Wall clock time and date at job start Tue Mar 31 2020 12:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99748 * 2 1 4 4 H 1.48505 * 109.47226 * 239.99947 * 3 2 1 5 5 H 1.48494 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46894 * 120.00319 * 3 2 1 7 7 C 1.37875 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.53000 * 115.55142 * 174.00558 * 9 7 2 11 11 N 1.46902 * 109.47047 * 29.87638 * 10 9 7 12 12 C 1.46849 * 110.99805 * 271.85693 * 11 10 9 13 13 C 1.53035 * 109.52610 * 174.15967 * 12 11 10 14 14 C 1.53123 * 109.27952 * 59.17506 * 13 12 11 15 15 C 1.53121 * 109.16160 * 302.35183 * 14 13 12 16 16 C 1.46843 * 111.00258 * 147.64379 * 11 10 9 17 17 H 1.08999 * 109.44990 * 65.82867 * 16 11 10 18 18 C 1.52997 * 109.46515 * 305.85526 * 16 11 10 19 19 H 1.09001 * 109.46961 * 55.65835 * 18 16 11 20 20 O 1.42898 * 109.47250 * 175.66362 * 18 16 11 21 21 C 1.50703 * 109.47052 * 295.66537 * 18 16 11 22 22 C 1.38236 * 119.99606 * 280.41585 * 21 18 16 23 23 C 1.38234 * 119.99769 * 179.76831 * 22 21 18 24 24 C 1.38230 * 120.00012 * 0.49940 * 23 22 21 25 25 C 1.38240 * 119.99952 * 359.75422 * 24 23 22 26 26 C 1.38229 * 120.00132 * 100.68788 * 21 18 16 27 27 C 1.52999 * 117.50400 * 319.68233 * 9 7 2 28 28 C 1.53003 * 117.50065 * 28.34257 * 9 7 2 29 29 H 0.96997 * 120.00151 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47600 * 269.87665 * 10 9 7 31 31 H 1.09000 * 109.46971 * 149.87227 * 10 9 7 32 32 H 1.09002 * 109.46302 * 54.14078 * 12 11 10 33 33 H 1.09005 * 109.46332 * 294.17328 * 12 11 10 34 34 H 1.08997 * 109.50282 * 299.23882 * 13 12 11 35 35 H 1.08994 * 109.53513 * 179.13728 * 13 12 11 36 36 H 1.08995 * 109.52626 * 182.44482 * 14 13 12 37 37 H 1.09007 * 109.57015 * 62.28025 * 14 13 12 38 38 H 1.09000 * 109.50225 * 297.71416 * 15 14 13 39 39 H 1.08996 * 109.50348 * 177.59633 * 15 14 13 40 40 H 0.96696 * 114.00437 * 59.99675 * 20 18 16 41 41 H 1.08002 * 120.00096 * 359.97438 * 22 21 18 42 42 H 1.08000 * 119.99720 * 180.22761 * 23 22 21 43 43 H 1.08003 * 120.00055 * 179.71998 * 24 23 22 44 44 H 1.08000 * 119.99763 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00536 * 359.97438 * 26 21 18 46 46 H 1.08998 * 117.50132 * 215.00392 * 27 9 7 47 47 H 1.09009 * 117.49563 * 0.02562 * 27 9 7 48 48 H 1.09011 * 117.49376 * 359.97155 * 28 9 7 49 49 H 1.08996 * 117.50578 * 144.99152 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.1101 -3.7570 -0.1453 11 7 3.4354 -3.5149 0.4402 12 6 4.3515 -2.9376 -0.5519 13 6 5.6715 -2.5649 0.1267 14 6 6.2902 -3.8184 0.7518 15 6 5.2968 -4.4273 1.7453 16 6 3.9876 -4.7460 1.0197 17 1 4.1790 -5.4671 0.2251 18 6 2.9848 -5.3362 2.0131 19 1 2.0283 -5.4925 1.5143 20 8 3.4772 -6.5856 2.5014 21 6 2.8002 -4.3837 3.1663 22 6 3.7378 -4.3370 4.1810 23 6 3.5709 -3.4599 5.2363 24 6 2.4612 -2.6370 5.2822 25 6 1.5209 -2.6874 4.2702 26 6 1.6905 -3.5608 3.2122 27 6 0.0021 -2.5939 0.8780 28 6 -0.1368 -2.5136 -0.6443 29 1 -0.4850 0.8400 0.0004 30 1 2.2189 -4.0031 -1.2015 31 1 1.6297 -4.5866 0.3735 32 1 3.9012 -2.0447 -0.9856 33 1 4.5412 -3.6674 -1.3390 34 1 5.4844 -1.8248 0.9048 35 1 6.3570 -2.1506 -0.6124 36 1 7.2088 -3.5499 1.2734 37 1 6.5141 -4.5439 -0.0303 38 1 5.1038 -3.7164 2.5487 39 1 5.7145 -5.3438 2.1620 40 1 4.3273 -6.5221 2.9579 41 1 4.6024 -4.9834 4.1475 42 1 4.3053 -3.4208 6.0272 43 1 2.3286 -1.9549 6.1091 44 1 0.6537 -2.0447 4.3063 45 1 0.9559 -3.6001 2.4215 46 1 -0.2077 -3.5523 1.3529 47 1 -0.2750 -1.7120 1.4557 48 1 -0.5051 -1.5789 -1.0674 49 1 -0.4380 -3.4192 -1.1709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878222859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:10 Heat of formation + Delta-G solvation = 32.351452 kcal Electronic energy + Delta-G solvation = -29008.390089 eV Core-core repulsion = 25516.017806 eV Total energy + Delta-G solvation = -3492.372283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.19642 -38.07546 -36.71314 -35.98053 -32.99153 -31.66370 -31.37455 -30.43181 -29.74611 -26.44785 -25.68373 -25.43613 -22.75878 -22.00982 -21.91899 -20.76568 -20.51257 -19.06163 -18.87329 -17.34260 -16.39364 -15.66223 -15.60407 -15.11302 -15.01854 -14.40068 -14.29837 -14.02883 -13.77268 -13.61078 -13.22649 -12.99847 -12.82639 -12.72431 -12.55804 -12.05160 -12.02595 -11.60795 -11.45892 -11.15290 -11.04980 -10.98305 -10.88815 -10.67871 -10.60292 -10.43402 -10.25599 -10.00770 -9.84976 -9.66735 -9.50252 -9.30354 -8.69232 -8.34720 -8.19798 -8.17545 -7.95332 -7.46365 -5.84520 -3.88186 1.82314 1.95097 3.33129 3.38529 3.41642 4.18097 4.33599 4.46614 4.72357 4.89803 4.99778 5.10692 5.15907 5.23155 5.27314 5.39563 5.44915 5.55542 5.64807 5.70267 5.82795 5.87256 5.93124 5.94506 6.03324 6.09741 6.13766 6.17631 6.19537 6.35204 6.41468 6.42596 6.46925 6.50679 6.60643 6.69792 6.74727 6.81872 6.88320 6.97949 7.12496 7.15105 7.25553 7.27206 7.52334 7.62905 7.72785 7.84714 7.98735 8.09375 8.34391 8.65963 9.08857 9.66284 11.09565 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.006538 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.036935 B = 4281.674602 C = 4815.800515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.054 3.946 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.453 4.453 8 H 0.079 0.921 9 C 0.037 3.963 10 C 0.089 3.911 11 N -0.496 5.496 12 C 0.050 3.950 13 C -0.117 4.117 14 C -0.115 4.115 15 C -0.120 4.120 16 C 0.059 3.941 17 H 0.039 0.961 18 C 0.145 3.855 19 H 0.111 0.889 20 O -0.558 6.558 21 C -0.093 4.093 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.086 4.086 27 C -0.191 4.191 28 C -0.200 4.200 29 H 0.255 0.745 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.368 0.632 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.148 0.852 46 H 0.042 0.958 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 -8.275 5.314 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.146 4.146 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.036 3.964 10 C -0.038 4.038 11 N -0.222 5.222 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.158 4.158 16 C -0.050 4.050 17 H 0.056 0.944 18 C 0.086 3.914 19 H 0.128 0.872 20 O -0.364 6.364 21 C -0.093 4.093 22 C -0.137 4.137 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.103 4.103 27 C -0.229 4.229 28 C -0.238 4.238 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.033 0.967 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.216 0.784 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.165 0.835 46 H 0.061 0.939 47 H 0.116 0.884 48 H 0.144 0.856 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.818 -8.023 5.432 12.449 hybrid contribution 0.983 0.712 -0.378 1.272 sum 8.801 -7.310 5.055 12.508 Atomic orbital electron populations 1.69954 1.05667 1.25561 1.51189 1.25022 0.94827 0.98922 0.95781 0.86733 0.79590 0.83624 0.78464 1.20543 1.21673 1.20392 1.20828 0.93494 0.88018 1.46673 0.90285 1.18853 0.85307 0.92544 0.99675 1.21863 0.88805 0.97538 0.95575 1.61718 1.02031 1.23982 1.34429 1.22430 0.92475 1.00634 0.92169 1.21575 0.96082 0.97531 1.00261 1.21524 0.97742 0.97740 0.98300 1.21843 0.94242 1.00386 0.99322 1.22184 0.94514 0.92238 0.96091 0.94355 1.21099 0.97341 0.81694 0.91258 0.87176 1.86609 1.41473 1.30929 1.77339 1.20131 0.95407 0.98369 0.95416 1.20706 0.98483 0.99686 0.94870 1.20864 0.98111 0.97616 0.98455 1.21050 0.95034 0.99333 0.98997 1.21117 0.99232 0.98346 0.94198 1.21720 0.97638 0.93426 0.97539 1.22800 1.08209 0.98194 0.93672 1.23168 1.04763 1.00796 0.95047 0.93430 0.95574 0.92914 0.87332 0.96695 0.90914 0.92365 0.92486 0.92918 0.89627 0.92754 0.78418 0.87313 0.87072 0.87041 0.86430 0.83498 0.93945 0.88431 0.85630 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.75 8.63 55.43 0.48 -23.27 16 2 C 0.05 1.41 5.28 -17.82 -0.09 1.32 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.45 -11.35 8.03 -34.44 -0.28 -11.63 16 8 H 0.08 1.94 4.44 -52.49 -0.23 1.71 16 9 C 0.04 0.85 2.46 -155.66 -0.38 0.46 16 10 C 0.09 1.74 4.84 -3.82 -0.02 1.72 16 11 N -0.50 -8.86 3.50 -226.69 -0.79 -9.65 16 12 C 0.05 0.87 4.37 -3.83 -0.02 0.85 16 13 C -0.12 -1.75 6.09 -26.65 -0.16 -1.91 16 14 C -0.12 -1.48 6.00 -26.61 -0.16 -1.64 16 15 C -0.12 -1.60 3.91 -26.65 -0.10 -1.70 16 16 C 0.06 0.90 1.85 -67.73 -0.13 0.78 16 17 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 18 C 0.14 2.23 2.88 -27.88 -0.08 2.15 16 19 H 0.11 1.85 5.44 -51.93 -0.28 1.57 16 20 O -0.56 -7.85 13.18 -35.23 -0.46 -8.32 16 21 C -0.09 -1.50 4.34 -104.62 -0.45 -1.96 16 22 C -0.12 -1.70 6.96 -39.58 -0.28 -1.98 16 23 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 25 C -0.11 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.09 -1.55 9.52 -39.59 -0.38 -1.93 16 27 C -0.19 -4.39 7.25 -26.70 -0.19 -4.59 16 28 C -0.20 -4.75 9.37 -26.69 -0.25 -5.00 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.03 0.51 7.81 -51.93 -0.41 0.11 16 31 H 0.05 0.98 4.66 -51.93 -0.24 0.74 16 32 H 0.11 2.15 5.34 -51.93 -0.28 1.88 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.09 1.27 5.56 -51.93 -0.29 0.98 16 39 H 0.05 0.59 6.80 -51.93 -0.35 0.24 16 40 H 0.37 3.97 5.98 45.56 0.27 4.25 16 41 H 0.11 1.26 5.93 -52.49 -0.31 0.95 16 42 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 45 H 0.15 2.84 2.93 -52.49 -0.15 2.69 16 46 H 0.04 0.89 6.34 -51.93 -0.33 0.56 16 47 H 0.10 2.52 6.80 -51.92 -0.35 2.16 16 48 H 0.13 3.35 5.76 -51.92 -0.30 3.05 16 49 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -26.94 352.75 -11.27 -38.21 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.62 Total: 13.95 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: -4.16 Total: -31.96 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: -0.31 Total: -32.92 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.46 Total: -8.32 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.94 -11.27 -38.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878222859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.564 kcal (2) G-P(sol) polarization free energy of solvation -26.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds