Wall clock time and date at job start Tue Mar 31 2020 12:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99922 * 2 1 4 4 H 1.48492 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46990 * 300.00451 * 3 2 1 6 6 H 1.48496 * 109.47358 * 60.00127 * 3 2 1 7 7 C 1.37873 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00474 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.55265 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47036 * 34.41538 * 10 9 7 12 12 C 1.46847 * 110.99683 * 52.76150 * 11 10 9 13 13 C 1.53037 * 109.52218 * 185.83909 * 12 11 10 14 14 C 1.53118 * 109.27753 * 300.82010 * 13 12 11 15 15 C 1.53113 * 109.16098 * 57.65431 * 14 13 12 16 16 C 1.46839 * 110.99974 * 176.96584 * 11 10 9 17 17 H 1.09001 * 109.46888 * 294.18201 * 16 11 10 18 18 C 1.53002 * 109.46173 * 54.14796 * 16 11 10 19 19 H 1.09002 * 109.47441 * 300.74264 * 18 16 11 20 20 O 1.42904 * 109.47318 * 180.74155 * 18 16 11 21 21 C 1.50704 * 109.47221 * 60.74042 * 18 16 11 22 22 C 1.38239 * 119.99876 * 83.31956 * 21 18 16 23 23 C 1.38236 * 119.99863 * 179.79161 * 22 21 18 24 24 C 1.38235 * 119.99799 * 0.45998 * 23 22 21 25 25 C 1.38242 * 120.00101 * 359.77304 * 24 23 22 26 26 C 1.38230 * 120.00128 * 0.02562 * 25 24 23 27 27 C 1.53001 * 117.49632 * 325.66848 * 9 7 2 28 28 C 1.53004 * 117.49845 * 34.32594 * 9 7 2 29 29 H 0.96997 * 120.00258 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46839 * 154.41171 * 10 9 7 31 31 H 1.08995 * 109.47519 * 274.41542 * 10 9 7 32 32 H 1.09004 * 109.46308 * 305.85055 * 12 11 10 33 33 H 1.09005 * 109.46702 * 65.82075 * 12 11 10 34 34 H 1.09000 * 109.50481 * 180.87475 * 13 12 11 35 35 H 1.09000 * 109.53778 * 60.77971 * 13 12 11 36 36 H 1.08998 * 109.52199 * 297.74449 * 14 13 12 37 37 H 1.08998 * 109.57347 * 177.59289 * 14 13 12 38 38 H 1.09001 * 109.50793 * 182.40726 * 15 14 13 39 39 H 1.08999 * 109.50621 * 62.28524 * 15 14 13 40 40 H 0.96698 * 113.99587 * 299.99777 * 20 18 16 41 41 H 1.07996 * 119.99511 * 359.97438 * 22 21 18 42 42 H 1.07998 * 120.00013 * 180.25290 * 23 22 21 43 43 H 1.08006 * 120.00030 * 179.79011 * 24 23 22 44 44 H 1.07998 * 119.99512 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00074 * 179.97438 * 26 25 24 46 46 H 1.08997 * 117.49986 * 214.99882 * 27 9 7 47 47 H 1.08999 * 117.49802 * 0.02868 * 27 9 7 48 48 H 1.09004 * 117.49836 * 359.97438 * 28 9 7 49 49 H 1.08996 * 117.49461 * 144.99814 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0018 11 7 3.3364 -3.5186 0.7802 12 6 3.0110 -3.0072 2.1178 13 6 4.3015 -2.6301 2.8489 14 6 5.1997 -3.8653 2.9588 15 6 5.4838 -4.4066 1.5550 16 6 4.1590 -4.7322 0.8614 17 1 3.6277 -5.4937 1.4323 18 6 4.4372 -5.2548 -0.5494 19 1 3.4933 -5.4752 -1.0480 20 8 5.2234 -6.4455 -0.4700 21 6 5.1873 -4.2090 -1.3337 22 6 6.5601 -4.1043 -1.2092 23 6 7.2486 -3.1479 -1.9318 24 6 6.5633 -2.2901 -2.7716 25 6 5.1899 -2.3917 -2.8924 26 6 4.5019 -3.3508 -2.1730 27 6 -0.0724 -2.5508 0.7654 28 6 -0.0731 -2.5504 -0.7653 29 1 -0.4850 0.8400 0.0004 30 1 1.5581 -4.5849 0.4421 31 1 2.3865 -4.0153 -1.0266 32 1 2.3754 -2.1265 2.0252 33 1 2.4850 -3.7768 2.6829 34 1 4.0607 -2.2651 3.8474 35 1 4.8214 -1.8505 2.2921 36 1 4.6960 -4.6305 3.5493 37 1 6.1384 -3.5924 3.4409 38 1 6.0877 -5.3110 1.6289 39 1 6.0220 -3.6552 0.9772 40 1 6.0793 -6.3235 -0.0370 41 1 7.0949 -4.7716 -0.5497 42 1 8.3216 -3.0688 -1.8377 43 1 7.1008 -1.5406 -3.3337 44 1 4.6546 -1.7217 -3.5489 45 1 3.4289 -3.4299 -2.2670 46 1 -0.3266 -3.4835 1.2688 47 1 -0.3984 -1.6406 1.2688 48 1 -0.3995 -1.6400 -1.2682 49 1 -0.3276 -3.4830 -1.2690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878222858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:04 Heat of formation + Delta-G solvation = 2.134926 kcal Electronic energy + Delta-G solvation = -28744.722698 eV Core-core repulsion = 25251.040128 eV Total energy + Delta-G solvation = -3493.682570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40424 -39.49578 -38.27219 -37.22580 -34.40902 -33.31599 -32.68699 -31.63125 -30.95652 -28.15427 -27.28169 -26.77801 -23.98109 -23.28957 -23.12707 -22.61844 -21.69023 -20.70305 -20.31088 -18.58168 -17.97198 -17.15114 -16.96603 -16.60452 -16.30344 -15.68304 -15.63536 -15.32624 -15.17254 -15.04132 -14.68985 -14.31451 -14.10997 -14.03229 -13.70958 -13.67908 -13.33703 -13.25007 -12.95406 -12.85133 -12.56168 -12.41926 -12.21745 -12.11952 -12.05358 -11.92100 -11.78057 -11.61016 -11.45282 -11.18382 -10.98403 -10.82734 -10.60536 -10.21220 -9.95501 -9.59792 -9.41453 -8.90685 -7.91261 -5.95719 0.60135 0.69647 1.39722 1.45197 1.55236 2.48679 2.94240 3.04829 3.15738 3.59703 3.71857 3.84429 3.93751 3.97995 4.11481 4.17474 4.25222 4.31135 4.38540 4.43688 4.47709 4.53700 4.59425 4.67277 4.74010 4.78758 4.82897 4.85500 4.93948 5.02072 5.05854 5.14104 5.15189 5.18888 5.24300 5.29938 5.30753 5.34001 5.43836 5.55580 5.62409 5.69533 5.72380 5.79254 5.85705 6.03505 6.21879 6.27207 6.35480 6.51749 6.66630 6.78219 7.08655 7.59340 9.03761 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.006225 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.873977 B = 4497.002495 C = 5148.868615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.007 3.993 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.438 4.438 8 H 0.070 0.930 9 C 0.026 3.974 10 C 0.103 3.897 11 N -0.502 5.502 12 C 0.059 3.941 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.059 3.941 17 H 0.036 0.964 18 C 0.158 3.842 19 H 0.089 0.911 20 O -0.559 6.559 21 C -0.097 4.097 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.102 4.102 27 C -0.192 4.192 28 C -0.194 4.194 29 H 0.251 0.749 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.009 0.991 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.385 0.615 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.050 0.950 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.985 -9.202 1.238 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.476 4.476 8 H 0.088 0.912 9 C 0.026 3.974 10 C -0.024 4.024 11 N -0.228 5.228 12 C -0.068 4.068 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.050 4.050 17 H 0.053 0.947 18 C 0.098 3.902 19 H 0.106 0.894 20 O -0.367 6.367 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.153 4.153 26 C -0.120 4.120 27 C -0.230 4.230 28 C -0.232 4.232 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.028 0.972 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.236 0.764 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.152 0.848 44 H 0.134 0.866 45 H 0.124 0.876 46 H 0.069 0.931 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.639 -8.977 0.699 17.187 hybrid contribution -0.870 1.043 0.543 1.463 sum 13.769 -7.934 1.242 15.940 Atomic orbital electron populations 1.70180 1.06688 1.25651 1.52301 1.25626 0.95445 1.01613 0.96307 0.85740 0.79461 0.81082 0.76758 1.19244 1.21755 1.21608 1.20775 0.93122 0.88453 1.45247 0.91176 1.19081 0.85357 0.93717 0.99270 1.21621 0.89451 0.94165 0.97171 1.61737 1.17778 1.28224 1.15012 1.22094 0.97452 0.99543 0.87738 1.21529 0.95651 0.98459 0.99295 1.21508 0.99854 0.96803 0.96643 1.21784 0.95362 1.01935 0.96102 1.22288 0.96153 0.91083 0.95447 0.94665 1.20686 0.93271 0.82883 0.93357 0.89355 1.86601 1.34362 1.32846 1.82886 1.20228 0.94847 0.97634 0.97067 1.21050 0.92941 0.99376 0.99929 1.21330 1.00806 0.95568 0.96682 1.21354 0.93950 0.99889 0.99718 1.21259 0.95371 0.98416 1.00267 1.21022 0.99345 0.95554 0.96127 1.22739 1.07349 0.98730 0.94189 1.22722 1.06972 0.99233 0.94315 0.93957 0.97479 0.91175 0.90413 0.97243 0.91495 0.92764 0.92245 0.90181 0.89195 0.90685 0.76422 0.83981 0.83666 0.84815 0.86636 0.87622 0.93125 0.90094 0.89918 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.70 8.59 21.45 0.18 -50.52 16 2 C 0.01 0.39 5.27 84.65 0.45 0.84 16 3 Si 0.94 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.44 -22.49 6.88 25.60 0.18 -22.32 16 8 H 0.07 3.67 7.15 -2.91 -0.02 3.65 16 9 C 0.03 1.25 1.42 -52.93 -0.08 1.17 16 10 C 0.10 4.10 4.35 86.30 0.38 4.47 16 11 N -0.50 -17.74 3.15 -871.11 -2.74 -20.48 16 12 C 0.06 2.18 4.86 86.33 0.42 2.60 16 13 C -0.11 -3.33 6.09 30.65 0.19 -3.14 16 14 C -0.11 -2.52 6.00 30.67 0.18 -2.33 16 15 C -0.11 -2.55 4.12 30.65 0.13 -2.43 16 16 C 0.06 1.68 1.87 44.94 0.08 1.76 16 17 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 18 C 0.16 4.34 2.79 29.85 0.08 4.43 16 19 H 0.09 2.75 6.26 -2.39 -0.01 2.73 16 20 O -0.56 -13.26 13.12 -148.98 -1.95 -15.21 16 21 C -0.10 -2.76 4.29 -19.86 -0.09 -2.84 16 22 C -0.12 -2.64 7.16 22.27 0.16 -2.48 16 23 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 24 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 25 C -0.14 -4.18 10.05 22.27 0.22 -3.95 16 26 C -0.10 -3.38 9.01 22.27 0.20 -3.18 16 27 C -0.19 -9.48 9.19 30.62 0.28 -9.20 16 28 C -0.19 -9.59 9.38 30.62 0.29 -9.30 16 29 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 30 H 0.01 0.28 7.90 -2.39 -0.02 0.26 16 31 H 0.07 2.71 3.81 -2.39 -0.01 2.70 16 32 H 0.08 3.48 5.26 -2.38 -0.01 3.47 16 33 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.41 6.83 -2.39 -0.02 1.40 16 39 H 0.07 1.83 5.75 -2.39 -0.01 1.81 16 40 H 0.38 6.08 5.76 -74.06 -0.43 5.65 16 41 H 0.14 2.29 6.15 -2.91 -0.02 2.27 16 42 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 44 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.11 3.85 5.86 -2.91 -0.02 3.83 16 46 H 0.05 2.31 8.05 -2.39 -0.02 2.29 16 47 H 0.08 4.49 6.28 -2.39 -0.02 4.47 16 48 H 0.08 4.59 6.28 -2.38 -0.01 4.58 16 49 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -59.93 359.36 1.56 -58.37 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.53 Total: 33.81 kcal Atomic # 6 Polarization: -55.17 SS G_CDS: 3.52 Total: -51.65 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -2.56 Total: -71.00 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.95 Total: -15.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -59.93 1.56 -58.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878222858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.507 kcal (2) G-P(sol) polarization free energy of solvation -59.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds