16
20 O -0.56 -7.52 13.12 -35.23 -0.46 -7.98 16
21 C -0.09 -1.33 4.29 -104.62 -0.45 -1.78 16
22 C -0.12 -1.55 7.16 -39.58 -0.28 -1.84 16
23 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16
24 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16
25 C -0.11 -1.74 10.05 -39.58 -0.40 -2.14 16
26 C -0.08 -1.27 9.01 -39.58 -0.36 -1.63 16
27 C -0.19 -4.64 9.19 -26.69 -0.25 -4.88 16
28 C -0.19 -4.54 9.38 -26.69 -0.25 -4.79 16
29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16
30 H 0.01 0.17 7.90 -51.93 -0.41 -0.24 16
31 H 0.06 1.20 3.81 -51.93 -0.20 1.00 16
32 H 0.12 2.57 5.26 -51.93 -0.27 2.30 16
33 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16
34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
38 H 0.05 0.58 6.83 -51.93 -0.35 0.23 16
39 H 0.08 1.16 5.75 -51.93 -0.30 0.86 16
40 H 0.37 3.79 5.76 45.56 0.26 4.06 16
41 H 0.11 1.19 6.15 -52.49 -0.32 0.87 16
42 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16
43 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16
44 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16
45 H 0.13 2.22 5.86 -52.49 -0.31 1.91 16
46 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16
47 H 0.11 2.89 6.28 -51.93 -0.33 2.56 16
48 H 0.11 2.94 6.28 -51.93 -0.33 2.61 16
49 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 359.36 15.07 5.42 5.42
Total: -1.00 -26.90 359.36 -11.34 -38.24
By element:
Atomic # 1 Polarization: 19.25 SS G_CDS: -7.04 Total: 12.21 kcal
Atomic # 6 Polarization: -26.70 SS G_CDS: -4.00 Total: -30.70 kcal
Atomic # 7 Polarization: -32.67 SS G_CDS: -0.24 Total: -32.91 kcal
Atomic # 8 Polarization: -7.52 SS G_CDS: -0.46 Total: -7.98 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -26.90 -11.34 -38.24 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000878222858.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.859 kcal
(2) G-P(sol) polarization free energy of solvation -26.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.961 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds