Wall clock time and date at job start Tue Mar 31 2020 12:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99748 * 2 1 4 4 H 1.48505 * 109.47226 * 239.99947 * 3 2 1 5 5 H 1.48494 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46894 * 120.00319 * 3 2 1 7 7 C 1.37875 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.53000 * 115.55142 * 174.00558 * 9 7 2 11 11 N 1.46902 * 109.47047 * 29.87638 * 10 9 7 12 12 C 1.46849 * 110.99805 * 271.85693 * 11 10 9 13 13 C 1.53035 * 109.52610 * 174.15967 * 12 11 10 14 14 C 1.53123 * 109.27952 * 59.17506 * 13 12 11 15 15 C 1.53121 * 109.16160 * 302.35183 * 14 13 12 16 16 C 1.46843 * 111.00258 * 147.64379 * 11 10 9 17 17 H 1.08999 * 109.44990 * 65.82867 * 16 11 10 18 18 C 1.52997 * 109.46515 * 305.85526 * 16 11 10 19 19 H 1.09001 * 109.46961 * 55.65835 * 18 16 11 20 20 O 1.42898 * 109.47250 * 175.66362 * 18 16 11 21 21 C 1.50703 * 109.47052 * 295.66537 * 18 16 11 22 22 C 1.38236 * 119.99606 * 280.41585 * 21 18 16 23 23 C 1.38234 * 119.99769 * 179.76831 * 22 21 18 24 24 C 1.38230 * 120.00012 * 0.49940 * 23 22 21 25 25 C 1.38240 * 119.99952 * 359.75422 * 24 23 22 26 26 C 1.38229 * 120.00132 * 100.68788 * 21 18 16 27 27 C 1.52999 * 117.50400 * 319.68233 * 9 7 2 28 28 C 1.53003 * 117.50065 * 28.34257 * 9 7 2 29 29 H 0.96997 * 120.00151 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47600 * 269.87665 * 10 9 7 31 31 H 1.09000 * 109.46971 * 149.87227 * 10 9 7 32 32 H 1.09002 * 109.46302 * 54.14078 * 12 11 10 33 33 H 1.09005 * 109.46332 * 294.17328 * 12 11 10 34 34 H 1.08997 * 109.50282 * 299.23882 * 13 12 11 35 35 H 1.08994 * 109.53513 * 179.13728 * 13 12 11 36 36 H 1.08995 * 109.52626 * 182.44482 * 14 13 12 37 37 H 1.09007 * 109.57015 * 62.28025 * 14 13 12 38 38 H 1.09000 * 109.50225 * 297.71416 * 15 14 13 39 39 H 1.08996 * 109.50348 * 177.59633 * 15 14 13 40 40 H 0.96696 * 114.00437 * 59.99675 * 20 18 16 41 41 H 1.08002 * 120.00096 * 359.97438 * 22 21 18 42 42 H 1.08000 * 119.99720 * 180.22761 * 23 22 21 43 43 H 1.08003 * 120.00055 * 179.71998 * 24 23 22 44 44 H 1.08000 * 119.99763 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00536 * 359.97438 * 26 21 18 46 46 H 1.08998 * 117.50132 * 215.00392 * 27 9 7 47 47 H 1.09009 * 117.49563 * 0.02562 * 27 9 7 48 48 H 1.09011 * 117.49376 * 359.97155 * 28 9 7 49 49 H 1.08996 * 117.50578 * 144.99152 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.1101 -3.7570 -0.1453 11 7 3.4354 -3.5149 0.4402 12 6 4.3515 -2.9376 -0.5519 13 6 5.6715 -2.5649 0.1267 14 6 6.2902 -3.8184 0.7518 15 6 5.2968 -4.4273 1.7453 16 6 3.9876 -4.7460 1.0197 17 1 4.1790 -5.4671 0.2251 18 6 2.9848 -5.3362 2.0131 19 1 2.0283 -5.4925 1.5143 20 8 3.4772 -6.5856 2.5014 21 6 2.8002 -4.3837 3.1663 22 6 3.7378 -4.3370 4.1810 23 6 3.5709 -3.4599 5.2363 24 6 2.4612 -2.6370 5.2822 25 6 1.5209 -2.6874 4.2702 26 6 1.6905 -3.5608 3.2122 27 6 0.0021 -2.5939 0.8780 28 6 -0.1368 -2.5136 -0.6443 29 1 -0.4850 0.8400 0.0004 30 1 2.2189 -4.0031 -1.2015 31 1 1.6297 -4.5866 0.3735 32 1 3.9012 -2.0447 -0.9856 33 1 4.5412 -3.6674 -1.3390 34 1 5.4844 -1.8248 0.9048 35 1 6.3570 -2.1506 -0.6124 36 1 7.2088 -3.5499 1.2734 37 1 6.5141 -4.5439 -0.0303 38 1 5.1038 -3.7164 2.5487 39 1 5.7145 -5.3438 2.1620 40 1 4.3273 -6.5221 2.9579 41 1 4.6024 -4.9834 4.1475 42 1 4.3053 -3.4208 6.0272 43 1 2.3286 -1.9549 6.1091 44 1 0.6537 -2.0447 4.3063 45 1 0.9559 -3.6001 2.4215 46 1 -0.2077 -3.5523 1.3529 47 1 -0.2750 -1.7120 1.4557 48 1 -0.5051 -1.5789 -1.0674 49 1 -0.4380 -3.4192 -1.1709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878222859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:09 Heat of formation + Delta-G solvation = 18.255330 kcal Electronic energy + Delta-G solvation = -29009.001343 eV Core-core repulsion = 25516.017806 eV Total energy + Delta-G solvation = -3492.983537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.43292 -39.35916 -38.29405 -37.27759 -34.38488 -33.24957 -32.86383 -31.63528 -30.94810 -27.99274 -27.28816 -26.87691 -24.11008 -23.32118 -23.14856 -22.49808 -21.73221 -20.70442 -20.26237 -18.50856 -18.04168 -17.01148 -16.98328 -16.81287 -16.33759 -15.72169 -15.62277 -15.34660 -15.13579 -14.90227 -14.74307 -14.34513 -14.13974 -13.91584 -13.85767 -13.56244 -13.23407 -13.05847 -12.93873 -12.88339 -12.68916 -12.50224 -12.28202 -12.09714 -11.96662 -11.78407 -11.65295 -11.58163 -11.32312 -11.15566 -10.94344 -10.77292 -10.58409 -10.04793 -9.87742 -9.54325 -9.39123 -8.86737 -7.84728 -5.91952 0.62215 0.74248 1.43093 1.45269 1.50273 2.50203 2.93380 3.06022 3.20883 3.58635 3.72172 3.85368 3.96267 3.98920 4.15229 4.16601 4.25371 4.30694 4.40517 4.46788 4.49060 4.56994 4.63379 4.66567 4.76731 4.80318 4.80929 4.92940 4.96900 5.02851 5.07451 5.11319 5.15083 5.19039 5.27312 5.31726 5.35897 5.40881 5.42098 5.46888 5.60228 5.70712 5.75047 5.84744 5.91915 6.08971 6.29312 6.32002 6.46250 6.50796 6.70364 6.78974 7.11477 7.63890 9.07098 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.006538 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.036935 B = 4281.674602 C = 4815.800515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.007 3.993 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.037 3.963 10 C 0.098 3.902 11 N -0.507 5.507 12 C 0.051 3.949 13 C -0.113 4.113 14 C -0.110 4.110 15 C -0.117 4.117 16 C 0.062 3.938 17 H 0.041 0.959 18 C 0.154 3.846 19 H 0.090 0.910 20 O -0.560 6.560 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.112 4.112 27 C -0.176 4.176 28 C -0.211 4.211 29 H 0.249 0.751 30 H 0.022 0.978 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.385 0.615 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.126 0.874 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -10.022 6.526 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.494 4.494 8 H 0.101 0.899 9 C 0.037 3.963 10 C -0.030 4.030 11 N -0.233 5.233 12 C -0.077 4.077 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.155 4.155 16 C -0.047 4.047 17 H 0.059 0.941 18 C 0.095 3.905 19 H 0.108 0.892 20 O -0.367 6.367 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.130 4.130 27 C -0.213 4.213 28 C -0.250 4.250 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.235 0.765 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.148 0.852 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.257 -9.776 6.646 16.324 hybrid contribution -0.074 1.222 -0.724 1.422 sum 11.182 -8.554 5.922 15.274 Atomic orbital electron populations 1.70130 1.06631 1.25454 1.52504 1.25642 0.95460 1.01544 0.96323 0.85913 0.78404 0.80625 0.78389 1.19812 1.22240 1.20535 1.21184 0.93947 0.88934 1.45290 0.89882 1.18973 0.85282 0.93482 0.98609 1.21666 0.89756 0.95916 0.95651 1.61621 1.01424 1.25815 1.34402 1.22344 0.93310 0.99421 0.92609 1.21543 0.95164 0.98440 0.99967 1.21502 0.98140 0.96542 0.98548 1.21862 0.93075 1.01716 0.98811 1.22241 0.95457 0.90929 0.96085 0.94098 1.20830 0.96697 0.82017 0.90986 0.89223 1.86599 1.42722 1.29840 1.77530 1.20234 0.95248 0.98151 0.96362 1.21083 0.98711 0.99651 0.93776 1.21291 0.97942 0.96409 0.99090 1.21322 0.94953 0.99937 0.98798 1.21180 1.00000 0.98949 0.95433 1.21627 0.98580 0.95163 0.97609 1.22546 1.08407 0.97660 0.92716 1.23072 1.06058 1.00174 0.95648 0.94148 0.95933 0.91982 0.90624 0.95814 0.93045 0.90882 0.90332 0.91792 0.90880 0.89259 0.76473 0.83832 0.83662 0.85151 0.87787 0.85699 0.92123 0.91655 0.88468 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.97 8.63 21.45 0.19 -50.79 16 2 C 0.01 0.39 5.28 84.65 0.45 0.84 16 3 Si 0.94 43.72 29.54 68.60 2.03 45.75 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.46 -23.50 8.03 25.60 0.21 -23.30 16 8 H 0.08 4.17 4.44 -2.91 -0.01 4.15 16 9 C 0.04 1.76 2.46 -52.93 -0.13 1.63 16 10 C 0.10 3.83 4.84 86.30 0.42 4.25 16 11 N -0.51 -17.68 3.50 -871.11 -3.05 -20.73 16 12 C 0.05 1.70 4.37 86.32 0.38 2.08 16 13 C -0.11 -3.15 6.09 30.65 0.19 -2.96 16 14 C -0.11 -2.36 6.00 30.68 0.18 -2.18 16 15 C -0.12 -2.61 3.91 30.65 0.12 -2.49 16 16 C 0.06 1.73 1.85 44.94 0.08 1.81 16 17 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 18 C 0.15 4.43 2.88 29.85 0.09 4.52 16 19 H 0.09 2.95 5.44 -2.39 -0.01 2.94 16 20 O -0.56 -13.78 13.18 -148.98 -1.96 -15.75 16 21 C -0.10 -3.06 4.34 -19.87 -0.09 -3.14 16 22 C -0.11 -2.86 6.96 22.27 0.16 -2.71 16 23 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 24 C -0.13 -3.86 10.05 22.27 0.22 -3.63 16 25 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 26 C -0.11 -4.11 9.52 22.27 0.21 -3.90 16 27 C -0.18 -8.44 7.25 30.62 0.22 -8.21 16 28 C -0.21 -10.45 9.37 30.62 0.29 -10.16 16 29 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.02 0.89 7.81 -2.39 -0.02 0.87 16 31 H 0.06 2.32 4.66 -2.39 -0.01 2.31 16 32 H 0.08 3.03 5.34 -2.39 -0.01 3.02 16 33 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 1.86 5.56 -2.39 -0.01 1.85 16 39 H 0.09 1.40 6.80 -2.39 -0.02 1.38 16 40 H 0.38 6.37 5.98 -74.06 -0.44 5.92 16 41 H 0.14 2.52 5.93 -2.91 -0.02 2.51 16 42 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 43 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.10 3.79 8.06 -2.91 -0.02 3.76 16 45 H 0.13 5.03 2.93 -2.91 -0.01 5.03 16 46 H 0.06 2.66 6.34 -2.39 -0.02 2.64 16 47 H 0.06 3.57 6.80 -2.38 -0.02 3.56 16 48 H 0.10 5.44 5.76 -2.38 -0.01 5.42 16 49 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -60.62 352.75 1.17 -59.45 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.53 Total: 37.28 kcal Atomic # 6 Polarization: -58.65 SS G_CDS: 3.44 Total: -55.21 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -2.86 Total: -71.52 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -1.96 Total: -15.75 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -60.62 1.17 -59.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878222859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.704 kcal (2) G-P(sol) polarization free energy of solvation -60.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds